HEADER OXIDOREDUCTASE 31-DEC-09 3L8K TITLE CRYSTAL STRUCTURE OF A DIHYDROLIPOYL DEHYDROGENASE FROM SULFOLOBUS TITLE 2 SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 GENE: PDHD-3, SSO1565; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS REDOX-ACTIVE CENTER, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.RUTTER,K.T.BAIN,S.MILLER,P.SAMPATHKUMAR,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3L8K 1 REMARK REVDAT 4 10-FEB-21 3L8K 1 AUTHOR JRNL REMARK REVDAT 3 21-NOV-18 3L8K 1 AUTHOR REVDAT 2 01-NOV-17 3L8K 1 REMARK REVDAT 1 09-FEB-10 3L8K 0 JRNL AUTH J.B.BONANNO,M.RUTTER,K.T.BAIN,S.MILLER,P.SAMPATHKUMAR, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A DIHYDROLIPOYL DEHYDROGENASE FROM JRNL TITL 2 SULFOLOBUS SOLFATARICUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2126 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 53 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.388 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.261 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7189 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4715 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9779 ; 1.624 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11573 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 924 ; 6.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;36.372 ;24.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1211 ;17.641 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;19.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1141 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7960 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1409 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4545 ; 0.869 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1869 ; 0.156 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7319 ; 1.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2644 ; 2.671 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2453 ; 4.497 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L8K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41969 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.027 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : 0.12100 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : 0.66900 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 6.3, 22% PEG 6K, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.09300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.99650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.36850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.99650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.09300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.36850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.09300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.36850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.99650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.36850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.09300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.99650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL ASSEMBLY IS PROBABLE REMARK 300 TETRAMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 66800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -136.