HEADER ISOMERASE 24-DEC-09 3L6R TITLE THE STRUCTURE OF MAMMALIAN SERINE RACEMASE: EVIDENCE FOR TITLE 2 CONFORMATIONAL CHANGES UPON INHIBITOR BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE RACEMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.1.1.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SRR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 24A KEYWDS PYRIDOXAL PHOSPHATE, PLP, SERINE RACEMASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SMITH,V.MACK,A.EBNETH,A.CESURA,B.FELICETTI,J.BARKER REVDAT 3 10-NOV-21 3L6R 1 REMARK SEQADV LINK REVDAT 2 12-MAY-10 3L6R 1 JRNL REVDAT 1 26-JAN-10 3L6R 0 JRNL AUTH M.A.SMITH,V.MACK,A.EBNETH,I.MORAES,B.FELICETTI,M.WOOD, JRNL AUTH 2 D.SCHONFELD,O.MATHER,A.CESURA,J.BARKER JRNL TITL THE STRUCTURE OF MAMMALIAN SERINE RACEMASE: EVIDENCE FOR JRNL TITL 2 CONFORMATIONAL CHANGES UPON INHIBITOR BINDING. JRNL REF J.BIOL.CHEM. V. 285 12873 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20106978 JRNL DOI 10.1074/JBC.M109.050062 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 33537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1775 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1925 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.54 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2427 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.169 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2549 ; 0.030 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3491 ; 2.064 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 341 ; 5.750 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;42.268 ;25.699 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;14.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.399 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1869 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1632 ; 2.073 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2668 ; 3.273 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 917 ; 4.755 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 812 ; 7.284 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2549 ; 2.589 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -1.1224 28.4318 -10.0281 REMARK 3 T TENSOR REMARK 3 T11: 0.0626 T22: 0.0660 REMARK 3 T33: 0.0495 T12: 0.0012 REMARK 3 T13: -0.0015 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.3762 L22: 0.2186 REMARK 3 L33: 0.1332 L12: -0.0362 REMARK 3 L13: -0.0176 L23: -0.1337 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.0505 S13: 0.0092 REMARK 3 S21: 0.0083 S22: 0.0129 S23: -0.0006 REMARK 3 S31: 0.0043 S32: 0.0012 S33: -0.0060 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4268 14.5110 -9.6096 REMARK 3 T TENSOR REMARK 3 T11: 0.4677 T22: 0.3801 REMARK 3 T33: 0.3472 T12: 0.3125 REMARK 3 T13: -0.0127 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 30.8349 L22: 14.8012 REMARK 3 L33: 14.4014 L12: 2.0734 REMARK 3 L13: -5.3106 L23: -14.4173 REMARK 3 S TENSOR REMARK 3 S11: -2.6765 S12: -2.4847 S13: -1.3205 REMARK 3 S21: 0.6610 S22: 0.4773 S23: -2.0827 REMARK 3 S31: -0.3171 S32: -0.1340 S33: 2.1992 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 77 A 115 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6093 21.8763 -23.6062 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.0591 REMARK 3 T33: 0.0597 T12: -0.0004 REMARK 3 T13: 0.0062 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6470 L22: 0.4723 REMARK 3 L33: 0.5972 L12: -0.1051 REMARK 3 L13: -0.1391 L23: 0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.0215 S13: 0.0219 REMARK 3 S21: -0.0053 S22: -0.0201 S23: -0.0503 REMARK 3 S31: -0.0172 S32: 0.0502 S33: -0.0062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 116 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8139 16.8157 -29.