HEADER IMMUNE SYSTEM 28-DEC-09 3L7E TITLE CRYSTAL STRUCTURE OF ANTI-IL-13 ANTIBODY C836 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C836 LIGHT CHAIN; COMPND 3 CHAIN: L, A; COMPND 4 FRAGMENT: CHIMERIC MOLECULE OF MOUSE VARIABLE DOMAIN AND HUMAN COMPND 5 CONSTANT DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: C836 HEAVY CHAIN; COMPND 9 CHAIN: H, B; COMPND 10 FRAGMENT: FD FRAGMENT OF THE HEAVY CHAIN, CHIMERIC MOLECULE OF MOUSE COMPND 11 VARIABLE DOMAIN AND HUMAN CONSTANT DOMAIN; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 10090,9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY (HEK) 293 CELLS; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS, HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 10090,9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL: HUMAN EMBRYONIC KIDNEY (HEK) 293 CELLS KEYWDS IMMUNOGLOBULIN FOLD, MONOCLONAL ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.TEPLYAKOV,G.OBMOLOVA,T.MALIA,G.L.GILLILAND REVDAT 4 06-SEP-23 3L7E 1 REMARK REVDAT 3 26-OCT-11 3L7E 1 JRNL REVDAT 2 20-JUL-11 3L7E 1 JRNL REVDAT 1 10-NOV-10 3L7E 0 JRNL AUTH A.TEPLYAKOV,G.OBMOLOVA,T.J.MALIA,G.GILLILAND JRNL TITL ANTIGEN RECOGNITION BY ANTIBODY C836 THROUGH ADJUSTMENT OF JRNL TITL 2 VL/VH PACKING JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1165 2011 JRNL REFN ESSN 1744-3091 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 28645 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1529 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 91 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : -1.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.035 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.310 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.348 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6739 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9173 ; 1.320 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ; 6.655 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;36.700 ;24.609 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1079 ;17.262 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1029 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5034 ; 0.000 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2708 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4488 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 307 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 80 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4358 ; 2.144 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6906 ; 4.072 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2750 ;17.294 ;88.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2267 ;18.782 ;88.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056926. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.6L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.6L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30327 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 75.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3L5W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 0.2 M REMARK 280 AMMONIUM SULFATE, 16% PEG 4K; CRYO CONDITIONS: SODIUM ACETATE PH REMARK 280 4.5, 0.2 M AMMONIUM SULFATE, 20% PEG 4K, 20% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.97000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.97000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 70.