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 114.18600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 63.36850 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 MET B -1 REMARK 465 ASN B 67 REMARK 465 VAL B 68 REMARK 465 LYS B 69 REMARK 465 GLY B 458 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 465 HIS B 464 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 VAL A 68 CG1 CG2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 ILE A 70 CG1 CG2 CD1 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 146 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 SER B 0 OG REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 ILE B 70 CG1 CG2 CD1 REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 LEU B 145 CG CD1 CD2 REMARK 470 ARG B 146 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 ASP B 240 CG OD1 OD2 REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 GLU B 242 CG CD OE1 OE2 REMARK 470 SER B 248 OG REMARK 470 LYS B 250 CG CD CE NZ REMARK 470 ASP B 251 CG OD1 OD2 REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 ARG B 269 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 278 CG CD OE1 OE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 432 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 54 OH TYR B 386 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 67 48.59 30.12 REMARK 500 GLU A 123 73.24 -115.66 REMARK 500 PHE A 166 91.50 -69.41 REMARK 500 LEU A 206 70.01 44.15 REMARK 500 GLU A 234 146.05 -173.87 REMARK 500 ALA A 265 57.59 -117.09 REMARK 500 SER A 284 -167.33 -114.94 REMARK 500 ALA A 311 83.68 -159.93 REMARK 500 TYR A 348 43.75 -95.05 REMARK 500 GLN A 388 79.16 -119.54 REMARK 500 LYS B 25 15.43 80.18 REMARK 500 SER B 44 8.11 -150.97 REMARK 500 SER B 261 138.75 -170.89 REMARK 500 ALA B 311 72.59 -166.65 REMARK 500 ALA B 330 21.08 -75.29 REMARK 500 TYR B 348 42.53 -89.88 REMARK 500 GLN B 388 77.10 -119.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 466 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 465 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 466 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11145H RELATED DB: TARGETDB DBREF 3L8K A 2 456 UNP Q97XZ3 Q97XZ3_SULSO 2 456 DBREF 3L8K B 2 456 UNP Q97XZ3 Q97XZ3_SULSO 2 456 SEQADV 3L8K MET A -1 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K SER A 0 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K LEU A 1 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K GLU A 457 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K GLY A 458 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 459 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 460 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 461 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 462 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 463 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS A 464 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K MET B -1 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K SER B 0 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K LEU B 1 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K GLU B 457 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K GLY B 458 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 459 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 460 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 461 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 462 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 463 UNP Q97XZ3 EXPRESSION TAG SEQADV 3L8K HIS B 464 UNP Q97XZ3 EXPRESSION TAG SEQRES 1 A 466 MET SER LEU LYS TYR ASP VAL VAL VAL ILE GLY ALA GLY SEQRES 2 A 466 GLY ALA GLY TYR HIS GLY ALA PHE ARG LEU ALA LYS ALA SEQRES 3 A 466 LYS TYR ASN VAL LEU MET ALA ASP PRO LYS GLY GLU LEU SEQRES 4 A 466 GLY GLY ASN CYS LEU TYR SER GLY CYS VAL PRO SER LYS SEQRES 5 A 466 THR VAL ARG GLU VAL ILE GLN THR ALA TRP ARG LEU THR SEQRES 6 A 466 ASN ILE ALA ASN VAL LYS ILE PRO LEU ASP PHE SER THR SEQRES 7 A 466 VAL GLN ASP ARG LYS ASP TYR VAL GLN GLU LEU ARG PHE SEQRES 8 