HEADER PROTEIN BINDING 31-DEC-09 3L8I TITLE CRYSTAL STRUCTURE OF CCM3, A CEREBRAL CAVERNOUS MALFORMATION PROTEIN TITLE 2 CRITICAL FOR VASCULAR INTEGRITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH PROTEIN 10; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TF-1 CELL APOPTOSIS-RELATED PROTEIN 15, CEREBRAL CAVERNOUS COMPND 5 MALFORMATIONS 3 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD10, CCM3, TFAR15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET-32 KEYWDS CEREBRAL CAVERNOUS MALFORMATION, FAT DOMAIN, DIMERIZATION, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR X.LI,R.ZHANG,H.ZHANG,Y.HE,W.JI,W.MIN,T.J.BOGGON REVDAT 4 21-FEB-24 3L8I 1 SEQADV REVDAT 3 11-AUG-10 3L8I 1 JRNL REVDAT 2 02-JUN-10 3L8I 1 JRNL REVDAT 1 19-MAY-10 3L8I 0 JRNL AUTH X.LI,R.ZHANG,H.ZHANG,Y.HE,W.JI,W.MIN,T.J.BOGGON JRNL TITL CRYSTAL STRUCTURE OF CCM3, A CEREBRAL CAVERNOUS MALFORMATION JRNL TITL 2 PROTEIN CRITICAL FOR VASCULAR INTEGRITY. JRNL REF J.BIOL.CHEM. V. 285 24099 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20489202 JRNL DOI 10.1074/JBC.M110.128470 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 70 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.45000 REMARK 3 B22 (A**2) : 0.64000 REMARK 3 B33 (A**2) : 1.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.859 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.348 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.291 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.888 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6756 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9087 ; 1.106 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 810 ; 4.808 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 329 ;40.620 ;25.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1351 ;17.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;14.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1038 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4959 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4082 ; 0.417 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6640 ; 0.801 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2674 ; 1.206 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2447 ; 1.988 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1484 5.0750 -36.9522 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.1783 REMARK 3 T33: 0.1713 T12: 0.0198 REMARK 3 T13: -0.0219 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 6.7908 L22: 5.2655 REMARK 3 L33: 7.6218 L12: -0.2169 REMARK 3 L13: -0.9023 L23: 0.1358 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.3504 S13: -0.4168 REMARK 3 S21: -0.0104 S22: -0.0619 S23: -0.1130 REMARK 3 S31: 0.0766 S32: 0.4847 S33: 0.0975 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 69 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9508 0.7727 -38.1812 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.1792 REMARK 3 T33: 0.3740 T12: 0.0624 REMARK 3 T13: 0.0309 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 7.4527 L22: 3.0884 REMARK 3 L33: 7.4281 L12: 2.2548 REMARK 3 L13: -1.8144 L23: -1.4461 REMARK 3 S TENSOR REMARK 3 S11: -0.2637 S12: 0.5965 S13: -1.0302 REMARK 3 S21: -0.2002 S22: 0.0873 S23: -0.2706 REMARK 3 S31: 0.6032 S32: 0.1536 S33: 0.1764 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -1 C 69 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8039 6.9987 -26.9167 REMARK 3 T TENSOR REMARK 3 T11: 0.1443 T22: 0.2004 REMARK 3 T33: 0.2028 T12: -0.0377 REMARK 3 T13: -0.0951 T23: 0.0640 REMARK 3 L TENSOR REMARK 3 L11: 7.2661 L22: 5.2180 REMARK 3 L33: 1.0698 L12: 0.6886 REMARK 3 L13: -0.9867 L23: -1.