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.0638 T22: 0.0546 REMARK 3 T33: 0.0525 T12: 0.0054 REMARK 3 T13: 0.0044 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8242 L22: 0.4831 REMARK 3 L33: 0.5461 L12: 0.0721 REMARK 3 L13: -0.4574 L23: 0.1198 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: -0.0018 S13: -0.0026 REMARK 3 S21: -0.0266 S22: 0.0102 S23: 0.0196 REMARK 3 S31: 0.0214 S32: 0.0355 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6255 19.1310 -14.6274 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.0605 REMARK 3 T33: 0.0542 T12: -0.0030 REMARK 3 T13: 0.0005 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.2251 L22: 0.1955 REMARK 3 L33: 0.3109 L12: -0.0854 REMARK 3 L13: -0.0534 L23: -0.1069 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0341 S13: -0.0313 REMARK 3 S21: -0.0034 S22: 0.0042 S23: 0.0201 REMARK 3 S31: 0.0206 S32: -0.0083 S33: -0.0080 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): -8.9323 25.9465 -23.7286 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0580 REMARK 3 T33: 0.0533 T12: -0.0024 REMARK 3 T13: -0.0007 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.2451 L22: 0.1813 REMARK 3 L33: 0.1629 L12: 0.0448 REMARK 3 L13: 0.0602 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: 0.0016 S13: -0.0042 REMARK 3 S21: -0.0221 S22: 0.0037 S23: 0.0209 REMARK 3 S31: 0.0085 S32: -0.0094 S33: 0.0001 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 296 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8629 31.1723 -16.9710 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0651 REMARK 3 T33: 0.0593 T12: 0.0005 REMARK 3 T13: 0.0009 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.3102 L22: 0.4161 REMARK 3 L33: 0.4662 L12: 0.0228 REMARK 3 L13: -0.6369 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: 0.0208 S13: 0.0363 REMARK 3 S21: -0.0036 S22: 0.0366 S23: 0.0496 REMARK 3 S31: -0.0016 S32: -0.0433 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 320 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1399 39.2453 -35.9661 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1436 REMARK 3 T33: 0.0556 T12: -0.0382 REMARK 3 T13: -0.0697 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 7.2982 L22: 9.9913 REMARK 3 L33: 8.3196 L12: -8.1532 REMARK 3 L13: -2.7709 L23: 0.5625 REMARK 3 S TENSOR REMARK 3 S11: 0.4895 S12: 0.2998 S13: -0.4593 REMARK 3 S21: -0.5384 S22: -0.6511 S23: 0.5154 REMARK 3 S31: -0.2432 S32: 0.7730 S33: 0.1615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 12.45 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.44 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : 0.31000 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 200MM SODIUM MALONATE, 50MM REMARK 280 MNCL2, PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 27.27150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.10600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.27150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.10600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.21200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ASP