HEADER ISOMERASE 29-DEC-09 3L7O TITLE CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE A FROM STREPTOCOCCUS TITLE 2 MUTANS UA159 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-5-PHOSPHATE ISOMERASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHORIBOISOMERASE A, PRI; COMPND 5 EC: 5.3.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: RPIA, SMU_1234; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS RIBOSE-5-PHOSPHATE ISOMERASE A, RPIA, STREPTOCOCCUS MUTANS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.X.FAN,K.T.WANG,X.D.SU REVDAT 4 01-NOV-23 3L7O 1 REMARK REVDAT 3 25-JUL-18 3L7O 1 REMARK REVDAT 2 26-JAN-11 3L7O 1 CRYST1 REVDAT 1 05-JAN-11 3L7O 0 JRNL AUTH X.X.FAN,K.T.WANG,X.D.SU JRNL TITL CRYSTAL STRUCTURE OF RIBOSE-5-PHOSPHATE ISOMERASE A FROM JRNL TITL 2 STREPTOCOCCUS MUTANS UA159 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 95877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5033 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 312 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3463 ; 0.038 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4677 ; 2.536 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;36.541 ;24.717 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 600 ;13.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.223 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2610 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2181 ; 1.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3506 ; 2.503 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 4.039 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1171 ; 6.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 40.6686 5.3333 3.6938 REMARK 3 T TENSOR REMARK 3 T11: 0.0130 T22: 0.0240 REMARK 3 T33: 0.0418 T12: 0.0001 REMARK 3 T13: 0.0070 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0853 L22: 0.2677 REMARK 3 L33: 0.5092 L12: -0.0226 REMARK 3 L13: -0.0077 L23: 0.2044 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0050 S13: -0.0093 REMARK 3 S21: -0.0067 S22: 0.0004 S23: -0.0137 REMARK 3 S31: 0.0239 S32: 0.0035 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 225 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4078 23.0210 22.5033 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: 0.0222 REMARK 3 T33: 0.0326 T12: 0.0138 REMARK 3 T13: 0.0036 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.0621 L22: 0.6999 REMARK 3 L33: 0.3158 L12: 0.0163 REMARK 3 L13: 0.0093 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.0118 S13: -0.0038 REMARK 3 S21: 0.0623 S22: 0.0326 S23: 0.0176 REMARK 3 S31: -0.0191 S32: -0.0157 S33: -0.0225 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE FILE CONTAINS FRIEDEL PAIRS. REMARK 4 REMARK 4 3L7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 106808 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1UJ4 