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.1101 S12: -0.4641 S13: -0.5851 REMARK 3 S21: 0.4069 S22: -0.1213 S23: -0.1700 REMARK 3 S31: 0.0971 S32: 0.0088 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 8 D 69 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9210 3.6926 -25.9071 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.1553 REMARK 3 T33: 0.2172 T12: -0.0211 REMARK 3 T13: -0.0244 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 7.8432 L22: 4.6156 REMARK 3 L33: 9.4670 L12: -1.5029 REMARK 3 L13: 0.9179 L23: 1.2526 REMARK 3 S TENSOR REMARK 3 S11: -0.0927 S12: -0.6755 S13: -0.5196 REMARK 3 S21: 0.2292 S22: 0.0559 S23: 0.1002 REMARK 3 S31: 0.2150 S32: -0.5767 S33: 0.0368 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 300 D 369 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9080 9.1716 -32.1548 REMARK 3 T TENSOR REMARK 3 T11: 0.4940 T22: 0.4645 REMARK 3 T33: 0.5394 T12: 0.0290 REMARK 3 T13: -0.0187 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.2845 L22: 0.3360 REMARK 3 L33: 0.4022 L12: -0.0448 REMARK 3 L13: -0.2984 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.0177 S13: -0.0824 REMARK 3 S21: 0.0054 S22: 0.0454 S23: -0.0857 REMARK 3 S31: 0.1755 S32: 0.0716 S33: 0.0272 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): -29.4174 5.7586 -10.0846 REMARK 3 T TENSOR REMARK 3 T11: 0.2183 T22: 0.3541 REMARK 3 T33: 0.1859 T12: -0.0756 REMARK 3 T13: -0.1262 T23: -0.0753 REMARK 3 L TENSOR REMARK 3 L11: 2.7375 L22: 3.5088 REMARK 3 L33: 11.6800 L12: -2.7208 REMARK 3 L13: 1.4044 L23: -4.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.1746 S12: -0.5777 S13: 0.0943 REMARK 3 S21: 0.2780 S22: 0.2334 S23: -0.0322 REMARK 3 S31: -0.1657 S32: 0.3936 S33: -0.0588 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 70 B 210 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9468 29.6184 -52.2938 REMARK 3 T TENSOR REMARK 3 T11: 0.4121 T22: 0.2403 REMARK 3 T33: 0.3186 T12: 0.0567 REMARK 3 T13: -0.0763 T23: 0.1773 REMARK 3 L TENSOR REMARK 3 L11: 5.1968 L22: 6.6401 REMARK 3 L33: 9.0788 L12: 0.2388 REMARK 3 L13: 1.8687 L23: -4.4955 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: 0.8381 S13: 0.4253 REMARK 3 S21: -0.9358 S22: 0.2766 S23: 0.5169 REMARK 3 S31: -0.1192 S32: -0.4233 S33: -0.1947 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 70 C 210 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9917 -5.8458 -53.4451 REMARK 3 T TENSOR REMARK 3 T11: 0.2612 T22: 0.3012 REMARK 3 T33: 0.1485 T12: -0.1456 REMARK 3 T13: -0.0078 T23: -0.0860 REMARK 3 L TENSOR REMARK 3 L11: 5.4151 L22: 7.1494 REMARK 3 L33: 10.6711 L12: 1.9379 REMARK 3 L13: -0.4950 L23: 2.5617 REMARK 3 S TENSOR REMARK 3 S11: -0.2888 S12: 0.8912 S13: -0.6630 REMARK 3 S21: -0.2062 S22: 0.4334 S23: -0.1916 REMARK 3 S31: 1.4994 S32: -0.5809 S33: -0.1446 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 70 D 210 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0496 33.8455 -24.