HEADER HYDROLASE 31-DEC-09 3L8H TITLE CRYSTAL STRUCTURE OF D,D-HEPTOSE 1.7-BISPHOSPHATE PHOSPHATASE FROM B. TITLE 2 BRONCHISEPTICA COMPLEXED WITH MAGNESIUM AND PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HALOACID DEHALOGENASE-LIKE HYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA; SOURCE 3 ORGANISM_COMMON: ALCALIGENES BRONCHISEPTICUS; SOURCE 4 ORGANISM_TAXID: 518; SOURCE 5 GENE: BB4091, GMHB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B-834; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3 KEYWDS HAD SUPERFAMILY, GMHB, D-GLYCERO-D-MANNO-HEPTOSE-1, 7-BISPHOSPHATE KEYWDS 2 PHOSPHATASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.NGUYEN,E.PEISACH,K.N.ALLEN REVDAT 5 29-JUL-20 3L8H 1 REMARK LINK SITE REVDAT 4 01-NOV-17 3L8H 1 REMARK REVDAT 3 05-OCT-11 3L8H 1 TITLE REVDAT 2 23-FEB-10 3L8H 1 JRNL REVDAT 1 02-FEB-10 3L8H 0 JRNL AUTH H.H.NGUYEN,L.WANG,H.HUANG,E.PEISACH,D.DUNAWAY-MARIANO, JRNL AUTH 2 K.N.ALLEN JRNL TITL STRUCTURAL DETERMINANTS OF SUBSTRATE RECOGNITION IN THE HAD JRNL TITL 2 SUPERFAMILY MEMBER JRNL TITL 3 D-GLYCERO-D-MANNO-HEPTOSE-1,7-BISPHOSPHATE PHOSPHATASE JRNL TITL 4 (GMHB) . JRNL REF BIOCHEMISTRY V. 49 1082 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 20050614 JRNL DOI 10.1021/BI902019Q REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 147262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.720 REMARK 3 FREE R VALUE TEST SET COUNT : 14317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1782 - 5.2036 0.98 4955 548 0.1939 0.1964 REMARK 3 2 5.2036 - 4.1340 0.99 5024 491 0.1579 0.1854 REMARK 3 3 4.1340 - 3.6125 0.97 4898 532 0.1501 0.1752 REMARK 3 4 3.6125 - 3.2827 0.97 4892 537 0.1504 0.1737 REMARK 3 5 3.2827 - 3.0477 0.97 4898 521 0.1596 0.1901 REMARK 3 6 3.0477 - 2.8682 0.97 4831 540 0.1753 0.1944 REMARK 3 7 2.8682 - 2.7246 0.96 4798 561 0.1662 0.1902 REMARK 3 8 2.7246 - 2.6061 0.97 4964 520 0.1691 0.2092 REMARK 3 9 2.6061 - 2.5058 0.96 4818 505 0.1718 0.2048 REMARK 3 10 2.5058 - 2.4194 0.96 4775 557 0.1679 0.2037 REMARK 3 11 2.4194 - 2.3438 0.96 4800 532 0.1647 0.2184 REMARK 3 12 2.3438 - 2.2768 0.95 4774 565 0.1718 0.2009 REMARK 3 13 2.2768 - 2.2169 0.95 4750 530 0.1597 0.2022 REMARK 3 14 2.2169 - 2.1628 0.95 4766 553 0.1641 0.1894 REMARK 3 15 2.1628 - 2.1137 0.94 4743 489 0.1513 0.1994 REMARK 3 16 2.1137 - 2.0687 0.94 4706 530 0.1649 0.2284 REMARK 3 17 2.0687 - 2.0273 0.92 4574 528 0.1712 0.1957 REMARK 3 18 2.0273 - 1.9891 0.93 4772 459 0.1706 0.2034 REMARK 3 19 1.9891 - 1.9536 0.92 4574 546 0.1671 0.2076 REMARK 3 20 1.9536 - 1.9205 0.89 4503 483 0.1747 0.1941 REMARK 3 21 1.9205 - 1.8895 0.89 4439 496 0.1815 0.2199 REMARK 3 22 1.8895 - 1.8604 0.86 4424 454 