A 2 REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 ALA A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 ARG A 74 REMARK 465 LYS A 75 REMARK 465 GLU A 330 REMARK 465 ARG A 331 REMARK 465 PRO A 332 REMARK 465 ALA A 333 REMARK 465 SER A 334 REMARK 465 TYR A 335 REMARK 465 GLN A 336 REMARK 465 SER A 337 REMARK 465 VAL A 338 REMARK 465 SER A 339 REMARK 465 VAL A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 65 O HOH A 391 1.35 REMARK 500 O HOH A 382 O HOH A 615 2.00 REMARK 500 NE2 HIS A 297 O HOH A 613 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 108 O HOH A 522 4554 0.27 REMARK 500 HD3 ARG A 65 O HOH A 620 4555 1.21 REMARK 500 CD GLN A 108 O HOH A 522 4554 1.24 REMARK 500 HH12 ARG A 65 O LEU A 200 4555 1.50 REMARK 500 CG1 ILE A 323 CD1 ILE A 323 2565 1.65 REMARK 500 O HOH A 373 O HOH A 655 4554 1.75 REMARK 500 CD1 ILE A 323 CD1 ILE A 323 2565 1.98 REMARK 500 CD ARG A 65 O HOH A 620 4555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 210 CD GLU A 210 OE1 -0.070 REMARK 500 GLU A 266 CD GLU A 266 OE1 -0.072 REMARK 500 GLU A 266 CD GLU A 266 OE2 -0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 52 -0.71 79.06 REMARK 500 ASN A 154 -12.80 -147.83 REMARK 500 LYS A 201 77.43 -159.34 REMARK 500 ALA A 214 56.14 -153.81 REMARK 500 ASP A 215 32.13 -99.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 348 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 210 OE2 REMARK 620 2 ALA A 214 O 81.0 REMARK 620 3 ASP A 216 OD1 94.9 92.0 REMARK 620 4 HOH A 411 O 174.0 94.7 80.9 REMARK 620 5 HOH A 696 O 104.0 92.4 161.1 80.4 REMARK 620 6 HOH A 702 O 87.8 166.5 81.5 95.8 97.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 348 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L6B RELATED DB: PDB REMARK 900 RELATED ID: 3L6C RELATED DB: PDB REMARK 900 RELATED ID: 3HMK RELATED DB: PDB DBREF 3L6R A 1 340 UNP Q9GZT4 SRR_HUMAN 1 340 SEQADV 3L6R ASP A 2 UNP Q9GZT4 CYS 2 ENGINEERED MUTATION SEQADV 3L6R ASP A 6 UNP Q9GZT4 CYS 6 ENGINEERED MUTATION SEQADV 3L6R HIS A 341 UNP Q9GZT4 EXPRESSION TAG SEQADV 3L6R HIS A 342 UNP Q9GZT4 EXPRESSION TAG SEQADV 3L6R HIS A 343 UNP Q9GZT4 EXPRESSION TAG SEQADV 3L6R HIS A 344 UNP Q9GZT4 EXPRESSION TAG SEQADV 3L6R HIS A 345 UNP Q9GZT4 EXPRESSION TAG SEQADV 3L6R HIS A 346 UNP Q9GZT4 EXPRESSION TAG SEQRES 1 A 346 MSE ASP ALA GLN TYR ASP ILE SER PHE ALA ASP VAL GLU SEQRES 2 A 346 LYS ALA HIS ILE ASN ILE ARG ASP SER ILE HIS LEU THR SEQRES 3 A 346 PRO VAL LEU THR SER SER ILE LEU ASN GLN LEU THR GLY SEQRES 4 A 346 ARG ASN LEU PHE PHE LYS CYS GLU LEU PHE GLN LYS THR SEQRES 5 A 346 GLY SER PHE LLP ILE ARG GLY ALA LEU ASN ALA VAL ARG SEQRES 6 A 346 SER LEU VAL PRO ASP ALA LEU GLU ARG LYS PRO LYS ALA SEQRES 7 A 346 VAL VAL THR HIS SER SER GLY ASN HIS GLY GLN ALA LEU SEQRES 8 A 346 THR TYR ALA ALA LYS LEU GLU GLY ILE PRO ALA TYR ILE SEQRES 9 A 346 VAL VAL PRO GLN THR ALA PRO ASP CYS LYS LYS LEU ALA SEQRES 10 A 346 ILE GLN ALA TYR GLY ALA SER ILE VAL TYR CYS GLU PRO SEQRES 11 A 346 SER ASP GLU SER ARG GLU ASN VAL ALA LYS ARG VAL THR SEQRES 12 A 346 GLU GLU THR GLU GLY ILE MSE VAL HIS PRO ASN GLN GLU SEQRES 13 A 346 PRO ALA VAL ILE ALA GLY GLN GLY THR ILE ALA LEU GLU SEQRES 14 A 346 VAL LEU ASN GLN VAL PRO LEU VAL ASP ALA LEU VAL VAL SEQRES 15 A 346 PRO VAL GLY GLY GLY GLY MSE LEU ALA GLY ILE ALA ILE SEQRES 16 A 346 THR VAL LYS ALA LEU LYS PRO SER VAL LYS VAL TYR ALA SEQRES 17 A 346 ALA GLU PRO SER ASN ALA ASP ASP CYS