HEADER LIGASE 30-DEC-09 3L8C TITLE STRUCTURE OF PROBABLE D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT-1 TITLE 2 FROM STREPTOCOCCUS PYOGENES COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALANINE-ACTIVATING ENZYME, DAE, D-ALANINE-D-ALANYL CARRIER COMPND 5 PROTEIN LIGASE, DCL; COMPND 6 EC: 6.1.1.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES SEROTYPE M6; SOURCE 3 ORGANISM_TAXID: 301450; SOURCE 4 GENE: DLTA, M6_SPY1043; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, D-ALANINE-POLY(PHOSPHORIBITOL) LIGASE, DLTA, KEYWDS 2 ATP-BINDING, CYTOPLASM, LIGASE, NUCLEOTIDE-BINDING, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 21-FEB-24 3L8C 1 REMARK REVDAT 3 10-FEB-21 3L8C 1 AUTHOR JRNL SEQADV REVDAT 2 01-NOV-17 3L8C 1 REMARK REVDAT 1 19-JAN-10 3L8C 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL STRUCTURE OF PROBABLE D-ALANINE--POLY(PHOSPHORIBITOL) LIGASE JRNL TITL 2 SUBUNIT-1 FROM STREPTOCOCCUS PYOGENES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.437 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.098 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8020 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10902 ; 1.512 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1004 ; 6.459 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 337 ;37.419 ;24.837 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1339 ;18.788 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;21.708 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1244 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6035 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5048 ; 0.840 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8173 ; 1.601 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2972 ; 2.216 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2729 ; 3.767 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3L8C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.86800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.51200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.86800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 GLY A 150 REMARK 465 THR A 151 REMARK 465 THR A 152 REMARK 465 TYR A 403 REMARK 465 ALA A 404 REMARK 465 GLY A 405 REMARK 465 TYR A 406 REMARK 465 ARG A 407 REMARK 465 VAL A 438 REMARK 465 GLN A 439 REMARK 465 ASN A 440 REMARK 465 ASN A 507 REMARK 465 ARG A 508 REMARK 465 GLU A 509 REMARK 465 GLY A 510 REMARK 465 HIS A 511 REMARK 465 HIS A 512 REMARK 465 HIS A 513 REMARK 465 HIS A 514 REMARK 465 HIS A 515 REMARK 465 HIS A 516 REMARK 465 MET B -4 REMARK 465 ASN B 507 REMARK 465 ARG B 508 REMARK 465 GLU B 509 REMARK 465 GLY B 