0.1773 0.2271 REMARK 3 23 1.8604 - 1.8331 0.87 4359 478 0.1882 0.2141 REMARK 3 24 1.8331 - 1.8073 0.83 4134 376 0.1918 0.1924 REMARK 3 25 1.8073 - 1.7828 0.78 4038 415 0.1940 0.2287 REMARK 3 26 1.7828 - 1.7597 0.74 3709 384 0.1919 0.2283 REMARK 3 27 1.7597 - 1.7377 0.69 3490 365 0.1957 0.2228 REMARK 3 28 1.7377 - 1.7168 0.63 3160 312 0.2129 0.2498 REMARK 3 29 1.7168 - 1.6968 0.56 2896 303 0.2092 0.2175 REMARK 3 30 1.6968 - 1.6800 0.49 2482 207 0.2103 0.2455 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 46.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.02300 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : 2.15300 REMARK 3 B12 (A**2) : -1.49300 REMARK 3 B13 (A**2) : 4.00200 REMARK 3 B23 (A**2) : 1.02900 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5457 REMARK 3 ANGLE : 1.127 7419 REMARK 3 CHIRALITY : 0.070 843 REMARK 3 PLANARITY : 0.005 989 REMARK 3 DIHEDRAL : 16.407 1980 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L8H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI (1,1,1) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147263 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 5MM MG FORMATE, 25% PEG REMARK 280 3350, 5% DIOXANE, 100MM SACROSINE, PH 7.5, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 686 O HOH D 552 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 8 -73.66 -99.50 REMARK 500 VAL A 11 -58.22 -125.68 REMARK 500 PHE A 19 153.82 69.12 REMARK 500 ARG B 8 -75.61 -97.79 REMARK 500 VAL B 11 -56.63 -123.50 REMARK 500 PHE B 19 155.15 71.20 REMARK 500 ARG C 8 -73.80 -96.15 REMARK 500 VAL C 11 -54.62 -123.54 REMARK 500 PHE C 19 149.70 78.35 REMARK 500 ARG D 8 -75.15 -95.17 REMARK 500 VAL D 11 -52.42 -125.63 REMARK 500 PHE D 19 150.38 76.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 9 O 91.2 REMARK 620 3 ASP A 126 OD1 87.8 89.4 REMARK 620 4 HOH A 181 O 87.5 171.6 82.2 REMARK 620 5 HOH A 188 O 176.8 89.8 89.2 91.1 REMARK 620 6 PO4 A2001 O1 92.0 98.0 172.6 90.4 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 89 SG REMARK 620 2 HIS A 91 ND1 109.0 REMARK 620 3 CYS A 97 SG 111.7 96.8 REMARK 620 4 CYS A 99 SG 120.9 103.7 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD2 REMARK 620 2 HOH A 184 O 92.2 REMARK 620 3 HOH A 200 O 87.3 81.9 REMARK 620 4 HOH A 637 O 127.5 53.9 53.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD2 REMARK 620 2 ASP B 9 O 90.8 REMARK 620 3 ASP B 126 OD1 89.7 86.9 REMARK 620 4 HOH B 186 O 89.1 170.3 83.5 REMARK 620 5 HOH B 194 O 176.5 89.5 86.8 90.0 REMARK 620 6 PO4 B2002 O3 91.0 99.3 173.7 90.3 92.