REMARK 200 REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 0.1M NAAC, PH 4.7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.48450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.13350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.54450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.13350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.48450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.54450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 214 REMARK 465 LYS A 215 REMARK 465 ASP A 216 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 76 OG REMARK 470 LYS B 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 264 O HOH A 665 1.67 REMARK 500 O HOH A 321 O HOH A 673 1.68 REMARK 500 O HOH A 565 O HOH A 665 1.69 REMARK 500 O HOH A 293 O HOH A 596 1.70 REMARK 500 O HOH A 339 O HOH A 636 1.77 REMARK 500 O HOH A 658 O HOH B 294 1.77 REMARK 500 O HOH A 369 O HOH A 596 1.82 REMARK 500 O HOH B 649 O HOH B 689 1.91 REMARK 500 CD ARG B 164 O HOH B 686 1.91 REMARK 500 O HOH A 418 O HOH A 624 1.93 REMARK 500 CD ARG B 56 O HOH B 603 1.94 REMARK 500 CG ARG B 164 O HOH B 686 1.95 REMARK 500 O HOH A 259 O HOH A 665 1.95 REMARK 500 O HOH A 658 O HOH B 573 1.97 REMARK 500 CG GLU B 142 O HOH B 662 1.98 REMARK 500 CA VAL A 41 O HOH A 664 1.99 REMARK 500 OE2 GLU B 36 O HOH B 683 2.01 REMARK 500 O HOH A 375 O HOH A 595 2.02 REMARK 500 CD GLU B 36 O HOH B 683 2.05 REMARK 500 OD2 ASP A 72 O HOH A 570 2.06 REMARK 500 O HOH A 546 O HOH A 636 2.11 REMARK 500 O ASP B 75 O HOH B 679 2.12 REMARK 500 O HOH B 523 O HOH B 693 2.12 REMARK 500 CB LEU A 46 O HOH A 664 2.15 REMARK 500 O HOH A 324 O HOH A 374 2.16 REMARK 500 CG2 VAL B 137 O HOH B 687 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA LYS A 225 O HOH B 341 3645 1.94 REMARK 500 O HOH A 255 O HOH B 556 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 44 CD GLU A 44 OE1 0.069 REMARK 500 PHE A 130 CE1 PHE A 130 CZ 0.137 REMARK 500 VAL A 137 CB VAL A 137 CG2 0.131 REMARK 500 ARG A 143 CB ARG A 143 CG -0.176 REMARK 500 PHE A 157 CG PHE A 157 CD2 0.092 REMARK 500 PHE A 165 CD1 PHE A 165 CE1 0.137 REMARK 500 GLU B 2 N GLU B 2 CA 0.138 REMARK 500 GLU B 3 CG GLU B 3 CD 0.110 REMARK 500 ARG B 11 CG ARG B 11 CD 0.156 REMARK 500 ALA B 13 CA ALA B 13 CB -0.138 REMARK 500 SER B 54 CB SER B 54 OG 0.079 REMARK 500 GLU B 73 CG GLU B 73 CD 0.115 REMARK 500 ASP B 75 CB ASP B 75 CG 0.135 REMARK 500 PHE B 91 CE1 PHE B 91 CZ 0.157 REMARK 500 GLU B 120 CG GLU B 120 CD 0.116 REMARK 500 TYR B 139 CE2 TYR B 139 CD2 0.099 REMARK 500 ARG B 143 CB ARG B 143 CG 0.192 REMARK 500 TYR B 153 CD1 TYR B 153 CE1 0.152 REMARK 500 TYR B 160 CE1 TYR B 160 CZ 0.083 REMARK 500 GLN B 194 CG GLN B 194 CD 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 11 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASP B 72 