510 REMARK 465 HIS B 511 REMARK 465 HIS B 512 REMARK 465 HIS B 513 REMARK 465 HIS B 514 REMARK 465 HIS B 515 REMARK 465 HIS B 516 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 THR A 228 CG2 REMARK 470 GLU A 309 CD OE1 OE2 REMARK 470 ILE A 401 CG1 CG2 CD1 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 ILE A 408 CG1 CG2 CD1 REMARK 470 ASN A 433 CG OD1 ND2 REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 GLU A 435 CG CD OE1 OE2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 LYS A 452 CE NZ REMARK 470 LYS A 499 CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 THR B 151 OG1 CG2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 GLU B 435 CG CD OE1 OE2 REMARK 470 LYS B 452 CE NZ REMARK 470 LYS B 470 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 53.23 -149.87 REMARK 500 LEU A 21 16.99 52.63 REMARK 500 ALA A 57 -121.59 -103.08 REMARK 500 HIS A 135 42.66 -140.51 REMARK 500 GLN A 154 140.21 -175.39 REMARK 500 ALA A 220 -76.46 -62.73 REMARK 500 THR A 298 71.84 61.20 REMARK 500 VAL A 299 -61.76 78.17 REMARK 500 SER A 340 128.53 -36.84 REMARK 500 LYS A 372 47.94 38.19 REMARK 500 ASN A 389 48.22 70.47 REMARK 500 LYS A 434 20.87 -151.66 REMARK 500 GLU A 435 56.53 71.67 REMARK 500 GLN B 12 54.21 -144.99 REMARK 500 LEU B 21 55.60 35.25 REMARK 500 ALA B 57 -119.80 -113.91 REMARK 500 GLU B 128 52.48 37.56 REMARK 500 ALA B 220 4.33 83.94 REMARK 500 ASP B 221 79.80 -113.12 REMARK 500 THR B 298 76.36 58.18 REMARK 500 VAL B 299 -64.56 78.35 REMARK 500 SER B 340 127.17 -26.27 REMARK 500 LYS B 355 -3.43 -58.26 REMARK 500 LYS B 372 47.67 28.95 REMARK 500 ASP B 388 30.68 -87.66 REMARK 500 ASN B 389 35.14 70.76 REMARK 500 ALA B 404 54.70 36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11194C RELATED DB: TARGETDB DBREF 3L8C A -1 508 UNP Q5XBN5 DLTA_STRP6 3 512 DBREF 3L8C B -1 508 UNP Q5XBN5 DLTA_STRP6 3 512 SEQADV 3L8C MET A -4 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C SER A -3 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C LEU A -2 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C GLU A 509 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C GLY A 510 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 511 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 512 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 513 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 514 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 515 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS A 516 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C MET B -4 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C SER B -3 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C