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.5212 T22: 0.1316 REMARK 3 T33: 0.3176 T12: -0.1242 REMARK 3 T13: 0.1819 T23: -0.0943 REMARK 3 L TENSOR REMARK 3 L11: 3.4892 L22: 7.4341 REMARK 3 L33: 9.5184 L12: -0.1648 REMARK 3 L13: 0.5936 L23: 1.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.2454 S12: -0.4958 S13: 0.3721 REMARK 3 S21: 1.0057 S22: 0.3243 S23: 0.0584 REMARK 3 S31: -1.1210 S32: 0.5364 S33: -0.5697 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L8I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9551 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06100 REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.66100 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M POTASSIUM FLUORIDE, 13% PEG 3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.54150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.51900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.00400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.51900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.54150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.00400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -63.08300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 MET A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 GLU A 6 REMARK 465 GLU A 7 REMARK 465 MET A 8 REMARK 465 LYS A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 THR A 14 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 MET B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 GLU B 6 REMARK 465 GLU B 7 REMARK 465 MET B 8 REMARK 465 LYS B 9 REMARK 465 VAL B 211 REMARK 465 ALA B 212 REMARK 465 VAL C 211 REMARK 465 ALA C 212 REMARK 465 GLY D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ARG D 2 REMARK 465 MET D 3 REMARK 465 THR D 4 REMARK 465 MET D 5 REMARK 465 GLU D 6 REMARK 465 GLU D 7 REMARK 465 VAL D 211 REMARK 465 ALA D 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 90 -88.52 -74.93 REMARK 500 MET A 92 123.21 179.32 REMARK 500 TYR B 91 20.21 81.37 REMARK 500 GLU B 94 42.46 -83.78 REMARK 500 PRO B 96 74.84 -104.84 REMARK 500 GLN B 153 23.77 -148.41 REMARK 500 GLN B 155 -86.23 -136.12 REMARK 500 ARG B 158 26.31 -69.35 REMARK 500 ALA B 159 -42.28 -145.06 REMARK 500 ASP C 87 82.94 46.24 REMARK 500 PRO C 96 38.04 -89.57 REMARK 500 PHE C 149 -73.09 -55.50 REMARK 500 TYR C 152 -116.13 -79.82 REMARK 500 GLN C 153 -74.19 -78.55 REMARK 500 TYR C 154 69.91 61.50 REMARK 500 GLN C 155 -130.65 -85.55 REMARK 500 LYS C 186 95.91 -67.85 REMARK 500 LYS C 209 -76.45 -64.72 REMARK 500 TYR D 152 -47.41 -136.16 REMARK 500 GLN D 153 85.79 55.00 REMARK 500 ARG D 157 -132.89 -80.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L8J RELATED DB: PDB DBREF 3L8I A 1 212 UNP Q9BUL8 PDC10_HUMAN 1 212 DBREF 3L8I B 1 212 UNP Q9BUL8 PDC10_HUMAN 1 212 DBREF 3L8I C 1 212 UNP Q9BUL8 PDC10_HUMAN 1 212 DBREF 3L8I D 1 212 UNP Q9BUL8 PDC10_HUMAN 1 212 SEQADV 3L8I GLY A -1 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I HIS A 0 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I GLY B -1 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I HIS B 0 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I GLY C -1 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I HIS C 0 