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ASP B 72 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP B 75 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU B 101 CB - CG - CD2 ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU B 102 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B 131 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 131 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 143 CG - CD - NE ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG B 143 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 146 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 164 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 170 41.09 76.56 REMARK 500 ASN A 224 -84.90 -57.69 REMARK 500 LYS B 154 60.73 61.30 REMARK 500 LYS B 170 36.50 73.84 REMARK 500 ASN B 224 72.10 41.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 3L7O A 1 225 UNP Q8DTT9 RPIA_STRMU 1 225 DBREF 3L7O B 1 225 UNP Q8DTT9 RPIA_STRMU 1 225 SEQRES 1 A 225 MET GLU GLU LEU LYS LYS ILE ALA GLY VAL ARG ALA ALA SEQRES 2 A 225 GLN TYR VAL GLU ASP GLY MET ILE VAL GLY LEU GLY THR SEQRES 3 A 225 GLY SER THR ALA TYR TYR PHE VAL GLU GLU VAL GLY ARG SEQRES 4 A 225 ARG VAL GLN GLU GLU GLY LEU GLN VAL ILE GLY VAL THR SEQRES 5 A 225 THR SER SER ARG THR THR ALA GLN ALA GLN ALA LEU GLY SEQRES 6 A 225 ILE PRO LEU LYS SER ILE ASP GLU VAL ASP SER VAL ASP SEQRES 7 A 225 VAL THR VAL ASP GLY ALA ASP GLU VAL ASP PRO ASN PHE SEQRES 8 A 225 ASN GLY ILE LYS GLY GLY GLY GLY ALA LEU LEU MET GLU SEQRES 9 A 225 LYS ILE VAL GLY THR LEU THR LYS ASP TYR ILE TRP VAL SEQRES 10 A 225 VAL ASP GLU SER LYS MET VAL ASP THR LEU GLY ALA PHE SEQRES 11 A 225 ARG LEU PRO VAL GLU VAL VAL GLN TYR GLY ALA GLU ARG SEQRES 12 A 225 LEU PHE ARG GLU PHE GLU LYS LYS GLY TYR LYS PRO SER SEQRES 13 A 225 PHE ARG GLU TYR ASP GLY VAL ARG PHE VAL THR ASP MET SEQRES 14 A 225 LYS ASN PHE ILE ILE ASP LEU ASP LEU GLY SER ILE PRO SEQRES 15 A 225 ASP PRO ILE ALA PHE GLY ASN MET LEU ASP HIS GLN VAL SEQRES 16 A 225 GLY VAL VAL GLU HIS GLY LEU PHE ASN GLY MET VAL ASN SEQRES 17 A 225 ARG VAL ILE VAL ALA GLY LYS ASP GLY VAL ARG ILE LEU SEQRES 18 A 225 GLU ALA ASN LYS SEQRES 1 B 225 MET GLU GLU LEU LYS LYS ILE ALA GLY VAL ARG ALA ALA SEQRES 2 B 225 GLN TYR VAL GLU ASP GLY MET ILE VAL GLY LEU GLY THR SEQRES 3 B 225 GLY SER THR ALA TYR TYR PHE VAL GLU GLU VAL GLY ARG SEQRES 4 B 225 ARG VAL GLN GLU GLU GLY LEU GLN VAL ILE GLY VAL THR SEQRES 5 B 225 THR SER SER ARG THR THR ALA GLN ALA GLN ALA LEU GLY SEQRES 6 B 225 ILE PRO LEU LYS SER ILE ASP GLU VAL ASP SER VAL ASP SEQRES 7 B 225 VAL THR VAL ASP GLY ALA ASP GLU VAL ASP PRO ASN PHE SEQRES 8 B 225 ASN GLY ILE LYS GLY GLY GLY GLY ALA LEU LEU MET GLU SEQRES 9 B 225 LYS ILE VAL GLY THR LEU THR LYS ASP TYR ILE TRP VAL SEQRES 10 B 225 VAL ASP GLU SER LYS MET VAL ASP THR LEU GLY ALA PHE SEQRES 11 B 225 ARG LEU PRO VAL GLU VAL