A 466 LYS GLN HIS LYS ARG ASN MET SER GLN TYR GLU THR LEU SEQRES 9 A 466 THR PHE TYR LYS GLY TYR VAL LYS ILE LYS ASP PRO THR SEQRES 10 A 466 HIS VAL ILE VAL LYS THR ASP GLU GLY LYS GLU ILE GLU SEQRES 11 A 466 ALA GLU THR ARG TYR MET ILE ILE ALA SER GLY ALA GLU SEQRES 12 A 466 THR ALA LYS LEU ARG LEU PRO GLY VAL GLU TYR CYS LEU SEQRES 13 A 466 THR SER ASP ASP ILE PHE GLY TYR LYS THR SER PHE ARG SEQRES 14 A 466 LYS LEU PRO GLN ASP MET VAL ILE ILE GLY ALA GLY TYR SEQRES 15 A 466 ILE GLY LEU GLU ILE ALA SER ILE PHE ARG LEU MET GLY SEQRES 16 A 466 VAL GLN THR HIS ILE ILE GLU MET LEU ASP ARG ALA LEU SEQRES 17 A 466 ILE THR LEU GLU ASP GLN ASP ILE VAL ASN THR LEU LEU SEQRES 18 A 466 SER ILE LEU LYS LEU ASN ILE LYS PHE ASN SER PRO VAL SEQRES 19 A 466 THR GLU VAL LYS LYS ILE LYS ASP ASP GLU TYR GLU VAL SEQRES 20 A 466 ILE TYR SER THR LYS ASP GLY SER LYS LYS SER ILE PHE SEQRES 21 A 466 THR ASN SER VAL VAL LEU ALA ALA GLY ARG ARG PRO VAL SEQRES 22 A 466 ILE PRO GLU GLY ALA ARG GLU ILE GLY LEU SER ILE SER SEQRES 23 A 466 LYS THR GLY ILE VAL VAL ASP GLU THR MET LYS THR ASN SEQRES 24 A 466 ILE PRO ASN VAL PHE ALA THR GLY ASP ALA ASN GLY LEU SEQRES 25 A 466 ALA PRO TYR TYR HIS ALA ALA VAL ARG MET SER ILE ALA SEQRES 26 A 466 ALA ALA ASN ASN ILE MET ALA ASN GLY MET PRO VAL ASP SEQRES 27 A 466 TYR VAL ASP VAL LYS SER ILE PRO VAL THR ILE TYR THR SEQRES 28 A 466 ILE PRO SER LEU SER TYR VAL GLY ILE LEU PRO SER LYS SEQRES 29 A 466 ALA ARG LYS MET GLY ILE GLU ILE VAL GLU ALA GLU TYR SEQRES 30 A 466 ASN MET GLU GLU ASP VAL SER ALA GLN ILE TYR GLY GLN SEQRES 31 A 466 LYS GLU GLY VAL LEU LYS LEU ILE PHE GLU ARG GLY SER SEQRES 32 A 466 MET ARG LEU ILE GLY ALA TRP MET ILE GLY VAL HIS SER SEQRES 33 A 466 GLN TYR LEU ILE ASN GLU LEU GLY LEU ALA VAL ALA TYR SEQRES 34 A 466 GLY LEU ASN ALA LYS GLN LEU ALA SER PHE ALA GLU GLN SEQRES 35 A 466 HIS PRO SER THR ASN GLU ILE ILE SER TYR THR ALA ARG SEQRES 36 A 466 LYS VAL ILE GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 466 MET SER LEU LYS TYR ASP VAL VAL VAL ILE GLY ALA GLY SEQRES 2 B 466 GLY ALA GLY TYR HIS GLY ALA PHE ARG LEU ALA LYS ALA SEQRES 3 B 466 LYS TYR ASN VAL LEU MET ALA ASP PRO LYS GLY GLU LEU SEQRES 4 B 466 GLY GLY ASN CYS LEU TYR SER GLY CYS VAL PRO SER LYS SEQRES 5 B 466 THR VAL ARG GLU VAL ILE GLN THR ALA TRP ARG LEU THR SEQRES 6 B 466 ASN ILE ALA ASN VAL LYS ILE PRO LEU ASP PHE SER THR SEQRES 7 B 466 VAL GLN ASP ARG LYS ASP TYR VAL GLN GLU LEU ARG PHE SEQRES 8 B 466 LYS GLN HIS LYS ARG ASN MET SER GLN TYR GLU THR LEU SEQRES 9 B 466 THR PHE TYR LYS GLY TYR VAL LYS ILE LYS ASP PRO THR SEQRES 10 B 466 HIS VAL ILE VAL LYS THR ASP GLU GLY LYS GLU ILE GLU SEQRES 11 B 466 ALA GLU THR ARG TYR MET ILE ILE ALA SER GLY ALA GLU SEQRES 12 B 466 THR ALA LYS LEU ARG LEU PRO GLY VAL GLU TYR CYS LEU SEQRES 13 B 466 THR SER ASP ASP ILE PHE GLY TYR LYS THR SER PHE ARG SEQRES 14 B 466 LYS LEU PRO GLN ASP MET VAL ILE ILE GLY ALA GLY TYR SEQRES 15 B 466 ILE GLY LEU GLU ILE ALA SER ILE PHE ARG LEU MET GLY SEQRES 16 B 466 VAL GLN THR HIS ILE ILE GLU MET LEU ASP ARG ALA LEU SEQRES 17 B 466 ILE THR LEU GLU ASP GLN ASP ILE VAL ASN THR LEU LEU SEQRES 18 B 466 SER ILE LEU LYS LEU ASN ILE LYS PHE ASN SER PRO VAL SEQRES 19 B 466 THR GLU VAL LYS LYS ILE LYS ASP ASP GLU TYR GLU VAL SEQRES 20 B 466 ILE TYR SER THR LYS ASP GLY SER LYS LYS SER ILE PHE SEQRES 21 B 466 THR ASN SER VAL VAL LEU ALA ALA GLY ARG ARG PRO VAL SEQRES 22 B 466 ILE PRO GLU GLY ALA ARG GLU ILE GLY LEU SER ILE SER SEQRES 23 B 466 LYS THR GLY ILE VAL VAL ASP GLU THR MET LYS THR ASN SEQRES 24 B 466 ILE PRO ASN VAL PHE ALA THR GLY ASP ALA ASN GLY LEU SEQRES 25 B 466 ALA PRO TYR TYR HIS ALA ALA VAL ARG MET SER ILE ALA