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I GLY D -1 UNP Q9BUL8 EXPRESSION TAG SEQADV 3L8I HIS D 0 UNP Q9BUL8 EXPRESSION TAG SEQRES 1 A 214 GLY HIS MET ARG MET THR MET GLU GLU MET LYS ASN GLU SEQRES 2 A 214 ALA GLU THR THR SER MET VAL SER MET PRO LEU TYR ALA SEQRES 3 A 214 VAL MET TYR PRO VAL PHE ASN GLU LEU GLU ARG VAL ASN SEQRES 4 A 214 LEU SER ALA ALA GLN THR LEU ARG ALA ALA PHE ILE LYS SEQRES 5 A 214 ALA GLU LYS GLU ASN PRO GLY LEU THR GLN ASP ILE ILE SEQRES 6 A 214 MET LYS ILE LEU GLU LYS LYS SER VAL GLU VAL ASN PHE SEQRES 7 A 214 THR GLU SER LEU LEU ARG MET ALA ALA ASP ASP VAL GLU SEQRES 8 A 214 GLU TYR MET ILE GLU ARG PRO GLU PRO GLU PHE GLN ASP SEQRES 9 A 214 LEU ASN GLU LYS ALA ARG ALA LEU LYS GLN ILE LEU SER SEQRES 10 A 214 LYS ILE PRO ASP GLU ILE ASN ASP ARG VAL ARG PHE LEU SEQRES 11 A 214 GLN THR ILE LYS ASP ILE ALA SER ALA ILE LYS GLU LEU SEQRES 12 A 214 LEU ASP THR VAL ASN ASN VAL PHE LYS LYS TYR GLN TYR SEQRES 13 A 214 GLN ASN ARG ARG ALA LEU GLU HIS GLN LYS LYS GLU PHE SEQRES 14 A 214 VAL LYS TYR SER LYS SER PHE SER ASP THR LEU LYS THR SEQRES 15 A 214 TYR PHE LYS ASP GLY LYS ALA ILE ASN VAL PHE VAL SER SEQRES 16 A 214 ALA ASN ARG LEU ILE HIS GLN THR ASN LEU ILE LEU GLN SEQRES 17 A 214 THR PHE LYS THR VAL ALA SEQRES 1 B 214 GLY HIS MET ARG MET THR MET GLU GLU MET LYS ASN GLU SEQRES 2 B 214 ALA GLU THR THR SER MET VAL SER MET PRO LEU TYR ALA SEQRES 3 B 214 VAL MET TYR PRO VAL PHE ASN GLU LEU GLU ARG VAL ASN SEQRES 4 B 214 LEU SER ALA ALA GLN THR LEU ARG ALA ALA PHE ILE LYS SEQRES 5 B 214 ALA GLU LYS GLU ASN PRO GLY LEU THR GLN ASP ILE ILE SEQRES 6 B 214 MET LYS ILE LEU GLU LYS LYS SER VAL GLU VAL ASN PHE SEQRES 7 B 214 THR GLU SER LEU LEU ARG MET ALA ALA ASP ASP VAL GLU SEQRES 8 B 214 GLU TYR MET ILE GLU ARG PRO GLU PRO GLU PHE GLN ASP SEQRES 9 B 214 LEU ASN GLU LYS ALA ARG ALA LEU LYS GLN ILE LEU SER SEQRES 10 B 214 LYS ILE PRO ASP GLU ILE ASN ASP ARG VAL ARG PHE LEU SEQRES 11 B 214 GLN THR ILE LYS ASP ILE ALA SER ALA ILE LYS GLU LEU SEQRES 12 B 214 LEU ASP THR VAL ASN ASN VAL PHE LYS LYS TYR GLN TYR SEQRES 13 B 214 GLN ASN ARG ARG ALA LEU GLU HIS GLN LYS LYS GLU PHE SEQRES 14 B 214 VAL LYS TYR SER LYS SER PHE SER ASP THR LEU LYS THR SEQRES 15 B 214 TYR PHE LYS ASP GLY LYS ALA ILE ASN VAL PHE VAL SER SEQRES 16 B 214 ALA ASN ARG LEU ILE HIS GLN THR ASN LEU ILE LEU GLN SEQRES 17 B 214 THR PHE LYS THR VAL ALA SEQRES 1 C 214 GLY HIS MET ARG MET THR MET GLU GLU MET LYS ASN GLU SEQRES 2 C 214 ALA GLU THR THR SER MET VAL SER MET PRO LEU TYR ALA SEQRES 3 C 214 VAL MET TYR PRO VAL PHE ASN GLU LEU GLU ARG VAL ASN SEQRES 4 C 214 LEU SER ALA ALA GLN THR LEU ARG ALA ALA PHE ILE LYS SEQRES 5 C 214 ALA GLU LYS GLU ASN PRO GLY LEU THR GLN ASP ILE ILE SEQRES 6 C 214 MET LYS ILE LEU GLU LYS LYS SER VAL GLU VAL ASN PHE SEQRES 7 C 214 THR GLU SER LEU LEU ARG MET ALA ALA ASP ASP VAL GLU SEQRES 8 C 214 GLU TYR MET ILE GLU ARG PRO GLU PRO GLU PHE GLN ASP SEQRES 9 C 214 LEU ASN GLU LYS ALA ARG ALA LEU LYS GLN ILE LEU SER SEQRES 10 C 214 LYS ILE PRO ASP GLU ILE ASN ASP ARG VAL ARG PHE LEU SEQRES 11 C 214 GLN THR ILE LYS ASP ILE ALA SER ALA ILE LYS GLU LEU SEQRES 12 C 214 LEU ASP THR VAL ASN ASN VAL PHE LYS LYS TYR GLN TYR SEQRES 13 C 214 GLN ASN ARG ARG ALA LEU GLU HIS GLN LYS LYS GLU PHE SEQRES 14 C 214 VAL LYS TYR SER LYS SER