HEADER PROTEIN TRANSPORT 28-DEC-09 3L7H TITLE INSIGHTS INTO DYNEIN ASSEMBLY FROM A DYNEIN INTERMEDIATE CHAIN LIGHT TITLE 2 CHAIN ROADBLOCK STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RE64145P; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LC7; COMPND 5 SYNONYM: ROADBLOCK; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: CG10751, DMEL_CG10751, ROBL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDE3 KEYWDS LC7, KM23, ROADBLOCK, DYNEIN, LIGHT CHAIN, HYDROLASE, PROTEIN KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.HALL,P.A.KARPLUS,E.BARBAR REVDAT 2 06-SEP-23 3L7H 1 REMARK REVDAT 1 12-MAY-10 3L7H 0 JRNL AUTH J.HALL,P.A.KARPLUS,E.BARBAR JRNL TITL INSIGHTS INTO DYNEIN ASSEMBLY FROM A DYNEIN INTERMEDIATE JRNL TITL 2 CHAIN LIGHT CHAIN ROADBLOCK STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 27041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3031 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1802 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -2.48000 REMARK 3 B33 (A**2) : 2.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.62000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2897 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3924 ; 1.931 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 5.627 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;37.565 ;24.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;17.254 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;21.177 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2089 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1816 ; 8.442 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2990 ;10.027 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1081 ;14.318 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 926 ;17.642 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8670 19.7450 62.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.2717 REMARK 3 T33: 0.0696 T12: -0.0023 REMARK 3 T13: -0.0067 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.0014 L22: 1.4666 REMARK 3 L33: 1.1362 L12: 0.4815 REMARK 3 L13: 0.7977 L23: 0.2648 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: -0.0338 S13: -0.2890 REMARK 3 S21: 0.0201 S22: 0.0379 S23: -0.0705 REMARK 3 S31: 0.1660 S32: 0.0800 S33: -0.1118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6070 10.1090 33.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.2983 REMARK 3 T33: 0.0613 T12: -0.0093 REMARK 3 T13: -0.0066 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 0.9284 L22: 1.6011 REMARK 3 L33: 0.8718 L12: -0.0407 REMARK 3 L13: 0.0767 L23: -0.1036 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0158 S13: -0.1751 REMARK 3 S21: 0.0900 S22: -0.0165 S23: -0.0049 REMARK 3 S31: 0.1098 S32: -0.0811 S33: -0.0283 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 94 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3650 39.7940 65.2630 REMARK 3 T TENSOR REMARK 3 T11: 0.0685 T22: 0.2832 REMARK 3 T33: 0.0662 T12: -0.0254 REMARK 3 T13: 0.0016 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 1.9683 L22: 1.4611 REMARK 3 L33: 1.4097 L12: -0.3059 REMARK 3 L13: -1.3936 L23: -0.0783 