TYR GLN SER LYS SEQRES 18 A 346 LEU LYS GLY LYS LEU MSE PRO ASN LEU TYR PRO PRO GLU SEQRES 19 A 346 THR ILE ALA ASP GLY VAL LYS SER SER ILE GLY LEU ASN SEQRES 20 A 346 THR TRP PRO ILE ILE ARG ASP LEU VAL ASP ASP ILE PHE SEQRES 21 A 346 THR VAL THR GLU ASP GLU ILE LYS CYS ALA THR GLN LEU SEQRES 22 A 346 VAL TRP GLU ARG MSE LYS LEU LEU ILE GLU PRO THR ALA SEQRES 23 A 346 GLY VAL GLY VAL ALA ALA VAL LEU SER GLN HIS PHE GLN SEQRES 24 A 346 THR VAL SER PRO GLU VAL LYS ASN ILE CYS ILE VAL LEU SEQRES 25 A 346 SER GLY GLY ASN VAL ASP LEU THR SER SER ILE THR TRP SEQRES 26 A 346 VAL LYS GLN ALA GLU ARG PRO ALA SER TYR GLN SER VAL SEQRES 27 A 346 SER VAL HIS HIS HIS HIS HIS HIS MODRES 3L6R LLP A 56 LYS MODRES 3L6R MSE A 150 MET SELENOMETHIONINE MODRES 3L6R MSE A 189 MET SELENOMETHIONINE MODRES 3L6R MSE A 227 MET SELENOMETHIONINE MODRES 3L6R MSE A 278 MET SELENOMETHIONINE HET LLP A 56 24 HET MSE A 150 8 HET MSE A 189 8 HET MSE A 227 8 HET MSE A 278 8 HET MLI A 347 7 HET MN A 348 1 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM MSE SELENOMETHIONINE HETNAM MLI MALONATE ION HETNAM MN MANGANESE (II) ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 MN MN 2+ FORMUL 4 HOH *353(H2 O) HELIX 1 1 SER A 8 ARG A 20 1 13 HELIX 2 2 ASP A 21 ILE A 23 5 3 HELIX 3 3 SER A 31 GLY A 39 1 9 HELIX 4 4 LEU A 48 PHE A 55 5 8 HELIX 5 5 LLP A 56 LEU A 67 1 12 HELIX 6 6 GLY A 85 GLU A 98 1 14 HELIX 7 7 PRO A 111 TYR A 121 1 11 HELIX 8 8 SER A 131 GLU A 147 1 17 HELIX 9 9 GLU A 156 GLY A 164 1 9 HELIX 10 10 GLY A 164 VAL A 174 1 11 HELIX 11 11 GLY A 187 LYS A 201 1 15 HELIX 12 12 ASP A 215 GLY A 224 1 10 HELIX 13 13 ALA A 237 LYS A 241 5 5 HELIX 14 14 ASN A 247 VAL A 256 1 10 HELIX 15 15 THR A 263 LYS A 279 1 17 HELIX 16 16 GLU A 283 THR A 285 5 3 HELIX 17 17 ALA A 286 SER A 295 1 10 HELIX 18 18 GLN A 296 VAL A 301 5 6 HELIX 19 19 ASP A 318 ILE A 323 1 6 SHEET 1 A 6 VAL A 28 LEU A 29 0 SHEET 2 A 6 ASN A 41 CYS A 46 -1 O PHE A 44 N LEU A 29 SHEET 3 A 6 ASN A 307 LEU A 312 1 O ILE A 310 N PHE A 43 SHEET 4 A 6 ALA A 179 PRO A 183 1 N ALA A 179 O CYS A 309 SHEET 5 A 6 LYS A 205 PRO A 211 1 O TYR A 207 N LEU A 180 SHEET 6 A 6 ASP A 258 VAL A 262 1 O PHE A 260 N GLU A 210 SHEET 1 B 4 SER A 124 CYS A 128 0 SHEET 2 B 4 ALA A 102 PRO A 107 1 N ILE A 104 O SER A 124 SHEET 3 B 4 VAL A 79 HIS A 82 1 N THR A 81 O VAL A 105 SHEET 4 B 4 ILE A 149 MSE A 150 1 O ILE A 149 N VAL A 80 LINK C LLP A 56 N ILE A 57 1555 1555 1.31 LINK C ILE A 149 N MSE A 150 1555 1555 1.31 LINK C MSE A 150 N VAL A 151 1555 1555 1.34 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N LEU A 190 1555 1555 1.32 LINK C LEU A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N PRO A 228 1555 1555 1.32 LINK C ARG A 277 N MSE A 278 1555 1555 1.33 LINK C MSE A 278 N LYS A 279 1555 1555 1.32 LINK OE2 GLU A 210 MN MN A 348 1555 1555 2.19 LINK O ALA A 214 MN MN A 348 1555 1555 2.27 LINK OD1 ASP A 216 MN MN A 348 1555 1555 2.24 LINK MN MN A 348 O HOH A 411 1555 1555 2.25 LINK MN MN A 348 O HOH A 696 1555 1555 2.20 LINK MN MN A 348 O HOH A 702 1555 1555 2.13 SITE 1 AC1 11 LLP A 56 SER A 83 SER A 84 ASN A 86 SITE 2 AC1 11 HIS A 87 ARG A 135 GLY A 239 SER A 242 SITE 3 AC1 11 HOH A 461 HOH A 585 HOH A 658 SITE 1 AC2 6 GLU A 210 ALA A 214 ASP A 216 HOH A 411 SITE 2 AC2 6 HOH A 696 HOH A 702 CRYST1 54.543 84.212 70.376 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018334 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014209 0.00000