LEU B -2 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C GLU B 509 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C GLY B 510 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 511 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 512 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 513 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 514 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 515 UNP Q5XBN5 EXPRESSION TAG SEQADV 3L8C HIS B 516 UNP Q5XBN5 EXPRESSION TAG SEQRES 1 A 521 MET SER LEU LYS ASP MET ILE ASP SER ILE GLU GLN PHE SEQRES 2 A 521 ALA GLN THR GLN ALA ASP PHE PRO VAL TYR ASP CYS LEU SEQRES 3 A 521 GLY GLU ARG ARG THR TYR GLY GLN LEU LYS ARG ASP SER SEQRES 4 A 521 ASP SER ILE ALA ALA PHE ILE ASP SER LEU ALA LEU LEU SEQRES 5 A 521 ALA LYS SER PRO VAL LEU VAL PHE GLY ALA GLN THR TYR SEQRES 6 A 521 ASP MET LEU ALA THR PHE VAL ALA LEU THR LYS SER GLY SEQRES 7 A 521 HIS ALA TYR ILE PRO VAL ASP VAL HIS SER ALA PRO GLU SEQRES 8 A 521 ARG ILE LEU ALA ILE ILE GLU ILE ALA LYS PRO SER LEU SEQRES 9 A 521 ILE ILE ALA ILE GLU GLU PHE PRO LEU THR ILE GLU GLY SEQRES 10 A 521 ILE SER LEU VAL SER LEU SER GLU ILE GLU SER ALA LYS SEQRES 11 A 521 LEU ALA GLU MET PRO TYR GLU ARG THR HIS SER VAL LYS SEQRES 12 A 521 GLY ASP ASP ASN TYR TYR ILE ILE PHE THR SER GLY THR SEQRES 13 A 521 THR GLY GLN PRO LYS GLY VAL GLN ILE SER HIS ASP ASN SEQRES 14 A 521 LEU LEU SER PHE THR ASN TRP MET ILE GLU ASP ALA ALA SEQRES 15 A 521 PHE ASP VAL PRO LYS GLN PRO GLN MET LEU ALA GLN PRO SEQRES 16 A 521 PRO TYR SER PHE ASP LEU SER VAL MET TYR TRP ALA PRO SEQRES 17 A 521 THR LEU ALA LEU GLY GLY THR LEU PHE ALA LEU PRO LYS SEQRES 18 A 521 GLU LEU VAL ALA ASP PHE LYS GLN LEU PHE THR THR ILE SEQRES 19 A 521 ALA GLN LEU PRO VAL GLY ILE TRP THR SER THR PRO SER SEQRES 20 A 521 PHE ALA ASP MET ALA MET LEU SER ASP ASP PHE CYS GLN SEQRES 21 A 521 ALA LYS MET PRO ALA LEU THR HIS PHE TYR PHE ASP GLY SEQRES 22 A 521 GLU GLU LEU THR VAL SER THR ALA ARG LYS LEU PHE GLU SEQRES 23 A 521 ARG PHE PRO SER ALA LYS ILE ILE ASN ALA TYR GLY PRO SEQRES 24 A 521 THR GLU ALA THR VAL ALA LEU SER ALA ILE GLU ILE THR SEQRES 25 A 521 ARG GLU MET VAL ASP ASN TYR THR ARG LEU PRO ILE GLY SEQRES 26 A 521 TYR PRO LYS PRO ASP SER PRO THR TYR ILE ILE ASP GLU SEQRES 27 A 521 ASP GLY LYS GLU LEU SER SER GLY GLU GLN GLY GLU ILE SEQRES 28 A 521 ILE VAL THR GLY PRO ALA VAL SER LYS GLY TYR LEU ASN SEQRES 29 A 521 ASN PRO GLU LYS THR ALA GLU ALA PHE PHE THR PHE LYS SEQRES 30 A 521 GLY GLN PRO ALA TYR HIS THR GLY ASP ILE GLY SER LEU SEQRES 31 A 521 THR GLU ASP ASN ILE LEU LEU TYR GLY GLY ARG LEU ASP SEQRES 32 A 521 PHE GLN ILE LYS TYR ALA GLY TYR