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 214 REMARK 465 LYS H 137 REMARK 465 SER H 138 REMARK 465 THR H 139 REMARK 465 SER H 140 REMARK 465 GLY H 141 REMARK 465 LYS H 222 REMARK 465 SER H 223 REMARK 465 CYS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 HIS H 230 REMARK 465 CYS A 214 REMARK 465 SER B 136 REMARK 465 LYS B 137 REMARK 465 SER B 138 REMARK 465 THR B 139 REMARK 465 SER B 140 REMARK 465 GLY B 141 REMARK 465 LYS B 222 REMARK 465 SER B 223 REMARK 465 CYS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 HIS B 227 REMARK 465 HIS B 228 REMARK 465 HIS B 229 REMARK 465 HIS B 230 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU L 181 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -118.13 52.07 REMARK 500 SER L 52 4.27 -152.60 REMARK 500 SER L 77 62.44 -108.32 REMARK 500 LEU L 78 128.55 -37.31 REMARK 500 LYS L 126 -14.16 -46.60 REMARK 500 PRO L 204 134.39 -31.04 REMARK 500 SER A 30 -132.75 67.55 REMARK 500 LEU A 78 132.61 -36.76 REMARK 500 ASN A 138 76.93 41.37 REMARK 500 ASN A 152 7.53 58.70 REMARK 500 ARG A 211 109.53 -58.68 REMARK 500 SER B 15 -18.50 86.68 REMARK 500 ALA B 64 3.06 -66.58 REMARK 500 LEU B 65 -33.89 -148.53 REMARK 500 LYS B 66 -49.43 -12.46 REMARK 500 SER B 86 75.08 14.62 REMARK 500 TYR B 104 5.47 -150.08 REMARK 500 ASP B 152 66.90 70.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL L 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L5W RELATED DB: PDB REMARK 900 IL-13:C836 FAB COMPLEX REMARK 900 RELATED ID: 3L5X RELATED DB: PDB REMARK 900 IL-13:H2L6 FAB COMPLEX REMARK 900 RELATED ID: 3L5Y RELATED DB: PDB REMARK 900 IL-13:M1295 FAB COMPLEX REMARK 900 RELATED ID: 3L7F RELATED DB: PDB DBREF 3L7E L 1 214 PDB 3L7E 3L7E 1 214 DBREF 3L7E A 1 214 PDB 3L7E 3L7E 1 214 DBREF 3L7E H 1 230 PDB 3L7E 3L7E 1 230 DBREF 3L7E B 1 230 PDB 3L7E 3L7E 1 230 SEQRES 1 L 214 ASP VAL GLN ILE THR GLN SER PRO SER TYR LEU ALA ALA SEQRES 2 L 214 SER PRO GLY GLU THR ILE THR LEU ASN CYS ARG ALA SER SEQRES 3 L 214 LYS SER ILE SER LYS TYR LEU ALA TRP TYR GLN GLU LYS SEQRES 4 L 214 PRO GLY LYS THR ASN LYS LEU LEU ILE TYR SER GLY SER SEQRES 5 L 214 THR LEU GLN SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLU PRO GLU ASP PHE ALA MET TYR PHE CYS GLN GLN HIS SEQRES 8 L 214 ASN GLU TYR PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 230 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 H 230 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 H 230 PHE SER LEU SER THR TYR GLY MET GLY VAL GLY TRP ILE SEQRES 4 H 230 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 230 ILE TRP TRP ASP ASP VAL LYS ARG TYR ASN PRO ALA LEU SEQRES 6 H 230 LYS SER ARG LEU THR ILE SER LYS ASP THR SER GLY SER SEQRES 7 H 230 GLN VAL PHE LEU LYS ILE ALA SER VAL ASP THR SER ASP SEQRES 8 H 230 THR ALA THR TYR TYR CYS ALA ARG MET GLY SER ASP TYR SEQRES 9 H 230 ASP VAL TRP PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 H 230 THR VAL SER ALA ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 230 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 230 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 230 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 230 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 230 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 230 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 230 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 230 LYS SER CYS HIS HIS HIS HIS HIS HIS SEQRES 1 A 214 ASP VAL GLN ILE THR GLN SER PRO SER TYR LEU ALA ALA SEQRES 2 A 214 SER PRO GLY GLU THR ILE THR LEU ASN CYS ARG ALA SER SEQRES 3 A 214 LYS SER ILE SER LYS TYR LEU ALA TRP TYR GLN GLU LYS SEQRES 4 A 214 PRO GLY LYS THR ASN LYS LEU LEU ILE TYR SER GLY SER SEQRES 5 A 214 THR LEU GLN SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 214 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 214 GLU PRO GLU ASP PHE ALA MET TYR PHE CYS GLN GLN HIS SEQRES 8 A 214 ASN GLU TYR PRO TYR THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 A 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 A 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 A 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 A 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 A 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 A 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 