VAL GLN TYR GLY ALA GLU ARG SEQRES 12 B 225 LEU PHE ARG GLU PHE GLU LYS LYS GLY TYR LYS PRO SER SEQRES 13 B 225 PHE ARG GLU TYR ASP GLY VAL ARG PHE VAL THR ASP MET SEQRES 14 B 225 LYS ASN PHE ILE ILE ASP LEU ASP LEU GLY SER ILE PRO SEQRES 15 B 225 ASP PRO ILE ALA PHE GLY ASN MET LEU ASP HIS GLN VAL SEQRES 16 B 225 GLY VAL VAL GLU HIS GLY LEU PHE ASN GLY MET VAL ASN SEQRES 17 B 225 ARG VAL ILE VAL ALA GLY LYS ASP GLY VAL ARG ILE LEU SEQRES 18 B 225 GLU ALA ASN LYS FORMUL 3 HOH *611(H2 O) HELIX 1 1 GLU A 2 GLN A 14 1 13 HELIX 2 2 THR A 29 GLY A 45 1 17 HELIX 3 3 SER A 54 GLY A 65 1 12 HELIX 4 4 SER A 70 VAL A 74 5 5 HELIX 5 5 ALA A 100 LEU A 110 1 11 HELIX 6 6 SER A 121 MET A 123 5 3 HELIX 7 7 GLY A 140 LYS A 151 1 12 HELIX 8 8 ASP A 183 HIS A 193 1 11 HELIX 9 9 GLU B 2 ALA B 13 1 12 HELIX 10 10 GLN B 14 VAL B 16 5 3 HELIX 11 11 THR B 29 GLY B 45 1 17 HELIX 12 12 SER B 54 GLY B 65 1 12 HELIX 13 13 SER B 70 VAL B 74 5 5 HELIX 14 14 ALA B 100 LEU B 110 1 11 HELIX 15 15 SER B 121 MET B 123 5 3 HELIX 16 16 GLY B 140 LYS B 151 1 12 HELIX 17 17 ASP B 183 ASP B 192 1 10 SHEET 1 A 6 ILE A 49 THR A 52 0 SHEET 2 A 6 ILE A 21 LEU A 24 1 N VAL A 22 O ILE A 49 SHEET 3 A 6 VAL A 77 ASP A 82 1 O VAL A 79 N GLY A 23 SHEET 4 A 6 THR A 111 ASP A 119 1 O ILE A 115 N THR A 80 SHEET 5 A 6 ARG A 209 ALA A 213 1 O ILE A 211 N TRP A 116 SHEET 6 A 6 ARG A 219 GLU A 222 -1 O ARG A 219 N VAL A 212 SHEET 1 B 3 GLU A 86 VAL A 87 0 SHEET 2 B 3 GLY A 93 ILE A 94 -1 O ILE A 94 N GLU A 86 SHEET 3 B 3 LEU A 202 PHE A 203 -1 O PHE A 203 N GLY A 93 SHEET 1 C 4 PRO A 155 PHE A 157 0 SHEET 2 C 4 PHE A 172 LEU A 176 -1 O ASP A 175 N SER A 156 SHEET 3 C 4 LEU A 132 VAL A 136 -1 N VAL A 134 O ILE A 174 SHEET 4 C 4 VAL A 197 HIS A 200 -1 O VAL A 198 N GLU A 135 SHEET 1 D 2 GLU A 159 TYR A 160 0 SHEET 2 D 2 VAL A 163 ARG A 164 -1 O VAL A 163 N TYR A 160 SHEET 1 E 6 VAL B 48 THR B 52 0 SHEET 2 E 6 MET B 20 LEU B 24 1 N VAL B 22 O ILE B 49 SHEET 3 E 6 VAL B 77 ASP B 82 1 O VAL B 79 N GLY B 23 SHEET 4 E 6 THR B 111 ASP B 119 1 O ILE B 115 N THR B 80 SHEET 5 E 6 ARG B 209 GLY B 214 1 O ILE B 211 N TRP B 116 SHEET 6 E 6 GLY B 217 GLU B 222 -1 O LEU B 221 N VAL B 210 SHEET 1 F 3 GLU B 86 VAL B 87 0 SHEET 2 F 3 GLY B 93 ILE B 94 -1 O ILE B 94 N GLU B 86 SHEET 3 F 3 LEU B 202 PHE B 203 -1 O PHE B 203 N GLY B 93 SHEET 1 G 4 PRO B 155 PHE B 157 0 SHEET 2 G 4 PHE B 172 LEU B 176 -1 O ASP B 175 N SER B 156 SHEET 3 G 4 LEU B 132 VAL B 136 -1 N VAL B 134 O ILE B 174 SHEET 4 G 4 VAL B 197 HIS B 200 -1 O VAL B 198 N GLU B 135 SHEET 1 H 2 GLU B 159 TYR B 160 0 SHEET 2 H 2 VAL B 163 ARG B 164 -1 O VAL B 163 N TYR B 160 CISPEP 1 GLY A 217 VAL A 218 0 7.59 CRYST1 48.969 101.089 98.267 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020421 0.000000 0.000016 0.00000 SCALE2 0.000000 0.009892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010176 0.00000