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 89 SG REMARK 620 2 HIS B 91 ND1 110.1 REMARK 620 3 CYS B 97 SG 109.0 99.4 REMARK 620 4 CYS B 99 SG 122.6 101.5 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 7 OD2 REMARK 620 2 ASP C 9 O 91.9 REMARK 620 3 ASP C 126 OD1 88.9 90.6 REMARK 620 4 HOH C 180 O 176.2 88.5 87.4 REMARK 620 5 HOH C 185 O 89.4 175.4 85.0 90.0 REMARK 620 6 PO4 C2003 O2 92.8 96.3 172.8 90.9 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 89 SG REMARK 620 2 HIS C 91 ND1 111.9 REMARK 620 3 CYS C 97 SG 111.1 100.4 REMARK 620 4 CYS C 99 SG 118.4 101.3 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 804 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 7 OD2 REMARK 620 2 ASP D 9 O 94.7 REMARK 620 3 ASP D 126 OD1 87.1 89.7 REMARK 620 4 HOH D 181 O 174.5 88.8 88.7 REMARK 620 5 HOH D 200 O 85.7 171.6 81.9 90.2 REMARK 620 6 PO4 D2004 O4 91.9 99.4 170.8 91.7 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 89 SG REMARK 620 2 HIS D 91 ND1 108.5 REMARK 620 3 CYS D 97 SG 110.5 100.9 REMARK 620 4 CYS D 99 SG 121.1 102.1 111.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L8E RELATED DB: PDB REMARK 900 RELATED ID: 3L8F RELATED DB: PDB REMARK 900 RELATED ID: 3L8G RELATED DB: PDB DBREF 3L8H A 1 179 UNP Q7WG29 Q7WG29_BORBR 1 179 DBREF 3L8H B 1 179 UNP Q7WG29 Q7WG29_BORBR 1 179 DBREF 3L8H C 1 179 UNP Q7WG29 Q7WG29_BORBR 1 179 DBREF 3L8H D 1 179 UNP Q7WG29 Q7WG29_BORBR 1 179 SEQRES 1 A 179 MSE LYS LEU ILE ILE LEU ASP ARG ASP GLY VAL VAL ASN SEQRES 2 A 179 GLN ASP SER ASP ALA PHE VAL LYS SER PRO ASP GLU TRP SEQRES 3 A 179 ILE ALA LEU PRO GLY SER LEU GLN ALA ILE ALA ARG LEU SEQRES 4 A 179 THR GLN ALA ASP TRP THR VAL VAL LEU ALA THR ASN GLN SEQRES 5 A 179 SER GLY LEU ALA ARG GLY LEU PHE ASP THR ALA THR LEU SEQRES 6 A 179 ASN ALA ILE HIS ASP LYS MSE HIS ARG ALA LEU ALA GLN SEQRES 7 A 179 MSE GLY GLY VAL VAL ASP ALA ILE PHE MSE CYS PRO HIS SEQRES 8 A 179 GLY PRO ASP ASP GLY CYS ALA CYS ARG LYS PRO LEU PRO SEQRES 9 A 179 GLY MSE TYR ARG ASP ILE ALA ARG ARG TYR ASP VAL ASP SEQRES 10 A 179 LEU ALA GLY VAL PRO ALA VAL GLY ASP SER LEU ARG ASP SEQRES 11 A 179 LEU GLN ALA ALA ALA GLN ALA GLY CYS ALA PRO TRP LEU SEQRES 12 A 179 VAL GLN THR GLY ASN GLY ARG LYS THR LEU ALA GLN GLY SEQRES 13 A 179 GLY LEU PRO GLU GLY THR ARG VAL CYS GLU ASP LEU ALA SEQRES 14 A 179 ALA VAL ALA GLU GLN LEU LEU GLN GLU ALA SEQRES 1 B 179 MSE LYS LEU ILE ILE LEU ASP ARG ASP GLY VAL VAL ASN SEQRES 2 B 179 GLN ASP SER ASP ALA PHE VAL LYS SER PRO ASP GLU TRP SEQRES 3 B 179 ILE ALA LEU PRO GLY SER LEU GLN ALA ILE ALA ARG LEU SEQRES 4 B 179 THR GLN ALA ASP TRP THR VAL VAL LEU ALA THR ASN GLN SEQRES 5 B 179 SER GLY LEU ALA ARG GLY LEU PHE ASP THR ALA THR LEU SEQRES 6 B 179 ASN ALA ILE HIS ASP LYS MSE HIS ARG ALA LEU ALA GLN SEQRES 7 B 179 MSE GLY GLY VAL VAL ASP