data_3L69 # _entry.id 3L69 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3L69 RCSB RCSB056885 WWPDB D_1000056885 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-01-25 _pdbx_database_PDB_obs_spr.pdb_id 4DBK _pdbx_database_PDB_obs_spr.replace_pdb_id 3L69 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.entry_id 3L69 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-12-23 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Naveen, C.' 1 'Prasanth, G.K.' 2 'Abhilash, J.' 3 'Pradeep, M.' 4 'Ponnuraj, K.' 5 'Sadasivan, C.' 6 'Haridas, M.' 7 # _citation.id primary _citation.title 'Crystal structure of porcine pancreatic phospholipase A2 complexed with berberine' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Naveen, C.' 1 primary 'Prasanth, G.K.' 2 primary 'Abhilash, J.' 3 primary 'Pradeep, M.' 4 primary 'Ponnuraj, K.' 5 primary 'Sadasivan, C.' 6 primary 'Haridas, M.' 7 # _cell.length_a 68.600 _cell.length_b 68.600 _cell.length_c 70.080 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3L69 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 3L69 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 152 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Phospholipase A2, major isoenzyme' 14009.714 1 3.1.1.4 ? ? ? 2 non-polymer syn BERBERINE 336.361 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 5 water nat water 18.015 60 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Phosphatidylcholine 2-acylhydrolase, Group IB phospholipase A2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNT EITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC ; _entity_poly.pdbx_seq_one_letter_code_can ;ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNT EITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LEU n 1 3 TRP n 1 4 GLN n 1 5 PHE n 1 6 ARG n 1 7 SER n 1 8 MET n 1 9 ILE n 1 10 LYS n 1 11 CYS n 1 12 ALA n 1 13 ILE n 1 14 PRO n 1 15 GLY n 1 16 SER n 1 17 HIS n 1 18 PRO n 1 19 LEU n 1 20 MET n 1 21 ASP n 1 22 PHE n 1 23 ASN n 1 24 ASN n 1 25 TYR n 1 26 GLY n 1 27 CYS n 1 28 TYR n 1 29 CYS n 1 30 GLY n 1 31 LEU n 1 32 GLY n 1 33 GLY n 1 34 SER n 1 35 GLY n 1 36 THR n 1 37 PRO n 1 38 VAL n 1 39 ASP n 1 40 GLU n 1 41 LEU n 1 42 ASP n 1 43 ARG n 1 44 CYS n 1 45 CYS n 1 46 GLU n 1 47 THR n 1 48 HIS n 1 49 ASP n 1 50 ASN n 1 51 CYS n 1 52 TYR n 1 53 ARG n 1 54 ASP n 1 55 ALA n 1 56 LYS n 1 57 ASN n 1 58 LEU n 1 59 ASP n 1 60 SER n 1 61 CYS n 1 62 LYS n 1 63 PHE n 1 64 LEU n 1 65 VAL n 1 66 ASP n 1 67 ASN n 1 68 PRO n 1 69 TYR n 1 70 THR n 1 71 GLU n 1 72 SER n 1 73 TYR n 1 74 SER n 1 75 TYR n 1 76 SER n 1 77 CYS n 1 78 SER n 1 79 ASN n 1 80 THR n 1 81 GLU n 1 82 ILE n 1 83 THR n 1 84 CYS n 1 85 ASN n 1 86 SER n 1 87 LYS n 1 88 ASN n 1 89 ASN n 1 90 ALA n 1 91 CYS n 1 92 GLU n 1 93 ALA n 1 94 PHE n 1 95 ILE n 1 96 CYS n 1 97 ASN n 1 98 CYS n 1 99 ASP n 1 100 ARG n 1 101 ASN n 1 102 ALA n 1 103 ALA n 1 104 ILE n 1 105 CYS n 1 106 PHE n 1 107 SER n 1 108 LYS n 1 109 ALA n 1 110 PRO n 1 111 TYR n 1 112 ASN n 1 113 LYS n 1 114 GLU n 1 115 HIS n 1 116 LYS n 1 117 ASN n 1 118 LEU n 1 119 ASP n 1 120 THR n 1 121 LYS n 1 122 LYS n 1 123 TYR n 1 124 CYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name pig _entity_src_nat.pdbx_organism_scientific 'Sus scrofa' _entity_src_nat.pdbx_ncbi_taxonomy_id 9823 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PA21B_PIG _struct_ref.pdbx_db_accession P00592 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ALWQFRSMIKCAIPGSHPLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAKNLDSCKFLVDNPYTESYSYSCSNT EITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L69 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 124 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00592 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BER non-polymer . BERBERINE ? 