A 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 A 214 PHE ASN ARG GLY GLU CYS SEQRES 1 B 230 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU GLN SEQRES 2 B 230 PRO SER GLN THR LEU SER LEU THR CYS SER PHE SER GLY SEQRES 3 B 230 PHE SER LEU SER THR TYR GLY MET GLY VAL GLY TRP ILE SEQRES 4 B 230 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 B 230 ILE TRP TRP ASP ASP VAL LYS ARG TYR ASN PRO ALA LEU SEQRES 6 B 230 LYS SER ARG LEU THR ILE SER LYS ASP THR SER GLY SER SEQRES 7 B 230 GLN VAL PHE LEU LYS ILE ALA SER VAL ASP THR SER ASP SEQRES 8 B 230 THR ALA THR TYR TYR CYS ALA ARG MET GLY SER ASP TYR SEQRES 9 B 230 ASP VAL TRP PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 B 230 THR VAL SER ALA ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 B 230 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 B 230 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 B 230 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 B 230 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 B 230 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 B 230 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 B 230 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 B 230 LYS SER CYS HIS HIS HIS HIS HIS HIS HET SO4 L1001 5 HET GOL L1005 6 HET SO4 H1002 5 HET ACT H1004 4 HET ACT B1003 4 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL C3 H8 O3 FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *174(H2 O) HELIX 1 1 GLU L 79 PHE L 83 5 5 HELIX 2 2 SER L 121 LYS L 126 1 6 HELIX 3 3 LYS L 183 GLU L 187 1 5 HELIX 4 4 ASP H 88 THR H 92 5 5 HELIX 5 5 SER H 164 ALA H 166 5 3 HELIX 6 6 SER H 195 GLY H 198 5 4 HELIX 7 7 LYS H 209 ASN H 212 5 4 HELIX 8 8 GLU A 79 PHE A 83 5 5 HELIX 9 9 SER A 121 LYS A 126 1 6 HELIX 10 10 LYS A 183 HIS A 189 1 7 HELIX 11 11 LEU B 65 SER B 67 5 3 HELIX 12 12 ASP B 88 ASP B 91 5 4 HELIX 13 13 SER B 195 LEU B 197 5 3 HELIX 14 14 LYS B 209 ASN B 212 5 4 SHEET 1 A 4 ILE L 4 SER L 7 0 SHEET 2 A 4 ILE L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 B 6 TYR L 10 ALA L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 B 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 B 6 LEU L 33 GLU L 38 -1 N ALA L 34 O GLN L 89 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 C 4 TYR L 10 ALA L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 C 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 SER L 114 PHE L 118 0 SHEET 2 D 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 D 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 D 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 E 4 ALA L 153 LEU L 154 0 SHEET 2 E 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 E 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 E 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 F 4 GLN H 79 ILE H 84 -1 O LEU H 82 N LEU H 20 SHEET 4 F 4 LEU H 69 LYS H 73 -1 N SER H 72 O PHE H 81 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 115 VAL H 119 1 O THR H 118 N LEU H 12 SHEET 3 G 6 ALA H 93 MET H 100 -1 N TYR H 95 O THR H 115 SHEET 4 G 6 GLY H 35 GLN H 41 -1 N ILE H 39 O TYR H 96 SHEET 5 G 6 GLU H 48 TRP H 54 -1 O ALA H 51 N TRP H 38 SHEET 6 G 6 LYS H 59 TYR H 61 -1 O ARG H 60 N HIS H 52 SHEET 1 H 4 ILE H 11 LEU H 12 0 SHEET 2 H 4 THR H 115 VAL H 119 1 O THR H 118 N LEU H 12 SHEET 3 H 4 ALA H 93 MET H 100 -1 N TYR H 95 O THR H 115 SHEET 4 H 4 PHE H 108 TRP H 111 -1 O TYR H 110 N ARG H 99 SHEET 1 I 4 SER H 128 LEU H 132 0 SHEET 2 I 4 THR H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 I 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 I 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 J 4 SER H 128 LEU H 132 0 SHEET 2 J 4 THR H 143 TYR H 153 -1 O GLY H 147 N LEU H 132 SHEET 3 J 4 TYR H 184 PRO H 193 -1 O LEU H 186 N VAL H 150 SHEET 4 J 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 K 3 THR H 159 TRP H 162 0 