ALA ILE PHE MSE CYS PRO HIS SEQRES 8 B 179 GLY PRO ASP ASP GLY CYS ALA CYS ARG LYS PRO LEU PRO SEQRES 9 B 179 GLY MSE TYR ARG ASP ILE ALA ARG ARG TYR ASP VAL ASP SEQRES 10 B 179 LEU ALA GLY VAL PRO ALA VAL GLY ASP SER LEU ARG ASP SEQRES 11 B 179 LEU GLN ALA ALA ALA GLN ALA GLY CYS ALA PRO TRP LEU SEQRES 12 B 179 VAL GLN THR GLY ASN GLY ARG LYS THR LEU ALA GLN GLY SEQRES 13 B 179 GLY LEU PRO GLU GLY THR ARG VAL CYS GLU ASP LEU ALA SEQRES 14 B 179 ALA VAL ALA GLU GLN LEU LEU GLN GLU ALA SEQRES 1 C 179 MSE LYS LEU ILE ILE LEU ASP ARG ASP GLY VAL VAL ASN SEQRES 2 C 179 GLN ASP SER ASP ALA PHE VAL LYS SER PRO ASP GLU TRP SEQRES 3 C 179 ILE ALA LEU PRO GLY SER LEU GLN ALA ILE ALA ARG LEU SEQRES 4 C 179 THR GLN ALA ASP TRP THR VAL VAL LEU ALA THR ASN GLN SEQRES 5 C 179 SER GLY LEU ALA ARG GLY LEU PHE ASP THR ALA THR LEU SEQRES 6 C 179 ASN ALA ILE HIS ASP LYS MSE HIS ARG ALA LEU ALA GLN SEQRES 7 C 179 MSE GLY GLY VAL VAL ASP ALA ILE PHE MSE CYS PRO HIS SEQRES 8 C 179 GLY PRO ASP ASP GLY CYS ALA CYS ARG LYS PRO LEU PRO SEQRES 9 C 179 GLY MSE TYR ARG ASP ILE ALA ARG ARG TYR ASP VAL ASP SEQRES 10 C 179 LEU ALA GLY VAL PRO ALA VAL GLY ASP SER LEU ARG ASP SEQRES 11 C 179 LEU GLN ALA ALA ALA GLN ALA GLY CYS ALA PRO TRP LEU SEQRES 12 C 179 VAL GLN THR GLY ASN GLY ARG LYS THR LEU ALA GLN GLY SEQRES 13 C 179 GLY LEU PRO GLU GLY THR ARG VAL CYS GLU ASP LEU ALA SEQRES 14 C 179 ALA VAL ALA GLU GLN LEU LEU GLN GLU ALA SEQRES 1 D 179 MSE LYS LEU ILE ILE LEU ASP ARG ASP GLY VAL VAL ASN SEQRES 2 D 179 GLN ASP SER ASP ALA PHE VAL LYS SER PRO ASP GLU TRP SEQRES 3 D 179 ILE ALA LEU PRO GLY SER LEU GLN ALA ILE ALA ARG LEU SEQRES 4 D 179 THR GLN ALA ASP TRP THR VAL VAL LEU ALA THR ASN GLN SEQRES 5 D 179 SER GLY LEU ALA ARG GLY LEU PHE ASP THR ALA THR LEU SEQRES 6 D 179 ASN ALA ILE HIS ASP LYS MSE HIS ARG ALA LEU ALA GLN SEQRES 7 D 179 MSE GLY GLY VAL VAL ASP ALA ILE PHE MSE CYS PRO HIS SEQRES 8 D 179 GLY PRO ASP ASP GLY CYS ALA CYS ARG LYS PRO LEU PRO SEQRES 9 D 179 GLY MSE TYR ARG ASP ILE ALA ARG ARG TYR ASP VAL ASP SEQRES 10 D 179 LEU ALA GLY VAL PRO ALA VAL GLY ASP SER LEU ARG ASP SEQRES 11 D 179 LEU GLN ALA ALA ALA GLN ALA GLY CYS ALA PRO TRP LEU SEQRES 12 D 179 VAL GLN THR GLY ASN GLY ARG LYS THR LEU ALA GLN GLY SEQRES 13 D 179 GLY LEU PRO GLU GLY THR ARG VAL CYS GLU ASP LEU ALA SEQRES 14 D 179 ALA VAL ALA GLU GLN LEU LEU GLN GLU ALA MODRES 3L8H MSE A 1 MET SELENOMETHIONINE MODRES 3L8H MSE A 72 MET SELENOMETHIONINE MODRES 3L8H MSE A 79 MET SELENOMETHIONINE MODRES 3L8H MSE A 88 MET SELENOMETHIONINE MODRES 3L8H MSE A 106 MET SELENOMETHIONINE MODRES 3L8H MSE B 1 MET SELENOMETHIONINE MODRES 3L8H MSE B 72 MET SELENOMETHIONINE MODRES 3L8H MSE B 79 MET