ARG ILE GLU LEU GLU SEQRES 33 A 521 ASP VAL SER GLN GLN LEU ASN GLN SER PRO MET VAL ALA SEQRES 34 A 521 SER ALA VAL ALA VAL PRO ARG TYR ASN LYS GLU HIS LYS SEQRES 35 A 521 VAL GLN ASN LEU LEU ALA TYR ILE VAL VAL LYS ASP GLY SEQRES 36 A 521 VAL LYS GLU ARG PHE ASP ARG GLU LEU GLU LEU THR LYS SEQRES 37 A 521 ALA ILE LYS ALA SER VAL LYS ASP HIS MET MET SER TYR SEQRES 38 A 521 MET MET PRO SER LYS PHE LEU TYR ARG ASP SER LEU PRO SEQRES 39 A 521 LEU THR PRO ASN GLY LYS ILE ASP ILE LYS THR LEU ILE SEQRES 40 A 521 ASN GLU VAL ASN ASN ARG GLU GLY HIS HIS HIS HIS HIS SEQRES 41 A 521 HIS SEQRES 1 B 521 MET SER LEU LYS ASP MET ILE ASP SER ILE GLU GLN PHE SEQRES 2 B 521 ALA GLN THR GLN ALA ASP PHE PRO VAL TYR ASP CYS LEU SEQRES 3 B 521 GLY GLU ARG ARG THR TYR GLY GLN LEU LYS ARG ASP SER SEQRES 4 B 521 ASP SER ILE ALA ALA PHE ILE ASP SER LEU ALA LEU LEU SEQRES 5 B 521 ALA LYS SER PRO VAL LEU VAL PHE GLY ALA GLN THR TYR SEQRES 6 B 521 ASP MET LEU ALA THR PHE VAL ALA LEU THR LYS SER GLY SEQRES 7 B 521 HIS ALA TYR ILE PRO VAL ASP VAL HIS SER ALA PRO GLU SEQRES 8 B 521 ARG ILE LEU ALA ILE ILE GLU ILE ALA LYS PRO SER LEU SEQRES 9 B 521 ILE ILE ALA ILE GLU GLU PHE PRO LEU THR ILE GLU GLY SEQRES 10 B 521 ILE SER LEU VAL SER LEU SER GLU ILE GLU SER ALA LYS SEQRES 11 B 521 LEU ALA GLU MET PRO TYR GLU ARG THR HIS SER VAL LYS SEQRES 12 B 521 GLY ASP ASP ASN TYR TYR ILE ILE PHE THR SER GLY THR SEQRES 13 B 521 THR GLY GLN PRO LYS GLY VAL GLN ILE SER HIS ASP ASN SEQRES 14 B 521 LEU LEU SER PHE THR ASN TRP MET ILE GLU ASP ALA ALA SEQRES 15 B 521 PHE ASP VAL PRO LYS GLN PRO GLN MET LEU ALA GLN PRO SEQRES 16 B 521 PRO TYR SER PHE ASP LEU SER VAL MET TYR TRP ALA PRO SEQRES 17 B 521 THR LEU ALA LEU GLY GLY THR LEU PHE ALA LEU PRO LYS SEQRES 18 B 521 GLU LEU VAL ALA ASP PHE LYS GLN LEU PHE THR THR ILE SEQRES 19 B 521 ALA GLN LEU PRO VAL GLY ILE TRP THR SER THR PRO SER SEQRES 20 B 521 PHE ALA ASP MET ALA MET LEU SER ASP ASP PHE CYS GLN SEQRES 21 B 521 ALA LYS MET PRO ALA LEU THR HIS PHE TYR PHE ASP GLY SEQRES 22 B 521 GLU GLU LEU THR VAL SER THR ALA ARG LYS LEU PHE GLU SEQRES 23 B 521 ARG PHE PRO SER ALA LYS ILE ILE ASN ALA TYR GLY PRO SEQRES 24 B 521 THR GLU ALA THR VAL ALA LEU SER ALA ILE GLU ILE THR SEQRES 25 B 521 ARG GLU MET VAL ASP ASN TYR THR ARG LEU PRO ILE GLY SEQRES 26 B 521 TYR PRO LYS PRO ASP SER PRO THR TYR ILE ILE ASP GLU SEQRES 27 B 521 ASP GLY LYS GLU LEU SER SER GLY GLU GLN GLY GLU ILE SEQRES 28 B 521 ILE VAL THR GLY PRO ALA VAL SER LYS GLY TYR LEU ASN SEQRES 29 B 521 ASN PRO GLU LYS THR ALA GLU ALA PHE PHE THR PHE LYS SEQRES 30 B 521 GLY GLN PRO ALA TYR HIS THR GLY ASP ILE GLY SER LEU SEQRES 31 B 521 THR GLU ASP ASN ILE LEU LEU