'C20 H18 N O4 1' 336.361 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3L69 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.40 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 63.80 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.05M Tris maleate buffer, 5mM CaCl2, 16% MPD, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 294K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-03-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3L69 _reflns.observed_criterion_sigma_F 2.00 _reflns.observed_criterion_sigma_I 2.00 _reflns.d_resolution_high 2.3 _reflns.d_resolution_low 20.00 _reflns.number_all 10063 _reflns.number_obs 8802 _reflns.percent_possible_obs 93.20 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.00 _reflns.B_iso_Wilson_estimate 29.00 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 3L69 _refine.ls_d_res_high 2.300 _refine.ls_d_res_low 19.800 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 93.240 _refine.ls_number_reflns_obs 8187 _refine.ls_number_reflns_all 8800 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: RESIDUAL ONLY' _refine.ls_R_factor_all 0.1900 _refine.ls_R_factor_obs 0.190 _refine.ls_R_factor_R_work 0.1878 _refine.ls_wR_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.236 _refine.ls_wR_factor_R_free 0.219 _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 394 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 29.329 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.010 _refine.aniso_B[2][2] 0.010 _refine.aniso_B[3][3] -0.010 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.952 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.overall_SU_R_Cruickshank_DPI 0.248 _refine.overall_SU_R_free 0.209 _refine.pdbx_overall_ESU_R 0.248 _refine.pdbx_overall_ESU_R_Free 0.209 _refine.overall_SU_ML 0.136 _refine.overall_SU_B 11.747 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 4P2P _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.862 _refine.B_iso_max 187.94 _refine.B_iso_min 8.45 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 971 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 1060 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 19.800 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1039 0.022 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1413 2.018 1.974 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 125 6.340 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 50 40.461 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 167 17.578 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 4 22.059 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 139 0.134 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 811 0.009 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 625 1.060 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1004 1.894 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 414 2.838 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 409 4.323 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.301 _refine_ls_shell.d_res_low 2.360 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.840 _refine_ls_shell.number_reflns_R_work 589 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.237 _refine_ls_shell.R_factor_R_free 0.294 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 42 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 631 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L69 _struct.title 'Crystal structure of porcine pancreatic phospholipase A2 complexed with berberine' _struct.pdbx_descriptor 'Phospholipase A2, major isoenzyme (E.C.3.1.1.4)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L69 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Phospholipase A2, Berberine, Disulfide bond, Hydrolase, Lipid degradation, Lipoprotein, Palmitate, Pyrrolidone carboxylic acid, Secreted ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 3 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 1 ? ILE A 13 ? ALA A 1 ILE A 13 1 ? 