SELENOMETHIONINE MODRES 3L8H MSE B 88 MET SELENOMETHIONINE MODRES 3L8H MSE B 106 MET SELENOMETHIONINE MODRES 3L8H MSE C 1 MET SELENOMETHIONINE MODRES 3L8H MSE C 72 MET SELENOMETHIONINE MODRES 3L8H MSE C 79 MET SELENOMETHIONINE MODRES 3L8H MSE C 88 MET SELENOMETHIONINE MODRES 3L8H MSE C 106 MET SELENOMETHIONINE MODRES 3L8H MSE D 1 MET SELENOMETHIONINE MODRES 3L8H MSE D 72 MET SELENOMETHIONINE MODRES 3L8H MSE D 79 MET SELENOMETHIONINE MODRES 3L8H MSE D 88 MET SELENOMETHIONINE MODRES 3L8H MSE D 106 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 72 8 HET MSE A 79 8 HET MSE A 88 8 HET MSE A 106 8 HET MSE B 1 8 HET MSE B 72 8 HET MSE B 79 8 HET MSE B 88 8 HET MSE B 106 8 HET MSE C 1 8 HET MSE C 72 8 HET MSE C 79 8 HET MSE C 88 8 HET MSE C 106 8 HET MSE D 1 8 HET MSE D 72 8 HET MSE D 79 8 HET MSE D 88 8 HET MSE D 106 8 HET MG A 801 1 HET ZN A 901 1 HET PO4 A2001 5 HET FMT A2007 3 HET MG A 180 1 HET MG B 802 1 HET ZN B 902 1 HET PO4 B2002 5 HET PO4 B2005 5 HET MG C 803 1 HET ZN C 903 1 HET PO4 C2003 5 HET FX1 C2006 12 HET MG D 804 1 HET ZN D 904 1 HET PO4 D2004 5 HET SAR D2008 6 HET FMT D2009 3 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM FMT FORMIC ACID HETNAM FX1 BETA-D-THREO-HEXO-2,4-DIULO-2,5-FURANOSE HETNAM SAR SARCOSINE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 MG 5(MG 2+) FORMUL 6 ZN 4(ZN 2+) FORMUL 7 PO4 5(O4 P 3-) FORMUL 8 FMT 2(C H2 O2) FORMUL 17 FX1 C6 H10 O6 FORMUL 21 SAR C3 H7 N O2 FORMUL 23 HOH *696(H2 O) HELIX 1 1 SER A 22 TRP A 26 5 5 HELIX 2 2 GLY A 31 ALA A 42 1 12 HELIX 3 3 ASP A 61 MSE A 79 1 19 HELIX 4 4 PRO A 104 ASP A 115 1 12 HELIX 5 5 SER A 127 GLY A 138 1 12 HELIX 6 6 ASN A 148 GLY A 156 1 9 HELIX 7 7 ASP A 167 GLU A 178 1 12 HELIX 8 8 SER B 22 TRP B 26 5 5 HELIX 9 9 GLY B 31 ALA B 42 1 12 HELIX 10 10 ASP B 61 GLN B 78 1 18 HELIX 11 11 PRO B 104 ASP B 115 1 12 HELIX 12 12 SER B 127 GLY B 138 1 12 HELIX 13 13 ASN B 148 GLY B 156 1 9 HELIX 14 14 ASP B 167 GLU B 178 1 12 HELIX 15 15 SER C 22 TRP C 26 5 5 HELIX 16 16 GLY C 31 ALA C 42 1 12 HELIX 17 17 ASP C 61 GLN C 78 1 18 HELIX 18 18 PRO C 104 ASP C 115 1 12 HELIX 19 19 SER C 127 GLY C 138 1 12 HELIX 20 20 ASN C 148 GLY C 156 1 9 HELIX 21 21 ASP C 167 GLU C 178 1 12 HELIX 22 22 SER D 22 TRP D 26 5 5 HELIX 23 23 GLY D 31 ALA D 42 1 12 HELIX 24 24 ASP D 61 GLN D 78 1 18 HELIX 25 25 PRO D 104 ASP D 115 1 12 HELIX 26 26 SER D 127 GLY D 138 1 12 HELIX 27 27 ASN D 148 GLY D 156 1 9 HELIX 28 28 ASP D 167 GLU D 178 1 12 SHEET 1 A12 ALA A 85 CYS A 89 0 SHEET 2 A12 THR A 45 ASN A 51 1 N LEU A 48 O PHE A 87 SHEET 3 A12 LEU A 3 LEU A 6 1 N LEU A 6 O VAL A 47 SHEET 4 A12 PRO A 122 GLY A 125 1 O VAL A 124 N ILE A 5 SHEET 5 A12 ALA A 140 VAL A 144 1 O TRP