HEADER TRANSFERASE 30-DEC-09 3L86 TITLE THE CRYSTAL STRUCTURE OF SMU.665 FROM STREPTOCOCCUS MUTANS UA159 CAVEAT 3L86 NLG A 247 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLGLUTAMATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SMU.665, NAG KINASE, AGK, N-ACETYL-L-GLUTAMATE 5- COMPND 5 PHOSPHOTRANSFERASE; COMPND 6 EC: 2.7.2.8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MUTANS; SOURCE 3 ORGANISM_TAXID: 210007; SOURCE 4 STRAIN: UA159; SOURCE 5 GENE: SMU.665; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ARGB, SMU.665, AMINO-ACID BIOSYNTHESIS, ARGININE BIOSYNTHESIS, ATP- KEYWDS 2 BINDING, KINASE, NUCLEOTIDE-BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.-D.SU,X.LIU,C.W.WU REVDAT 2 01-NOV-23 3L86 1 REMARK SEQADV LINK REVDAT 1 05-JAN-11 3L86 0 JRNL AUTH X.-D.SU,X.LIU,C.W.WU JRNL TITL THE CRYSTAL STRUCTURE OF SMU.665 FROM STREPTOCOCCUS MUTANS JRNL TITL 2 UA159 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 829 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 78 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.851 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1858 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2526 ; 2.527 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ;11.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;41.304 ;27.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 326 ;16.284 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 4.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1317 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 1.067 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1943 ; 1.780 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 644 ; 3.044 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 582 ; 4.523 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16492 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GS5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% (W/V) PEG 4000, 0.2M SODIUM REMARK 280 ACETATE, 0.1M TRIS-HCL PH8.0, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.59500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.38000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.59500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.38000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 280 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 47 CD CE NZ REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 GLU A 51 CG CD OE1 OE2 REMARK 470 GLN A 53 CG CD OE1 NE2 REMARK 470 LYS A 57 CD CE NZ REMARK 470 ARG A 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 133 CD OE1 OE2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 193 CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 55 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 100 -78.36 -124.16 REMARK 500 ASP A 113 85.33 177.77 REMARK 500 TYR A 119 35.76 -85.24 REMARK 500 THR A 205 2.23 -68.27 REMARK 500 ALA A 206 29.37 48.30 REMARK 500 ALA A 210 -141.14 49.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 248 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 246 O2A REMARK 620 2 ADP A 246 O1B 90.1 REMARK 620 3 HOH A 262 O 177.0 91.5 REMARK 620 4 HOH A 273 O 92.5 175.1 86.1 REMARK 620 5 HOH A 274 O 94.9 96.0 82.5 87.9 REMARK 620 6 HOH A 275 O 94.7 89.4 87.8 86.3 169.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NLG A 247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 248 DBREF 3L86 A 1 245 UNP Q8DV44 ARGB_STRMU 1 245 SEQADV 3L86 MET A -33 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -32 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -31 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -30 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -29 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -28 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -27 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -26 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -25 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -24 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -23 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -22 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -21 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 LEU A -20 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 VAL A -19 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 PRO A -18 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 ARG A -17 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -16 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -15 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 HIS A -14 