13 HELX_P HELX_P2 2 HIS A 17 ? ASN A 23 ? HIS A 17 ASN A 23 1 ? 7 HELX_P HELX_P3 3 ASP A 39 ? ASN A 57 ? ASP A 39 ASN A 57 1 ? 19 HELX_P HELX_P4 4 PHE A 63 ? GLU A 71 ? PHE A 63 GLU A 71 5 ? 9 HELX_P HELX_P5 5 ASN A 89 ? SER A 107 ? ASN A 89 SER A 107 1 ? 19 HELX_P HELX_P6 6 ASN A 112 ? LYS A 116 ? ASN A 112 LYS A 116 5 ? 5 HELX_P HELX_P7 7 ASP A 119 ? CYS A 124 ? ASP A 119 CYS A 124 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 11 SG ? ? ? 1_555 A CYS 77 SG ? ? A CYS 11 A CYS 77 1_555 ? ? ? ? ? ? ? 2.038 ? disulf2 disulf ? ? A CYS 27 SG ? ? ? 1_555 A CYS 124 SG ? ? A CYS 27 A CYS 124 1_555 ? ? ? ? ? ? ? 2.016 ? disulf3 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 45 SG ? ? A CYS 29 A CYS 45 1_555 ? ? ? ? ? ? ? 2.050 ? disulf4 disulf ? ? A CYS 44 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 44 A CYS 105 1_555 ? ? ? ? ? ? ? 1.967 ? disulf5 disulf ? ? A CYS 51 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 51 A CYS 98 1_555 ? ? ? ? ? ? ? 2.075 ? disulf6 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 91 SG ? ? A CYS 61 A CYS 91 1_555 ? ? ? ? ? ? ? 2.015 ? disulf7 disulf ? ? A CYS 84 SG ? ? ? 1_555 A CYS 96 SG ? ? A CYS 84 A CYS 96 1_555 ? ? ? ? ? ? ? 2.060 ? metalc1 metalc ? ? A TYR 28 O ? ? ? 1_555 C CA . CA ? ? A TYR 28 A CA 125 1_555 ? ? ? ? ? ? ? 2.240 ? metalc2 metalc ? ? A GLY 30 O ? ? ? 1_555 C CA . CA ? ? A GLY 30 A CA 125 1_555 ? ? ? ? ? ? ? 2.319 ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 125 A HOH 137 1_555 ? ? ? ? ? ? ? 2.337 ? metalc4 metalc ? ? A GLY 32 O ? ? ? 1_555 C CA . CA ? ? A GLY 32 A CA 125 1_555 ? ? ? ? ? ? ? 2.436 ? metalc5 metalc ? ? A ASP 49 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 49 A CA 125 1_555 ? ? ? ? ? ? ? 2.441 ? metalc6 metalc ? ? A ASP 49 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 49 A CA 125 1_555 ? ? ? ? ? ? ? 2.481 ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 125 A HOH 148 1_555 ? ? ? ? ? ? ? 2.767 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 75 ? SER A 78 ? TYR A 75 SER A 78 A 2 GLU A 81 ? CYS A 84 ? GLU A 81 CYS A 84 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 78 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 78 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id GLU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 81 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id GLU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 81 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE BER A 1811' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CA A 125' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE CL A 126' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CA A 127' AC5 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 128' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 23 ? ASN A 23 . ? 1_555 ? 2 AC1 6 LEU A 31 ? LEU A 31 . ? 1_555 ? 3 AC1 6 PRO A 37 ? PRO A 37 . ? 2_565 ? 4 AC1 6 VAL A 38 ? VAL A 38 . ? 2_565 ? 5 AC1 6 VAL A 65 ? VAL A 65 . ? 1_555 ? 6 AC1 6 ASN A 67 ? ASN A 67 . ? 1_555 ? 7 AC2 6 TYR A 28 ? TYR A 28 . ? 1_555 ? 8 AC2 6 GLY A 30 ? GLY A 30 . ? 1_555 ? 9 AC2 6 GLY A 32 ? GLY A 32 . ? 1_555 ? 10 AC2 6 ASP A 49 ? ASP A 49 . ? 1_555 ? 11 AC2 6 HOH G . ? HOH A 137 . ? 1_555 ? 12 AC2 6 HOH G . ? HOH A 148 . ? 1_555 ? 13 AC3 6 GLU A 71 ? GLU A 71 . ? 1_555 ? 14 AC3 6 GLU A 71 ? GLU A 71 . ? 6_555 ? 15 AC3 6 SER A 72 ? SER A 72 . ? 6_555 ? 16 AC3 6 SER A 72 ? SER A 72 . ? 1_555 ? 17 AC3 6 GLU A 92 ? GLU A 92 . ? 6_555 ? 18 AC3 6 GLU A 92 ? GLU A 92 . ? 1_555 ? 19 AC4 1 CL F . ? CL A 128 . ? 1_555 ? 20 AC5 1 CA E . ? CA A 127 . ? 