PHE SER ASP THR LEU LYS THR SEQRES 15 C 214 TYR PHE LYS ASP GLY LYS ALA ILE ASN VAL PHE VAL SER SEQRES 16 C 214 ALA ASN ARG LEU ILE HIS GLN THR ASN LEU ILE LEU GLN SEQRES 17 C 214 THR PHE LYS THR VAL ALA SEQRES 1 D 214 GLY HIS MET ARG MET THR MET GLU GLU MET LYS ASN GLU SEQRES 2 D 214 ALA GLU THR THR SER MET VAL SER MET PRO LEU TYR ALA SEQRES 3 D 214 VAL MET TYR PRO VAL PHE ASN GLU LEU GLU ARG VAL ASN SEQRES 4 D 214 LEU SER ALA ALA GLN THR LEU ARG ALA ALA PHE ILE LYS SEQRES 5 D 214 ALA GLU LYS GLU ASN PRO GLY LEU THR GLN ASP ILE ILE SEQRES 6 D 214 MET LYS ILE LEU GLU LYS LYS SER VAL GLU VAL ASN PHE SEQRES 7 D 214 THR GLU SER LEU LEU ARG MET ALA ALA ASP ASP VAL GLU SEQRES 8 D 214 GLU TYR MET ILE GLU ARG PRO GLU PRO GLU PHE GLN ASP SEQRES 9 D 214 LEU ASN GLU LYS ALA ARG ALA LEU LYS GLN ILE LEU SER SEQRES 10 D 214 LYS ILE PRO ASP GLU ILE ASN ASP ARG VAL ARG PHE LEU SEQRES 11 D 214 GLN THR ILE LYS ASP ILE ALA SER ALA ILE LYS GLU LEU SEQRES 12 D 214 LEU ASP THR VAL ASN ASN VAL PHE LYS LYS TYR GLN TYR SEQRES 13 D 214 GLN ASN ARG ARG ALA LEU GLU HIS GLN LYS LYS GLU PHE SEQRES 14 D 214 VAL LYS TYR SER LYS SER PHE SER ASP THR LEU LYS THR SEQRES 15 D 214 TYR PHE LYS ASP GLY LYS ALA ILE ASN VAL PHE VAL SER SEQRES 16 D 214 ALA ASN ARG LEU ILE HIS GLN THR ASN LEU ILE LEU GLN SEQRES 17 D 214 THR PHE LYS THR VAL ALA FORMUL 5 HOH *70(H2 O) HELIX 1 1 SER A 19 VAL A 25 1 7 HELIX 2 2 VAL A 25 GLU A 32 1 8 HELIX 3 3 LEU A 33 ASN A 55 1 23 HELIX 4 4 GLY A 57 GLU A 68 1 12 HELIX 5 5 LYS A 69 ALA A 84 1 16 HELIX 6 6 GLU A 97 LYS A 116 1 20 HELIX 7 7 ILE A 117 GLU A 120 5 4 HELIX 8 8 ASP A 123 PHE A 149 1 27 HELIX 9 9 LYS A 150 TYR A 152 5 3 HELIX 10 10 ARG A 157 GLY A 185 1 29 HELIX 11 11 ALA A 187 ALA A 212 1 26 HELIX 12 12 ASN B 10 THR B 15 1 6 HELIX 13 13 SER B 16 VAL B 18 5 3 HELIX 14 14 SER B 19 VAL B 25 1 7 HELIX 15 15 VAL B 25 ARG B 35 1 11 HELIX 16 16 ASN B 37 ASN B 55 1 19 HELIX 17 17 GLY B 57 LYS B 69 1 13 HELIX 18 18 LYS B 69 ALA B 84 1 16 HELIX 19 19 ALA B 85 VAL B 88 5 4 HELIX 20 20 GLU B 97 SER B 115 1 19 HELIX 21 21 LYS B 116 ILE B 121 1 6 HELIX 22 22 ASP B 123 TYR B 152 1 30 HELIX 23 23 ALA B 159 GLY B 185 1 27 HELIX 24 24 LYS B 186 PHE B 208 1 23 HELIX 25 25 THR C 4 THR C 14 1 11 HELIX 26 26 SER C 16 VAL C 18 5 3 HELIX 27 27 SER C 19 VAL C 25 1 7 HELIX 28 28 VAL C 25 ASN C 37 1 13 HELIX 29 29 ASN C 37 ASN C 55 1 19 HELIX 30 30 GLY C 57 LYS C 69 1 13 HELIX 31 31 LYS C 69 ALA C 84 1 16 HELIX 32 32 GLU C 97 LYS C 116 1 20 HELIX 33 33 ILE C 117 GLU C 120 5 4 HELIX 34 34 ASP C 123 LYS C 150 1 28 HELIX 35 35 ARG C 158 GLY C 185 1 28 HELIX 36 36 ALA C 187 THR C 210 1 24 HELIX 37 37 MET D 8 THR D 14 1 7 HELIX 38 38 SER D 16 VAL D 18 5 3 HELIX 39 39 SER D 19 VAL D 25 1 7 HELIX 40 40 VAL D 25 ASN D 37 1 13 HELIX 41 41 ASN D 37 ASN D 55 1 19 HELIX 42 42 GLY D 57 LYS D 69 1 13 HELIX 43 43 LYS D 69 ALA D 84 1 16 HELIX 44 44 ALA D 85 GLU D 89 5 5 HELIX 45 45 GLU D 97 SER D 115 1 19 HELIX 46 46 LYS D 116 ILE D 121 1 6 HELIX 47 47 ASP D 123 LYS D 151 1 29 HELIX 48 48 ARG D 158 GLY D 185 1 28 HELIX 49 49 LYS D 186 PHE D 208 1 23 CRYST1 63.083 116.008 123.038 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015852 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008620 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008128 0.00000