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: -0.1533 S13: 0.2192 REMARK 3 S21: 0.1227 S22: -0.0173 S23: -0.0785 REMARK 3 S31: -0.1076 S32: 0.1404 S33: -0.1361 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 5 D 94 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1850 31.3560 30.9240 REMARK 3 T TENSOR REMARK 3 T11: 0.0742 T22: 0.2827 REMARK 3 T33: 0.0858 T12: 0.0171 REMARK 3 T13: -0.0031 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 2.1292 L22: 1.5305 REMARK 3 L33: 1.2259 L12: 0.5254 REMARK 3 L13: -0.3841 L23: 0.1847 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.0534 S13: 0.3231 REMARK 3 S21: -0.1046 S22: 0.0202 S23: 0.0642 REMARK 3 S31: -0.1221 S32: -0.0878 S33: -0.0831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 133.15 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 63.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : 0.12200 REMARK 200 FOR THE DATA SET : 2.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.09200 REMARK 200 R SYM FOR SHELL (I) : 0.40000 REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2HZ5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% ISO-PROPANOL, 20% PEG 4000, 100 MM REMARK 280 SODIUM CITRATE., PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.34650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 THR A 8 REMARK 465 PRO A 95 REMARK 465 THR A 96 REMARK 465 ASP A 97 REMARK 465 PRO B 95 REMARK 465 THR B 96 REMARK 465 ASP B 97 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 GLU C 4 REMARK 465 PRO C 95 REMARK 465 THR C 96 REMARK 465 ASP C 97 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 GLU D 4 REMARK 465 PRO D 95 REMARK 465 THR D 96 REMARK 465 ASP D 97 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 113 O HOH A 129 1.99 REMARK 500 O HOH D 213 O HOH D 344 2.05 REMARK 500 O LYS D 85 O HOH D 293 2.12 REMARK 500 O HOH B 106 O HOH B 121 2.12 REMARK 500 OD2 ASP B 66 O HOH B 248 2.17 REMARK 500 O HOH A 130 O HOH A 292 2.17 REMARK 500 O HOH B 120 O HOH B 317 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN C 26 O HOH B 248 2657 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 43 CE2 TYR B 43 CD2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 55 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 85 -115.25 59.55 REMARK 500 LYS B 85 -131.15 56.68 REMARK 500 ASP C 62 99.31 -162.96 REMARK 500 PRO C 83 134.65 -39.69 REMARK 500 LYS C 85 -117.54 54.70 REMARK 500 ASP D 62 99.79 -167.25 REMARK 500 PRO D 83 89.83 -66.86 REMARK 500 LYS D 85 -118.13 55.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L9K RELATED DB: PDB DBREF 3L7H A 1 97 UNP Q7KMS3 Q7KMS3_DROME 1 97 DBREF 3L7H B 1 97 UNP Q7KMS3 Q7KMS3_DROME 1 97 DBREF 3L7H C 1 97 UNP Q7KMS3 Q7KMS3_DROME 1 97 DBREF 3L7H D 1 97 UNP Q7KMS3 Q7KMS3_DROME 1 97 SEQRES 1 A 97 MET SER GLN GLU VAL GLU GLU THR LEU LYS ARG ILE GLN SEQRES 2 A 97 SER HIS LYS GLY VAL VAL GLY THR ILE VAL VAL ASN ASN SEQRES 3 A 97 GLU GLY ILE PRO VAL LYS SER THR LEU ASP ASN THR THR SEQRES 4 A 97 THR VAL GLN TYR ALA GLY LEU MET SER GLN LEU ALA ASP SEQRES 5 A 97 LYS ALA ARG SER VAL VAL ARG ASP LEU ASP PRO SER ASN SEQRES 6 A 97 ASP MET THR PHE LEU ARG VAL ARG SER LYS LYS HIS GLU