1_555 ? # _atom_sites.entry_id 3L69 _atom_sites.fract_transf_matrix[1][1] 0.014577 _atom_sites.fract_transf_matrix[1][2] 0.008416 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016832 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014269 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 MET 8 8 8 MET MET A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 CYS 11 11 11 CYS CYS A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 MET 20 20 20 MET MET A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 ASP 42 42 42 ASP ASP A . n A 1 43 ARG 43 43 43 ARG ARG A . n A 1 44 CYS 44 44 44 CYS CYS A . n A 1 45 CYS 45 45 45 CYS CYS A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 ASP 59 59 59 ASP ASP A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 LYS 62 62 62 LYS LYS A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 CYS 77 77 77 CYS CYS A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 CYS 84 84 84 CYS CYS A . n A 1 85 ASN 85 85 85 ASN ASN A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 ASN 89 89 89 ASN ASN A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 ILE 95 95 95 ILE ILE A . n A 1 96 CYS 96 96 96 CYS CYS A . n A 1 97 ASN 97 97 97 ASN ASN A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 ALA 109 109 109 ALA ALA A . n A 1 110 PRO 110 110 110 PRO PRO A . n A 1 111 TYR 111 111 111 TYR TYR A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 LEU 118 118 118 LEU LEU A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 TYR 123 123 123 TYR TYR A . n A 1 124 CYS 124 124 124 CYS CYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BER 1 1811 1811 BER BER A . C 3 CA 1 125 1 CA CA A . D 4 CL 1 126 1 CL CL A . E 3 CA 1 127 1 CA CA A . F 4 CL 1 128 1 CL CL A . G 5 HOH 1 129 1 HOH HOH A . G 5 HOH 2 130 2 HOH HOH A . G 5 HOH 3 131 3 HOH HOH A . G 5 HOH 4 132 4 HOH HOH A . G 5 HOH 5 133 5 HOH HOH A . G 5 HOH 6 134 7 HOH HOH A . G 5 HOH 7 135 8 HOH HOH A . G 5 HOH 8 136 9 HOH HOH A . G 5 HOH 9 137 1 HOH HOH A . G 5 HOH 10 138 2 HOH HOH A . G 5 HOH 11 139 3 HOH HOH A . G 5 HOH 12 140 6 HOH HOH A . G 5 HOH 13 141 7 HOH HOH A . G 5 HOH 14 142 1 HOH HOH A . G 5 HOH 15 143 2 HOH HOH A . G 5 HOH 16 144 3 HOH HOH A . G 5 HOH 17 145 1 HOH HOH A . G 5 HOH 18 146 2 HOH HOH A . G 5 HOH 19 147 3 HOH HOH A . G 5 HOH 20 148 4 HOH HOH A . G 5 HOH 21 149 5 HOH HOH A . G 5 HOH 22 150 7 HOH HOH A . G 5 HOH 23 151 8 HOH HOH A . G 5 HOH 24 152 9 HOH HOH A . G 5 HOH 25 153 10 HOH HOH A . G 5 HOH 26 154 11 HOH HOH A . G 5 HOH 27 155 12 HOH HOH A . G 5 HOH 28 156 13 HOH HOH A . G 5 HOH 29 157 14 HOH HOH A . G 5 HOH 30 158 15 HOH HOH A . G 5 HOH 31 159 1 HOH HOH A . G 5 HOH 32 160 2 HOH HOH A . G 5 HOH 33 161 3 HOH HOH A . G 5 HOH 34 162 4 HOH HOH A . G 5 HOH 35 163 5 HOH HOH A . G 5 HOH 36 164 6 HOH HOH A . G 5 HOH 37 165 7 HOH HOH A . G 5 HOH 38 166 8 HOH HOH A . G 5 HOH 39 167 9 HOH HOH A . G 5 HOH 40 168 10 HOH HOH A . G 5 HOH 41 169 11 HOH HOH A . G 5 HOH 42 170 12 HOH HOH A . G 5 HOH 43 171 13 HOH HOH A . G 5 HOH 44 172 3 HOH HOH A . G 5 HOH 45 173 6 HOH HOH A . G 5 HOH 46 174 9 HOH HOH A . G 5 HOH 47 175 10 HOH HOH A . G 5 HOH 48 176 12 HOH HOH A . G 5 HOH 49 177 17 HOH HOH A . G 5 HOH 50 178 19 HOH HOH A . G 5 HOH 51 179 20 HOH HOH A . G 5 HOH 52 180 5 HOH HOH A . G 5 HOH 53 181 11 HOH HOH A . G 5 HOH 54 182 13 HOH HOH A . G 5 HOH 55 183 19 HOH HOH A . G 5 HOH 56 184 1 HOH HOH A . G 5 HOH 57 185 2 HOH HOH A . G 5 HOH 58 186 3 HOH HOH A . G 5 HOH 59 187 4 HOH HOH A . G 5 HOH 60 188 5 HOH HOH A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G 2 1,2 A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 1230 ? 2 MORE -9 ? 2 'SSA (A^2)' 13310 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 23.3600000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CL _pdbx_struct_special_symmetry.auth_seq_id 126 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id CL _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? A GLY 30 ? A GLY 30 ? 