A 142 N ALA A 123 SHEET 6 A12 THR A 162 CYS A 165 1 O ARG A 163 N LEU A 143 SHEET 7 A12 THR C 162 CYS C 165 -1 O THR C 162 N VAL A 164 SHEET 8 A12 ALA C 140 VAL C 144 1 N LEU C 143 O ARG C 163 SHEET 9 A12 PRO C 122 GLY C 125 1 N GLY C 125 O TRP C 142 SHEET 10 A12 LYS C 2 LEU C 6 1 N ILE C 5 O VAL C 124 SHEET 11 A12 TRP C 44 ASN C 51 1 O VAL C 47 N LEU C 6 SHEET 12 A12 ALA C 85 CYS C 89 1 O PHE C 87 N LEU C 48 SHEET 1 B12 ALA B 85 CYS B 89 0 SHEET 2 B12 TRP B 44 ASN B 51 1 N LEU B 48 O PHE B 87 SHEET 3 B12 LYS B 2 LEU B 6 1 N LEU B 6 O VAL B 47 SHEET 4 B12 PRO B 122 GLY B 125 1 O VAL B 124 N ILE B 5 SHEET 5 B12 ALA B 140 VAL B 144 1 O TRP B 142 N GLY B 125 SHEET 6 B12 THR B 162 CYS B 165 1 O ARG B 163 N LEU B 143 SHEET 7 B12 THR D 162 CYS D 165 -1 O THR D 162 N VAL B 164 SHEET 8 B12 ALA D 140 VAL D 144 1 N LEU D 143 O ARG D 163 SHEET 9 B12 PRO D 122 GLY D 125 1 N ALA D 123 O TRP D 142 SHEET 10 B12 LYS D 2 LEU D 6 1 N ILE D 5 O VAL D 124 SHEET 11 B12 TRP D 44 ASN D 51 1 O THR D 45 N LYS D 2 SHEET 12 B12 ALA D 85 CYS D 89 1 O PHE D 87 N LEU D 48 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LYS A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N HIS A 73 1555 1555 1.33 LINK C GLN A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLY A 80 1555 1555 1.33 LINK C PHE A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N CYS A 89 1555 1555 1.32 LINK C GLY A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N TYR A 107 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C LYS B 71 N MSE B 72 1555 1555 1.33 LINK C MSE B 72 N HIS B 73 1555 1555 1.33 LINK C GLN B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N GLY B 80 1555 1555 1.33 LINK C PHE B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N CYS B 89 1555 1555 1.33 LINK C GLY B 105 N MSE B 106 1555 1555 1.34 LINK C MSE B 106 N TYR B 107 1555 1555 1.33 LINK C MSE C 1 N LYS C 2 1555 1555 1.33 LINK C LYS C 71 N MSE C 72 1555 1555 1.33 LINK C MSE C 72 N HIS C 73 1555 1555 1.33 LINK C GLN C 78 N MSE C 79 1555 1555 1.33 LINK C MSE C 79 N GLY C 80 1555 1555 1.32 LINK C PHE C 87 N MSE C 88 1555 1555 1.33 LINK C MSE C 88 N CYS C 89 1555 1555 1.33 LINK C GLY C 105 N MSE C 106 1555 1555 1.34 LINK C MSE C 106 N TYR C 107 1555 1555 1.33 LINK C MSE D 1 N LYS D 2 1555 1555 1.33 LINK C LYS D 71 N MSE D 72 1555 1555 1.33 LINK C MSE D 72 N HIS D 73 1555 1555 1.33 LINK C GLN D 78 N MSE D 79 1555 1555 1.33 LINK C MSE D 79 N GLY D 80 1555 1555 1.32 LINK C PHE D 87 N MSE D 88 1555 1555 1.33 LINK C MSE D 88 N CYS D 89 1555 1555 1.33 LINK C GLY D 105 N MSE D 106 1555 1555 1.33 LINK C MSE D 106 N TYR D 107 1555 1555 1.33 LINK OD2 ASP A 7 MG MG A 801 1555 1555 2.08 LINK O ASP A 9 MG