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 MET A -13 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 ALA A -12 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A -11 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 MET A -10 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 THR A -9 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -8 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -7 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLN A -6 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLN A -5 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 MET A -4 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -3 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 ARG A -2 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 GLY A -1 UNP Q8DV44 EXPRESSION TAG SEQADV 3L86 SER A 0 UNP Q8DV44 EXPRESSION TAG SEQRES 1 A 279 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 279 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 279 GLY GLN GLN MET GLY ARG GLY SER MET LYS ASP ILE ILE SEQRES 4 A 279 VAL ILE LYS ILE GLY GLY VAL ALA SER GLN GLN LEU SER SEQRES 5 A 279 GLY ASP PHE LEU SER GLN ILE LYS ASN TRP GLN ASP ALA SEQRES 6 A 279 GLY LYS GLN LEU VAL ILE VAL HIS GLY GLY GLY PHE ALA SEQRES 7 A 279 ILE ASN LYS LEU MET GLU GLU ASN GLN VAL PRO VAL LYS SEQRES 8 A 279 LYS ILE ASN GLY LEU ARG VAL THR SER LYS ASP ASP MET SEQRES 9 A 279 VAL LEU VAL SER HIS ALA LEU LEU ASP LEU VAL GLY LYS SEQRES 10 A 279 ASN LEU GLN GLU LYS LEU ARG GLN ALA GLY VAL SER CYS SEQRES 11 A 279 GLN GLN LEU LYS SER ASP ILE LYS HIS VAL VAL ALA ALA SEQRES 12 A 279 ASP TYR LEU ASP LYS ASP THR TYR GLY TYR VAL GLY ASP SEQRES 13 A 279 VAL THR HIS ILE ASN LYS ARG VAL ILE GLU GLU PHE LEU SEQRES 14 A 279 GLU ASN ARG GLN ILE PRO ILE LEU ALA SER LEU GLY TYR SEQRES 15 A 279 SER LYS GLU GLY ASP MET LEU ASN ILE ASN ALA ASP TYR SEQRES 16 A 279 LEU ALA THR ALA VAL ALA VAL ALA LEU ALA ALA ASP LYS SEQRES 17 A 279 LEU ILE LEU MET THR ASN VAL LYS GLY VAL LEU GLU ASN SEQRES 18 A 279 GLY ALA VAL LEU GLU LYS ILE THR SER HIS GLN VAL GLN SEQRES 19 A 279 GLU LYS ILE ASP THR ALA VAL ILE THR ALA GLY MET ILE SEQRES 20 A 279 PRO LYS ILE GLU SER ALA ALA LYS THR VAL ALA ALA GLY SEQRES 21 A 279 VAL GLY GLN VAL LEU ILE GLY ASP ASN LEU LEU THR GLY SEQRES 22 A 279 THR LEU ILE THR ALA ASP HET ADP A 246 27 HET NLG A 247 13 HET MG A 248 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM NLG N-ACETYL-L-GLUTAMATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 NLG C7 H11 N O5 FORMUL 4 MG MG 2+ FORMUL 5 HOH *78(H2 O) HELIX 1 1 VAL A 12 GLN A 16 5 5 HELIX 2 2 SER A 18 ALA A 31 1 14 HELIX 3 3 GLY A 41 ASN A 52 1 12 HELIX 4 4 SER A 66 LEU A 80 1 15 HELIX 5 5 VAL A 81 ALA A 92 1 12 HELIX 6 6 LYS A 100 HIS A 105 5 6 HELIX 7 7 ASP A 113 GLY A 118 1 6 HELIX 8 8 ASN A 127 ASN A 137 1 11 HELIX 9 9 ASN A 158 LEU A 170 1 13 HELIX 10 10 VAL A 199 THR A 205 1 7 HELIX 11 11 GLY A 211 ALA A 225 1 15 SHEET 1 A 8 CYS A 96 GLN A 98 0 SHEET 2 A 8 ILE A 140 ALA A 144 1 O ILE A 142 N GLN A 97 SHEET 3 A 8 GLN A 34 HIS A 39 1 N ILE A 37 O LEU A 143 SHEET 4 A 8 ILE A 4 ILE A 9 1 N ILE A 9 O VAL A 38 SHEET 5 A 8 LYS A 174 MET A 178 1 O ILE A 176 N LYS A 8 SHEET 6 A 8 GLN A 229 GLY A 233 1 O LEU A 231 N LEU A 177 SHEET 7 A 8 THR A 240 THR A 243 -1 O THR A 240 N ILE A 232 SHEET 8 A 8 LYS A 193 THR A 195 1 N ILE A 194 O LEU A 241 SHEET 1 B 2 LYS A 58 ILE A 59 0 SHEET 2 B 2 LEU A 62 ARG A 63 -1 O LEU A 62 N ILE A 59 SHEET 1 C 2 VAL A 107 TYR A 111 0 SHEET 2 C 2 GLY A 121 ILE A 126 -1 O THR A 124 N ALA A 108 SHEET 1 D 2 LEU A 146 TYR A 148 0 SHEET 2 D 2 MET A 154 ASN A 156 -1 O LEU A 155 N GLY A 147 SHEET 1 E 2 LEU A 185 GLU A 186 0 SHEET 2 E 2 ALA A 189 VAL A 190 -1 O ALA A 189 N GLU A 186 LINK O2A ADP A 246 MG MG A 248 1555 1555 2.00 LINK O1B ADP A 246 MG MG A 248 1555 1555 2.13 LINK MG MG A 248 O HOH A 262 1555 1555 2.26 LINK MG MG A 248 O HOH A 273 1555 1555 2.18 LINK MG MG A 248 O HOH A 274 1555 1555 2.24 LINK MG MG A 248 O HOH A 275 1555 1555 2.10 SITE 1 AC1 19 LYS A 8 GLY A 10 GLY A 11 THR A 179 SITE 2 AC1 19 ASN A 180 GLY A 183 LEU A 185 VAL A 207 SITE 3 AC1 19 THR A 209 GLY A 211 MET A 212 LYS A 215 SITE 4 AC1 19 MG A 248 HOH A 250 HOH A 252 HOH A 273 SITE 5 AC1 19 HOH A 275 HOH A 297 HOH A 308 SITE 1 AC2 12 GLY A 40 GLY A 41 GLY A 42 ILE A 45 SITE 2 AC2 12 ARG A 63 SER A 145 ASN A 156 ILE A 157 SITE 3 AC2 12 ASN A 158 ALA A 159 HOH A 262 HOH A 286 SITE 1 AC3 5 ADP A 246 HOH A 262 HOH A 273 HOH A 274 SITE 2 AC3 5 HOH A 275 CRYST1 57.190 94.760 47.580 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010553 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021017 0.00000