1_555 89.6 ? 2 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 137 ? 1_555 170.4 ? 3 O ? A GLY 30 ? A GLY 30 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 137 ? 1_555 83.9 ? 4 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? A GLY 32 ? A GLY 32 ? 1_555 94.2 ? 5 O ? A GLY 30 ? A GLY 30 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? A GLY 32 ? A GLY 32 ? 1_555 81.6 ? 6 O ? G HOH . ? A HOH 137 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? A GLY 32 ? A GLY 32 ? 1_555 91.9 ? 7 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 104.0 ? 8 O ? A GLY 30 ? A GLY 30 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 157.2 ? 9 O ? G HOH . ? A HOH 137 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 84.5 ? 10 O ? A GLY 32 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 79.2 ? 11 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 108.0 ? 12 O ? A GLY 30 ? A GLY 30 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 140.9 ? 13 O ? G HOH . ? A HOH 137 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 73.5 ? 14 O ? A GLY 32 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 129.5 ? 15 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 52.0 ? 16 O ? A TYR 28 ? A TYR 28 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 72.9 ? 17 O ? A GLY 30 ? A GLY 30 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 69.3 ? 18 O ? G HOH . ? A HOH 137 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 98.1 ? 19 O ? A GLY 32 ? A GLY 32 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 147.9 ? 20 OD2 ? A ASP 49 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 131.9 ? 21 OD1 ? A ASP 49 ? A ASP 49 ? 1_555 CA ? C CA . ? A CA 125 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 82.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-01-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -29.9371 _pdbx_refine_tls.origin_y 23.5639 _pdbx_refine_tls.origin_z 2.6560 _pdbx_refine_tls.T[1][1] 0.2317 _pdbx_refine_tls.T[2][2] 0.0491 _pdbx_refine_tls.T[3][3] 0.0847 _pdbx_refine_tls.T[1][2] -0.0335 _pdbx_refine_tls.T[1][3] -0.0078 _pdbx_refine_tls.T[2][3] -0.0369 _pdbx_refine_tls.L[1][1] 5.9055 _pdbx_refine_tls.L[2][2] 3.0729 _pdbx_refine_tls.L[3][3] 2.0393 _pdbx_refine_tls.L[1][2] 3.1867 _pdbx_refine_tls.L[1][3] 1.5135 _pdbx_refine_tls.L[2][3] 1.3999 _pdbx_refine_tls.S[1][1] -0.4561 _pdbx_refine_tls.S[2][2] 0.0570 _pdbx_refine_tls.S[3][3] 0.3991 _pdbx_refine_tls.S[1][2] -0.0311 _pdbx_refine_tls.S[1][3] 0.1633 _pdbx_refine_tls.S[2][3] 0.2285 _pdbx_refine_tls.S[2][1] -0.5403 _pdbx_refine_tls.S[3][1] -0.1354 _pdbx_refine_tls.S[3][2] -0.1799 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 124 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 3L69 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.690 _pdbx_phasing_MR.d_res_low_rotation 29.700 _pdbx_phasing_MR.d_res_high_translation 2.690 _pdbx_phasing_MR.d_res_low_translation 29.700 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 HKL . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data processing' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk 'molecular replacement' http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC5 . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 HKL . ? ? ? ? 'data scaling' ? ? ? 8 MOLREP . ? ? ? ? phasing ? ? ? 9 REFMAC 5.5.0102 ? ? ? ? refinement ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 116 ? A O A HOH 174 ? ? 2.00 2 1 OE2 A GLU 71 ? ? CL A CL 126 ? ? 2.10 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.38 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 80 ? ? 74.38 -10.91 2 1 ASP A 119 ? ? -67.31 88.81 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BERBERINE BER 3 'CALCIUM ION' CA 4 'CHLORIDE ION' CL 5 water HOH #