HEADER TRANSLATION 29-DEC-09 3L7Q TITLE CRYSTAL STRUCTURE OF ALDR FROM STREPTOCOCCUS MUTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSLATION INITIATION INHIBITOR, ALDR REGULATOR- COMPND 3 LIKE PROTEIN; COMPND 4 CHAIN: A, B, C, D, E, F, G, H, I; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: ALDR, SMU_1308; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALDR, STREPTOCOCCUS MUTANS, TRANSLATION INITIATION INHIBITOR, KEYWDS 2 REGULATOR-LIKE, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR X.X.FAN,K.T.WANG,X.D.SU REVDAT 3 01-NOV-23 3L7Q 1 REMARK REVDAT 2 25-JUL-18 3L7Q 1 REMARK REVDAT 1 29-DEC-10 3L7Q 0 JRNL AUTH X.X.FAN,K.T.WANG,X.D.SU JRNL TITL CRYSTAL STRUCTURE OF ALDR FROM STREPTOCOCCUS MUTANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 38109 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 156 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8532 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.87000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.925 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.549 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8685 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11826 ; 1.367 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1107 ; 8.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 351 ;37.547 ;26.154 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1476 ;19.501 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.668 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1440 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6435 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5580 ; 1.070 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9126 ; 1.987 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3105 ; 2.862 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2700 ; 4.765 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L7Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-002 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40167 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1QD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS-HCL PH8.5, 25.0% REMARK 280 PEG3350, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.56200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.09100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.56200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.09100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 465 MET G 1 REMARK 465 MET H 1 REMARK 465 MET I 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR G 38 N GLN G 40 2.03 REMARK 500 O SER C 97 O HOH C 161 2.12 REMARK 500 NE2 HIS E 70 O HOH E 220 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE LYS H 96 O HOH A 139 4454 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU F 37 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLU I 37 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 15 41.20 -101.45 REMARK 500 SER A 97 -42.98 -135.44 REMARK 500 PRO B 15 36.90 -87.67 REMARK 500 ASP B 80 112.18 -165.12 REMARK 500 LYS B 96 -93.07 -124.11 REMARK 500 SER C 97 -79.03 -130.36 REMARK 500 LYS C 112 8.93 59.22 REMARK 500 ASP D 7 -9.83 -57.08 REMARK 500 ASP D 83 2.05 -69.53 REMARK 500 LYS D 96 -81.34 -97.07 REMARK 500 ARG D 109 145.83 -172.12 REMARK 500 LYS D 112 7.54 56.59 REMARK 500 PRO E 15 47.71 -83.41 REMARK 500 LYS E 96 -83.19 -101.57 REMARK 500 LYS E 112 24.03 43.42 REMARK 500 SER F 97 0.81 -151.65 REMARK 500 LYS F 112 19.86 56.27 REMARK 500 PRO G 33 34.71 -73.46 REMARK 500 SER G 97 -71.06 -142.93 REMARK 500 GLU H 47 -72.35 -49.04 REMARK 500 SER H 97 8.57 156.85 REMARK 500 ARG H 109 141.80 -170.57 REMARK 500 ALA I 11 -173.38 -41.54 REMARK 500 PRO I 15 52.23 -103.48 REMARK 500 PRO I 33 75.58 -66.52 REMARK 500 ALA I 92 -3.78 -50.68 REMARK 500 ASP I 113 23.00 49.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO F 36 GLU F 37 143.64 REMARK 500 GLU F 37 THR F 38 36.04 REMARK 500 ARG H 102 SER H 103 147.07 REMARK 500 PRO I 36 GLU I 37 146.57 REMARK 500 GLU I 37 THR I 38 55.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 3L7Q A 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q B 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q C 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q D 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q E 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q F 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q G 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q H 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 DBREF 3L7Q I 1 125 UNP Q8DTM5 Q8DTM5_STRMU 1 125 SEQRES 1 A 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 A 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 A 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 