SHEET 2 K 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 K 3 THR H 213 VAL H 219 -1 O VAL H 215 N VAL H 206 SHEET 1 L 4 ILE A 4 SER A 7 0 SHEET 2 L 4 ILE A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 L 4 ASP A 70 ILE A 75 -1 O LEU A 73 N LEU A 21 SHEET 4 L 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 M 6 TYR A 10 ALA A 13 0 SHEET 2 M 6 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 M 6 MET A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 M 6 LEU A 33 GLU A 38 -1 N ALA A 34 O GLN A 89 SHEET 5 M 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 M 6 THR A 53 LEU A 54 -1 O THR A 53 N TYR A 49 SHEET 1 N 4 TYR A 10 ALA A 13 0 SHEET 2 N 4 THR A 102 ILE A 106 1 O GLU A 105 N LEU A 11 SHEET 3 N 4 MET A 85 GLN A 90 -1 N TYR A 86 O THR A 102 SHEET 4 N 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 O 4 SER A 114 PHE A 118 0 SHEET 2 O 4 THR A 129 PHE A 139 -1 O LEU A 135 N PHE A 116 SHEET 3 O 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 O 4 SER A 159 VAL A 163 -1 N SER A 162 O SER A 176 SHEET 1 P 4 ALA A 153 LEU A 154 0 SHEET 2 P 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 P 4 VAL A 191 THR A 197 -1 O GLU A 195 N GLN A 147 SHEET 4 P 4 VAL A 205 ASN A 210 -1 O LYS A 207 N CYS A 194 SHEET 1 Q 4 THR B 3 SER B 7 0 SHEET 2 Q 4 LEU B 18 SER B 25 -1 O SER B 25 N THR B 3 SHEET 3 Q 4 GLN B 79 ILE B 84 -1 O LEU B 82 N LEU B 20 SHEET 4 Q 4 LEU B 69 LYS B 73 -1 N SER B 72 O PHE B 81 SHEET 1 R 6 ILE B 11 LEU B 12 0 SHEET 2 R 6 THR B 115 VAL B 119 1 O THR B 118 N LEU B 12 SHEET 3 R 6 ALA B 93 MET B 100 -1 N TYR B 95 O THR B 115 SHEET 4 R 6 GLY B 35 PRO B 42 -1 N ILE B 39 O TYR B 96 SHEET 5 R 6 GLU B 48 TRP B 54 -1 O ALA B 51 N TRP B 38 SHEET 6 R 6 LYS B 59 TYR B 61 -1 O ARG B 60 N HIS B 52 SHEET 1 S 4 ILE B 11 LEU B 12 0 SHEET 2 S 4 THR B 115 VAL B 119 1 O THR B 118 N LEU B 12 SHEET 3 S 4 ALA B 93 MET B 100 -1 N TYR B 95 O THR B 115 SHEET 4 S 4 PHE B 108 TRP B 111 -1 O TYR B 110 N ARG B 99 SHEET 1 T 4 SER B 128 LEU B 132 0 SHEET 2 T 4 THR B 143 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 T 4 TYR B 184 PRO B 193 -1 O LEU B 186 N VAL B 150 SHEET 4 T 4 VAL B 171 THR B 173 -1 N HIS B 172 O VAL B 189 SHEET 1 U 4 SER B 128 LEU B 132 0 SHEET 2 U 4 THR B 143 TYR B 153 -1 O GLY B 147 N LEU B 132 SHEET 3 U 4 TYR B 184 PRO B 193 -1 O LEU B 186 N VAL B 150 SHEET 4 U 4 VAL B 177 LEU B 178 -1 N VAL B 177 O SER B 185 SHEET 1 V 3 THR B 159 TRP B 162 0 SHEET 2 V 3 ILE B 203 HIS B 208 -1 O ASN B 205 N SER B 161 SHEET 3 V 3 THR B 213 LYS B 218 -1 O VAL B 215 N VAL B 206 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 97 1555 1555 2.03 SSBOND 4 CYS H 148 CYS H 204 1555 1555 2.03 SSBOND 5 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 6 CYS A 134 CYS A 194 1555 1555 2.02 SSBOND 7 CYS B 22 CYS B 97 1555 1555 2.05 SSBOND 8 CYS B 148 CYS B 204 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -4.67 CISPEP 2 TYR L 94 PRO L 95 0 -5.82 CISPEP 3 TYR L 140 PRO L 141 0 -1.27 CISPEP 4 PHE H 154 PRO H 155 0 -3.77 CISPEP 5 GLU H 156 PRO H 157 0 -6.02 CISPEP 6 SER A 7 PRO A 8 0 -15.09 CISPEP 7 TYR A 94 PRO A 95 0 -8.58 CISPEP 8 TYR A 140 PRO A 141 0 -1.89 CISPEP 9 PHE B 154 PRO B 155 0 -4.03 CISPEP 10 GLU B 156 PRO B 157 0 -6.57 SITE 1 AC1 7 GLN L 6 SER L 7 PRO L 8 SER L 9 SITE 2 AC1 7 SER L 14 GLU L 17 LYS L 107 SITE 1 AC2 10 PHE H 174 PRO H 175 SER H 185 LEU H 186 SITE 2 AC2 10 SER H 187 GLN L 160 SER L 162 SER L 176 SITE 3 AC2 10 SER L 177 THR L 178 SITE 1 AC3 8 ASP B 74 THR B 75 SER B 76 ASP H 57 SITE 2 AC3 8 LYS H 59 ILE H 71 SER H 72 LYS H 73 SITE 1 AC4 4 TRP H 54 ASP H 56 ASP H 103 TYR H 104 SITE 1 AC5 3 ASN B 163 ALA B 166 GLN B 200 CRYST1 97.940 141.460 76.580 90.00 117.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010210 0.000000 0.005306 0.00000 SCALE2 0.000000 0.007069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014716 0.00000