TYR GLY GLY ARG LEU ASP SEQRES 32 B 521 PHE GLN ILE LYS TYR ALA GLY TYR ARG ILE GLU LEU GLU SEQRES 33 B 521 ASP VAL SER GLN GLN LEU ASN GLN SER PRO MET VAL ALA SEQRES 34 B 521 SER ALA VAL ALA VAL PRO ARG TYR ASN LYS GLU HIS LYS SEQRES 35 B 521 VAL GLN ASN LEU LEU ALA TYR ILE VAL VAL LYS ASP GLY SEQRES 36 B 521 VAL LYS GLU ARG PHE ASP ARG GLU LEU GLU LEU THR LYS SEQRES 37 B 521 ALA ILE LYS ALA SER VAL LYS ASP HIS MET MET SER TYR SEQRES 38 B 521 MET MET PRO SER LYS PHE LEU TYR ARG ASP SER LEU PRO SEQRES 39 B 521 LEU THR PRO ASN GLY LYS ILE ASP ILE LYS THR LEU ILE SEQRES 40 B 521 ASN GLU VAL ASN ASN ARG GLU GLY HIS HIS HIS HIS HIS SEQRES 41 B 521 HIS FORMUL 3 HOH *105(H2 O) HELIX 1 1 ASP A 0 GLN A 12 1 13 HELIX 2 2 TYR A 27 LEU A 44 1 18 HELIX 3 3 THR A 59 SER A 72 1 14 HELIX 4 4 ALA A 84 ALA A 95 1 12 HELIX 5 5 LEU A 118 GLU A 128 1 11 HELIX 6 6 HIS A 162 ASP A 175 1 14 HELIX 7 7 PHE A 194 LEU A 196 5 3 HELIX 8 8 SER A 197 LEU A 207 1 11 HELIX 9 9 PRO A 215 VAL A 219 5 5 HELIX 10 10 ASP A 221 LEU A 232 1 12 HELIX 11 11 THR A 240 LEU A 249 1 10 HELIX 12 12 THR A 272 PHE A 283 1 12 HELIX 13 13 PRO A 294 THR A 298 5 5 HELIX 14 14 THR A 307 TYR A 314 1 8 HELIX 15 15 ASN A 360 ALA A 367 1 8 HELIX 16 16 ASP A 398 GLN A 400 5 3 HELIX 17 17 GLU A 409 GLN A 419 1 11 HELIX 18 18 VAL A 451 PHE A 455 5 5 HELIX 19 19 ARG A 457 VAL A 469 1 13 HELIX 20 20 LYS A 470 MET A 473 5 4 HELIX 21 21 MET A 474 MET A 478 5 5 HELIX 22 22 ASP A 497 VAL A 505 1 9 HELIX 23 23 ASP B 0 GLN B 12 1 13 HELIX 24 24 TYR B 27 SER B 43 1 17 HELIX 25 25 THR B 59 SER B 72 1 14 HELIX 26 26 ALA B 84 LYS B 96 1 13 HELIX 27 27 LEU B 118 ALA B 127 1 10 HELIX 28 28 HIS B 162 ASP B 175 1 14 HELIX 29 29 PHE B 194 LEU B 196 5 3 HELIX 30 30 SER B 197 GLY B 208 1 12 HELIX 31 31 ASP B 221 ALA B 230 1 10 HELIX 32 32 THR B 240 MET B 248 1 9 HELIX 33 33 THR B 272 PHE B 283 1 12 HELIX 34 34 PRO B 294 THR B 298 5 5 HELIX 35 35 THR B 307 TYR B 314 1 8 HELIX 36 36 ASN B 360 ALA B 367 1 8 HELIX 37 37 LEU B 410 ASN B 418 1 9 HELIX 38 38 VAL B 451 PHE B 455 5 5 HELIX 39 39 ARG B 457 LYS B 470 1 14 HELIX 40 40 ASP B 471 MET B 473 5 3 HELIX 41 41 ASP B 497 ASN B 506 1 10 SHEET 1 A 4 GLU A 23 THR A 26 0 SHEET 2 A 4 PRO A 16 CYS A 20 -1 N CYS A 20 O GLU A 23 SHEET 3 A 4 THR A 210 ALA A 213 1 O LEU A 211 N ASP A 19 SHEET 4 A 4 GLN A 185 LEU A 187 1 N MET A 186 O THR A 210 SHEET 1 B 4 TYR A 76 ASP A 80 0 SHEET 2 B 4 VAL A 52 GLY A 56 1 N VAL A 52 O ILE A 77 SHEET 3 B 4 LEU A 99 ALA A 102 1 O ILE A 101 N LEU A 53 SHEET 4 B 4 SER A 114 SER A 117 1 O VAL A 116 N ALA A 102 SHEET 1 C 2 ASN A 142 PHE A 147 0 SHEET 2 C 2 GLY A 157 SER A 161 -1 O ILE A 160 N TYR A 143 SHEET 1 D 9 ILE A 236 SER