A 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 A 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 A 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 A 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 A 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 A 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 A 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 B 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 B 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 B 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 B 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 B 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 B 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 B 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 B 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 B 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 B 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 C 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 C 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 C 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 C 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 C 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 C 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 C 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 C 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 C 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 C 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 D 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 D 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 D 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 D 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 D 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 D 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 D 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 D 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 D 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 D 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 E 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 E 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 E 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 E 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 E 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 E 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 E 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 E 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 E 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 E 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 F 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 F 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 F 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 F 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 F 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 F 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 F 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 F 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 F 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 F 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 G 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 G 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 G 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 G 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 G 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 G 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 G 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 G 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 G 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 G 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 H 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 H 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 H 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 H 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 H 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 H 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 H 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 H 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 H 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 H 125 ILE GLU VAL ILE ALA GLU LEU ILE SEQRES 1 I 125 MET LYS LYS ILE HIS THR ASP LYS ALA PRO ALA ALA ILE SEQRES 2 I 125 GLY PRO TYR VAL GLN GLY LYS ILE VAL GLY ASN LEU LEU SEQRES 3 I 125 PHE ALA SER GLY GLN VAL PRO LEU SER PRO GLU THR GLY SEQRES 4 I 125 GLN VAL ILE GLY THR THR ILE GLU GLU GLN THR GLN GLN SEQRES 5 I 125 VAL LEU LYS ASN ILE SER ALA ILE LEU THR GLU ALA GLY SEQRES 6 I 125 THR ASP PHE ASP HIS VAL VAL LYS THR THR CYS PHE LEU SEQRES 7 I 125 SER ASP ILE ASP ASP PHE VAL PRO PHE ASN GLU