SEQRES 7 A 97 ILE MET VAL ALA PRO ASP LYS ASP PHE ILE LEU ILE VAL SEQRES 8 A 97 ILE GLN ASN PRO THR ASP SEQRES 1 B 97 MET SER GLN GLU VAL GLU GLU THR LEU LYS ARG ILE GLN SEQRES 2 B 97 SER HIS LYS GLY VAL VAL GLY THR ILE VAL VAL ASN ASN SEQRES 3 B 97 GLU GLY ILE PRO VAL LYS SER THR LEU ASP ASN THR THR SEQRES 4 B 97 THR VAL GLN TYR ALA GLY LEU MET SER GLN LEU ALA ASP SEQRES 5 B 97 LYS ALA ARG SER VAL VAL ARG ASP LEU ASP PRO SER ASN SEQRES 6 B 97 ASP MET THR PHE LEU ARG VAL ARG SER LYS LYS HIS GLU SEQRES 7 B 97 ILE MET VAL ALA PRO ASP LYS ASP PHE ILE LEU ILE VAL SEQRES 8 B 97 ILE GLN ASN PRO THR ASP SEQRES 1 C 97 MET SER GLN GLU VAL GLU GLU THR LEU LYS ARG ILE GLN SEQRES 2 C 97 SER HIS LYS GLY VAL VAL GLY THR ILE VAL VAL ASN ASN SEQRES 3 C 97 GLU GLY ILE PRO VAL LYS SER THR LEU ASP ASN THR THR SEQRES 4 C 97 THR VAL GLN TYR ALA GLY LEU MET SER GLN LEU ALA ASP SEQRES 5 C 97 LYS ALA ARG SER VAL VAL ARG ASP LEU ASP PRO SER ASN SEQRES 6 C 97 ASP MET THR PHE LEU ARG VAL ARG SER LYS LYS HIS GLU SEQRES 7 C 97 ILE MET VAL ALA PRO ASP LYS ASP PHE ILE LEU ILE VAL SEQRES 8 C 97 ILE GLN ASN PRO THR ASP SEQRES 1 D 97 MET SER GLN GLU VAL GLU GLU THR LEU LYS ARG ILE GLN SEQRES 2 D 97 SER HIS LYS GLY VAL VAL GLY THR ILE VAL VAL ASN ASN SEQRES 3 D 97 GLU GLY ILE PRO VAL LYS SER THR LEU ASP ASN THR THR SEQRES 4 D 97 THR VAL GLN TYR ALA GLY LEU MET SER GLN LEU ALA ASP SEQRES 5 D 97 LYS ALA ARG SER VAL VAL ARG ASP LEU ASP PRO SER ASN SEQRES 6 D 97 ASP MET THR PHE LEU ARG VAL ARG SER LYS LYS HIS GLU SEQRES 7 D 97 ILE MET VAL ALA PRO ASP LYS ASP PHE ILE LEU ILE VAL SEQRES 8 D 97 ILE GLN ASN PRO THR ASP FORMUL 5 HOH *258(H2 O) HELIX 1 1 LEU A 9 SER A 14 1 6 HELIX 2 2 ASP A 36 ASP A 62 1 27 HELIX 3 3 SER B 2 SER B 14 1 13 HELIX 4 4 ASP B 36 ASP B 62 1 27 HELIX 5 5 VAL C 5 SER C 14 1 10 HELIX 6 6 ASP C 36 ASP C 62 1 27 HELIX 7 7 VAL D 5 SER D 14 1 10 HELIX 8 8 ASP D 36 ASP D 62 1 27 SHEET 1 A10 PRO A 30 SER A 33 0 SHEET 2 A10 VAL A 18 ASN A 25 -1 N VAL A 23 O LYS A 32 SHEET 3 A10 PHE A 87 GLN A 93 -1 O ILE A 92 N VAL A 19 SHEET 4 A10 GLU A 78 ASP A 84 -1 N GLU A 78 O GLN A 93 SHEET 5 A10 MET A 67 SER A 74 -1 N VAL A 72 O ILE A 79 SHEET 6 A10 MET C 67 SER C 74 -1 O ARG C 73 N THR A 68 SHEET 7 A10 GLU C 78 ASP C 84 -1 O ILE C 79 N VAL C 72 SHEET 8 A10 PHE C 87 GLN C 93 -1 O GLN C 93 N GLU C 78 SHEET 9 A10 VAL C 18 ASN C 25 -1 N ILE C 22 O ILE C 90 SHEET 10 A10 PRO C 30 SER C 33 -1 O VAL C 31 N VAL C 23 SHEET 1 B10 PRO B 30 SER B 33 0 SHEET 2 B10 VAL B 18 ASN B 25 -1 N VAL B 23 O VAL B 31 SHEET 3 B10 PHE B 87 GLN B 93 -1 O ILE B 88 N VAL B 24 SHEET 4 B10 GLU B 78 ASP B 84 -1 N GLU B 78 O GLN B 93 SHEET 5 B10 MET B 67 SER B 74 -1 N VAL B 72 O ILE B 79 SHEET 6 B10 MET D 67 SER D 74 -1 O ARG D 73 N THR B 68 SHEET 7 B10 GLU D 78 ASP D 84 -1 O ILE D 79 N VAL D 72 SHEET 8 B10 PHE D 87 GLN D 93 -1 O GLN D 93 N GLU D 78 SHEET 9 B10 VAL D 18 VAL D 24 -1 N VAL D 19 O ILE D 92 SHEET 10 B10 PRO D 30 SER D 33 -1 O VAL D 31 N VAL D 23 CRYST1 56.218 58.693 65.095 90.00 101.80 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017788 0.000000 0.003716 0.00000 SCALE2 0.000000 0.017038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015694 0.00000