A 239 0 SHEET 2 D 9 HIS A 263 PHE A 266 1 O TYR A 265 N TRP A 237 SHEET 3 D 9 LYS A 287 TYR A 292 1 O ILE A 289 N PHE A 264 SHEET 4 D 9 SER A 302 ILE A 306 -1 O ILE A 306 N ILE A 288 SHEET 5 D 9 PRO A 318 PRO A 322 -1 O TYR A 321 N ALA A 303 SHEET 6 D 9 LEU A 391 ARG A 396 -1 O LEU A 391 N GLY A 320 SHEET 7 D 9 GLN A 374 LEU A 385 -1 N ILE A 382 O GLY A 395 SHEET 8 D 9 GLY A 344 THR A 349 -1 N ILE A 346 O ASP A 381 SHEET 9 D 9 THR A 328 ILE A 331 -1 N TYR A 329 O ILE A 347 SHEET 1 E 8 ILE A 236 SER A 239 0 SHEET 2 E 8 HIS A 263 PHE A 266 1 O TYR A 265 N TRP A 237 SHEET 3 E 8 LYS A 287 TYR A 292 1 O ILE A 289 N PHE A 264 SHEET 4 E 8 SER A 302 ILE A 306 -1 O ILE A 306 N ILE A 288 SHEET 5 E 8 PRO A 318 PRO A 322 -1 O TYR A 321 N ALA A 303 SHEET 6 E 8 LEU A 391 ARG A 396 -1 O LEU A 391 N GLY A 320 SHEET 7 E 8 GLN A 374 LEU A 385 -1 N ILE A 382 O GLY A 395 SHEET 8 E 8 PHE A 368 PHE A 371 -1 N PHE A 369 O ALA A 376 SHEET 1 F 3 VAL A 423 VAL A 429 0 SHEET 2 F 3 LEU A 442 VAL A 447 -1 O VAL A 446 N ALA A 424 SHEET 3 F 3 LYS A 481 TYR A 484 1 O LEU A 483 N ALA A 443 SHEET 1 G 4 GLU B 23 THR B 26 0 SHEET 2 G 4 PRO B 16 CYS B 20 -1 N VAL B 17 O ARG B 25 SHEET 3 G 4 THR B 210 ALA B 213 1 O LEU B 211 N VAL B 17 SHEET 4 G 4 GLN B 185 LEU B 187 1 N MET B 186 O PHE B 212 SHEET 1 H 4 TYR B 76 ASP B 80 0 SHEET 2 H 4 VAL B 52 GLY B 56 1 N VAL B 54 O VAL B 79 SHEET 3 H 4 LEU B 99 ALA B 102 1 O ILE B 101 N LEU B 53 SHEET 4 H 4 LEU B 115 SER B 117 1 O VAL B 116 N ILE B 100 SHEET 1 I 2 ASN B 142 PHE B 147 0 SHEET 2 I 2 GLY B 157 SER B 161 -1 O ILE B 160 N TYR B 143 SHEET 1 J 5 ILE B 236 SER B 239 0 SHEET 2 J 5 HIS B 263 PHE B 266 1 O TYR B 265 N TRP B 237 SHEET 3 J 5 LYS B 287 TYR B 292 1 O ILE B 289 N PHE B 264 SHEET 4 J 5 SER B 302 ILE B 306 -1 O ILE B 306 N ILE B 288 SHEET 5 J 5 TYR B 321 PRO B 322 -1 O TYR B 321 N ALA B 303 SHEET 1 K 4 THR B 328 ILE B 331 0 SHEET 2 K 4 GLY B 344 THR B 349 -1 O GLU B 345 N ILE B 331 SHEET 3 K 4 GLN B 374 LEU B 385 -1 O ASP B 381 N ILE B 346 SHEET 4 K 4 PHE B 368 PHE B 371 -1 N PHE B 369 O ALA B 376 SHEET 1 L 4 THR B 328 ILE B 331 0 SHEET 2 L 4 GLY B 344 THR B 349 -1 O GLU B 345 N ILE B 331 SHEET 3 L 4 GLN B 374 LEU B 385 -1 O ASP B 381 N ILE B 346 SHEET 4 L 4 LEU B 391 ARG B 396 -1 O GLY B 395 N ILE B 382 SHEET 1 M 2 GLN B 400 TYR B 403 0 SHEET 2 M 2 TYR B 406 GLU B 409 -1 O ILE B 408 N ILE B 401 SHEET 1 N 3 VAL B 423 TYR B 432 0 SHEET 2 N 3 VAL B 438 VAL B 447 -1 O LEU B 442 N VAL B 429 SHEET 3 N 3 LYS B 481 TYR B 484 1 O LEU B 483 N ALA B 443 CRYST1 89.024 153.736 84.794 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011233 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011793 0.00000