VAL TYR SEQRES 8 I 125 ALA THR ALA PHE LYS SER ASP PHE PRO ALA ARG SER ALA SEQRES 9 I 125 VAL GLU VAL ALA ARG LEU PRO LYS ASP VAL LYS ILE GLU SEQRES 10 I 125 ILE GLU VAL ILE ALA GLU LEU ILE FORMUL 10 HOH *230(H2 O) HELIX 1 1 THR A 45 GLY A 65 1 21 HELIX 2 2 ASP A 67 ASP A 69 5 3 HELIX 3 3 ASP A 80 ASP A 82 5 3 HELIX 4 4 ASP A 83 THR A 93 1 11 HELIX 5 5 LEU A 110 VAL A 114 5 5 HELIX 6 6 THR B 45 ALA B 64 1 20 HELIX 7 7 ASP B 67 ASP B 69 5 3 HELIX 8 8 ASP B 80 ASP B 82 5 3 HELIX 9 9 ASP B 83 THR B 93 1 11 HELIX 10 10 LEU B 110 VAL B 114 5 5 HELIX 11 11 THR C 45 ALA C 64 1 20 HELIX 12 12 ASP C 67 ASP C 69 5 3 HELIX 13 13 ASP C 80 ASP C 82 5 3 HELIX 14 14 ASP C 83 ALA C 92 1 10 HELIX 15 15 LEU C 110 VAL C 114 5 5 HELIX 16 16 THR D 45 GLY D 65 1 21 HELIX 17 17 ASP D 67 ASP D 69 5 3 HELIX 18 18 ASP D 80 ASP D 82 5 3 HELIX 19 19 ASP D 83 ALA D 92 1 10 HELIX 20 20 THR D 93 PHE D 95 5 3 HELIX 21 21 LEU D 110 VAL D 114 5 5 HELIX 22 22 THR E 45 GLY E 65 1 21 HELIX 23 23 ASP E 67 ASP E 69 5 3 HELIX 24 24 ASP E 80 ASP E 82 5 3 HELIX 25 25 ASP E 83 ALA E 92 1 10 HELIX 26 26 THR E 93 PHE E 95 5 3 HELIX 27 27 LEU E 110 VAL E 114 5 5 HELIX 28 28 THR F 45 GLY F 65 1 21 HELIX 29 29 ASP F 67 ASP F 69 5 3 HELIX 30 30 ASP F 80 ASP F 82 5 3 HELIX 31 31 ASP F 83 PHE F 95 1 13 HELIX 32 32 LEU F 110 VAL F 114 5 5 HELIX 33 33 THR G 45 ALA G 64 1 20 HELIX 34 34 ASP G 67 ASP G 69 5 3 HELIX 35 35 ASP G 80 ASP G 82 5 3 HELIX 36 36 ASP G 83 ALA G 92 1 10 HELIX 37 37 LEU G 110 VAL G 114 5 5 HELIX 38 38 THR H 45 ALA H 64 1 20 HELIX 39 39 ASP H 67 ASP H 69 5 3 HELIX 40 40 ASP H 80 ASP H 82 5 3 HELIX 41 41 ASP H 83 THR H 93 1 11 HELIX 42 42 LEU H 110 VAL H 114 5 5 HELIX 43 43 THR I 45 ALA I 64 1 20 HELIX 44 44 ASP I 67 ASP I 69 5 3 HELIX 45 45 ASP I 80 ASP I 82 5 3 HELIX 46 46 ASP I 83 ALA I 92 1 10 HELIX 47 47 LEU I 110 VAL I 114 5 5 SHEET 1 A 6 LYS A 3 ILE A 4 0 SHEET 2 A 6 GLY A 19 VAL A 22 -1 O GLY A 19 N ILE A 4 SHEET 3 A 6 LEU A 25 GLN A 31 -1 O LEU A 25 N VAL A 22 SHEET 4 A 6 ILE A 116 GLU A 123 -1 O ALA A 122 N LEU A 26 SHEET 5 A 6 VAL A 71 LEU A 78 -1 N PHE A 77 O GLU A 117 SHEET 6 A 6 ALA A 101 GLU A 106 1 O SER A 103 N CYS A 76 SHEET 1 B 6 LYS B 3 ILE B 4 0 SHEET 2 B 6 GLY B 19 VAL B 22 -1 O GLY B 19 N ILE B 4 SHEET 3 B 6 LEU B 25 ALA B 28 -1 O PHE B 27 N LYS B 20 SHEET 4 B 6 ILE B 116 GLU B 123 -1 O ALA B 122 N LEU B 26 SHEET 5 B 6 VAL B 71 LEU B 78 -1 N PHE B 77 O GLU B 117 SHEET 6 B 6 ALA B 101 GLU B 106 1 O VAL B 105 N LEU B 78 SHEET 1 C 6 LYS C 3 ILE C 4 0 SHEET 2 C 6 GLY C 19 VAL C 22 -1 O GLY C 19 N ILE C 4 SHEET 3 C 6 LEU C 25 ALA C 28 -1 O PHE C 27 N LYS C 20 SHEET 4 C 6 ILE C 116 GLU C 123 -1 O ALA C 122 N LEU C 26 SHEET 5 C 6 VAL C 71 LEU C 78 -1 N PHE C 77 O GLU C 117 SHEET 6 C 6 ALA C 101 GLU C 106 1 O SER C 103 N CYS C 76 SHEET 1 D 6 LYS D 3 ILE D 4 0 SHEET 2 D 6 GLY D 19 VAL D 22 -1 O GLY D 19 N ILE D 4 SHEET 3 D 6 LEU D 25 ALA D 28 -1 O LEU D 25 N VAL D 22 SHEET 4 D 6 ILE D 116 GLU D 123 -1 O ALA D 122 N LEU D 26 SHEET 5 D 6 VAL D 71 LEU D 78 -1 N VAL D 72 O ILE D 121 SHEET 6 D 6 ALA D 101 GLU D 106 1 O VAL D 105 N LEU D 78 SHEET 1 E 5 GLY E 19 VAL E 22 0 SHEET 2 E 5 LEU E 25 ALA E 28 -1 O PHE E 27 N LYS E 20 SHEET 3 E 5 ILE E 116 GLU E 123 -1 O ALA E 122 N LEU E 26 SHEET 4 E 5 VAL E 71 LEU E 78 -1 N PHE E 77 O GLU E 117 SHEET 5 E 5 ALA E 101 GLU E 106 1 O SER E 103 N CYS E 76 SHEET 1 F 6 LYS F 3 ILE F 4 0 SHEET 2 F 6 GLY F 19 VAL F 22 -1 O GLY F 19 N ILE F 4 SHEET 3 F 6 LEU F 25 ALA F 28 -1 O PHE F 27 N LYS F 20 SHEET 4 F 6 ILE F 116 GLU F 123 -1 O ALA F 122 N LEU F 26 SHEET 5 F 6 VAL F 71 LEU F 78 -1 N PHE F 77 O GLU F 117 SHEET 6 F 6 ALA F 101 GLU F 106 1 O SER F 103 N CYS F 76 SHEET 1 G 6 LYS G 3 ILE G 4 0 SHEET 2 G 6 GLY G 19 VAL G 22 -1 O GLY G 19 N ILE G 4 SHEET 3 G 6 LEU G 25 ALA G 28 -1 O PHE G 27 N LYS G 20 SHEET 4 G 6 ILE G 116 GLU G 123 -1 O ALA G 122 N LEU G 26 SHEET 5 G 6 VAL G 71 LEU G 78 -1 N VAL G 72 O ILE G 121 SHEET 6 G 6 ALA G 101 GLU G 106 1 O SER G 103 N CYS G 76 SHEET 1 H 6 LYS H 3 ILE H 4 0 SHEET 2 H 6 GLY H 19 VAL H 22 -1 O GLY H 19 N ILE H 4 SHEET 3 H 6 LEU H 25 ALA H 28 -1 O LEU H 25 N VAL H 22 SHEET 4 H 6 ILE H 116 GLU H 123 -1 O ALA H 122 N LEU H 26 SHEET 5 H 6 VAL H 71 LEU H 78 -1 N PHE H 77 O GLU H 117 SHEET 6 H 6 ALA H 101 GLU H 106 1 O VAL H 105 N LEU H 78 SHEET 1 I 5 GLY I 19 VAL I 22 0 SHEET 2 I 5 LEU I 25 ALA I 28 -1 O PHE I 27 N LYS I 20 SHEET 3 I 5 ILE I 116 GLU I 123 -1 O ALA I 122 N LEU I 26 SHEET 4 I 5 VAL I 71 LEU I 78 -1 N VAL I 72 O ILE I 121 SHEET 5 I 5 ALA I 101 GLU I 106 1 O ALA I 101 N VAL I 72 CRYST1 171.124 78.182 102.488 90.00 121.28 90.00 C 1 2 1 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005844 0.000000 0.003550 0.00000 SCALE2 0.000000 0.012791 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011417 0.00000