MG A 801 1555 1555 2.15 LINK SG CYS A 89 ZN ZN A 901 1555 1555 2.35 LINK ND1 HIS A 91 ZN ZN A 901 1555 1555 2.08 LINK SG CYS A 97 ZN ZN A 901 1555 1555 2.28 LINK SG CYS A 99 ZN ZN A 901 1555 1555 2.29 LINK OD1 ASP A 126 MG MG A 801 1555 1555 2.21 LINK OD2 ASP A 167 MG MG A 180 1555 1555 2.22 LINK MG MG A 180 O HOH A 184 1555 1555 2.27 LINK MG MG A 180 O HOH A 200 1555 1555 2.54 LINK MG MG A 180 O HOH A 637 1555 1555 2.68 LINK O HOH A 181 MG MG A 801 1555 1555 2.17 LINK O HOH A 188 MG MG A 801 1555 1555 2.17 LINK MG MG A 801 O1 PO4 A2001 1555 1555 2.10 LINK OD2 ASP B 7 MG MG B 802 1555 1555 2.08 LINK O ASP B 9 MG MG B 802 1555 1555 2.14 LINK SG CYS B 89 ZN ZN B 902 1555 1555 2.24 LINK ND1 HIS B 91 ZN ZN B 902 1555 1555 2.05 LINK SG CYS B 97 ZN ZN B 902 1555 1555 2.35 LINK SG CYS B 99 ZN ZN B 902 1555 1555 2.34 LINK OD1 ASP B 126 MG MG B 802 1555 1555 2.16 LINK O HOH B 186 MG MG B 802 1555 1555 2.21 LINK O HOH B 194 MG MG B 802 1555 1555 2.17 LINK MG MG B 802 O3 PO4 B2002 1555 1555 2.08 LINK OD2 ASP C 7 MG MG C 803 1555 1555 2.06 LINK O ASP C 9 MG MG C 803 1555 1555 2.13 LINK SG CYS C 89 ZN ZN C 903 1555 1555 2.31 LINK ND1 HIS C 91 ZN ZN C 903 1555 1555 2.22 LINK SG CYS C 97 ZN ZN C 903 1555 1555 2.40 LINK SG CYS C 99 ZN ZN C 903 1555 1555 2.36 LINK OD1 ASP C 126 MG MG C 803 1555 1555 2.16 LINK O HOH C 180 MG MG C 803 1555 1555 2.20 LINK O HOH C 185 MG MG C 803 1555 1555 2.22 LINK MG MG C 803 O2 PO4 C2003 1555 1555 2.14 LINK OD2 ASP D 7 MG MG D 804 1555 1555 2.11 LINK O ASP D 9 MG MG D 804 1555 1555 2.13 LINK SG CYS D 89 ZN ZN D 904 1555 1555 2.33 LINK ND1 HIS D 91 ZN ZN D 904 1555 1555 2.22 LINK SG CYS D 97 ZN ZN D 904 1555 1555 2.28 LINK SG CYS D 99 ZN ZN D 904 1555 1555 2.40 LINK OD1 ASP D 126 MG MG D 804 1555 1555 2.22 LINK O HOH D 181 MG MG D 804 1555 1555 2.14 LINK O HOH D 200 MG MG D 804 1555 1555 2.25 LINK MG MG D 804 O4 PO4 D2004 1555 1555 2.22 CISPEP 1 LYS A 101 PRO A 102 0 13.75 CISPEP 2 LYS B 101 PRO B 102 0 15.05 CISPEP 3 LYS C 101 PRO C 102 0 14.97 CISPEP 4 LYS D 101 PRO D 102 0 11.63 CRYST1 38.072 58.389 85.724 90.48 97.54 92.02 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026266 0.000926 0.003489 0.00000 SCALE2 0.000000 0.017137 0.000225 0.00000 SCALE3 0.000000 0.000000 0.011768 0.00000 HETATM 1 N MSE A 1 4.269 13.340 -13.749 1.00 23.65 N HETATM 2 CA MSE A 1 4.390 12.765 -12.414 1.00 21.58 C HETATM 3 C MSE A 1 4.636 11.264 -12.519 1.00 19.26 C HETATM 4 O MSE A 1 4.421 10.665 -13.568 1.00 20.54 O HETATM 5 CB MSE A 1 3.133 13.056 -11.580 1.00 20.05 C HETATM 6 CG MSE A 1 2.026 12.022 -11.711 1.00 23.09 C HETATM 7 SE MSE A 1 0.522 12.372 -10.497 1.00 36.13 SE HETATM 8 CE MSE A 1 1.419 12.162 -8.831 1.00 16.96 C