SEQRES 26 B 466 ALA ALA ASN ASN ILE MET ALA ASN GLY MET PRO VAL ASP SEQRES 27 B 466 TYR VAL ASP VAL LYS SER ILE PRO VAL THR ILE TYR THR SEQRES 28 B 466 ILE PRO SER LEU SER TYR VAL GLY ILE LEU PRO SER LYS SEQRES 29 B 466 ALA ARG LYS MET GLY ILE GLU ILE VAL GLU ALA GLU TYR SEQRES 30 B 466 ASN MET GLU GLU ASP VAL SER ALA GLN ILE TYR GLY GLN SEQRES 31 B 466 LYS GLU GLY VAL LEU LYS LEU ILE PHE GLU ARG GLY SER SEQRES 32 B 466 MET ARG LEU ILE GLY ALA TRP MET ILE GLY VAL HIS SER SEQRES 33 B 466 GLN TYR LEU ILE ASN GLU LEU GLY LEU ALA VAL ALA TYR SEQRES 34 B 466 GLY LEU ASN ALA LYS GLN LEU ALA SER PHE ALA GLU GLN SEQRES 35 B 466 HIS PRO SER THR ASN GLU ILE ILE SER TYR THR ALA ARG SEQRES 36 B 466 LYS VAL ILE GLU GLY HIS HIS HIS HIS HIS HIS HET ADP A 465 27 HET PO4 A 466 5 HET ADP B 465 27 HET PO4 B 466 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 PO4 2(O4 P 3-) FORMUL 7 HOH *53(H2 O) HELIX 1 1 GLY A 11 ALA A 24 1 14 HELIX 2 2 GLY A 38 GLY A 45 1 8 HELIX 3 3 GLY A 45 ASN A 67 1 23 HELIX 4 4 ASP A 73 SER A 97 1 25 HELIX 5 5 GLY A 149 CYS A 153 5 5 HELIX 6 6 THR A 155 GLY A 161 1 7 HELIX 7 7 GLY A 179 MET A 192 1 14 HELIX 8 8 ASP A 211 LYS A 223 1 13 HELIX 9 9 ALA A 276 GLY A 280 5 5 HELIX 10 10 GLY A 305 ASN A 308 5 4 HELIX 11 11 TYR A 313 ALA A 330 1 18 HELIX 12 12 LEU A 359 GLY A 367 1 9 HELIX 13 13 ASP A 380 GLY A 387 1 8 HELIX 14 14 HIS A 413 TYR A 427 1 15 HELIX 15 15 ASN A 430 PHE A 437 1 8 HELIX 16 16 ASN A 445 GLU A 457 1 13 HELIX 17 17 GLY B 11 ALA B 24 1 14 HELIX 18 18 GLY B 38 GLY B 45 1 8 HELIX 19 19 GLY B 45 ALA B 66 1 22 HELIX 20 20 ASP B 73 SER B 97 1 25 HELIX 21 21 GLY B 149 CYS B 153 5 5 HELIX 22 22 THR B 155 GLY B 161 1 7 HELIX 23 23 GLY B 179 MET B 192 1 14 HELIX 24 24 ASP B 211 LYS B 223 1 13 HELIX 25 25 GLY B 305 ASN B 308 5 4 HELIX 26 26 TYR B 313 ALA B 330 1 18 HELIX 27 27 ASP B 339 ILE B 343 5 5 HELIX 28 28 LEU B 359 GLY B 367 1 9 HELIX 29 29 ASP B 380 GLY B 387 1 8 HELIX 30 30 HIS B 413 GLY B 428 1 16 HELIX 31 31 ASN B 430 PHE B 437 1 8 HELIX 32 32 ASN B 445 GLU B 457 1 13 SHEET 1 A 6 LEU A 102 TYR A 105 0 SHEET 2 A 6 VAL A 28 ALA A 31 1 N VAL A 28 O THR A 103 SHEET 3 A 6 LEU A 1 ILE A 8 1 N VAL A 7 O LEU A 29 SHEET 4 A 6 GLU A 126 ILE A 136 1 O GLU A 130 N LEU A 1 SHEET 5 A 6 HIS A 116 THR A 121 -1 N VAL A 119 O ILE A 127 SHEET 6 A 6 GLY A 107 ASP A 113 -1 N LYS A 112 O HIS A 116 SHEET 1 B 5 LEU A 102 TYR A 105 0 SHEET 2 B 5 VAL A 28 ALA A 31 1 N VAL A 28 O THR A 103 SHEET 3 B 5 LEU A 1 ILE A 8 1 N VAL A 7 O LEU A 29 SHEET 4 B 5 GLU A 126 ILE A 136 1 O GLU A 130 N LEU A 1 SHEET 5 B 5 VAL A 301 ALA A 303 1 O PHE A 302 N ILE A 136 SHEET 1 C 2 ALA A 140 THR A 142 0 SHEET 2 C 2 ARG A 268 PRO A 270 -1 O ARG A 269 N GLU A 141 SHEET 1 D 4 ILE A 226 LYS A 227 0 SHEET 2 D 4 GLN A 195 ILE A 199 1 N ILE A 198 O LYS A 227 SHEET 3 D 4 ASP A 172 ILE A 176 1 N ILE A 175 O HIS A 197 SHEET 4 D 4 VAL A 262 LEU A 264 1 O VAL A 263 N VAL A 174 SHEET 1 E 3 VAL A 232 LYS A 239 0 SHEET 2 E 3 GLU A 242 TYR A 247 -1 O GLU A 244 N LYS A 236 SHEET 3 E 3 LYS A 255 THR A 259 -1 O THR A 259 N TYR A 243 SHEET 1 F 5 VAL A 345 ILE A 347 0 SHEET 2 F 5 LEU A 353 GLY A 357 -1 O LEU A 353 N ILE A 347 SHEET 3 F 5 LEU A 404 ILE A 410 -1 O MET A 409 N SER A 354 SHEET 4 F 5 VAL A 392 GLU A 398 -1 N LYS A 394 O TRP A 408 SHEET 5 F 5 ILE A 370 ASN A 376 -1 N ALA A 373 O LEU A 395 SHEET 1 G 6 LEU B 102 LYS B 106 0 SHEET 2 G 6 VAL B 28 ASP B 32 1 N MET B 30 O THR B 103 SHEET 3 G 6 LEU B 1 ILE B 8 1 N VAL B 7 O LEU B 29 SHEET 4 G 6 GLU B 126 ILE B 136 1 O GLU B 130 N LEU B 1 SHEET 5 G 6 HIS B 116 LYS B 120 -1 N VAL B 117 O ALA B 129 SHEET 6 G 6 TYR B 108 ASP B 113 -1 N LYS B 112 O HIS B 116 SHEET 1 H 5 LEU B 102 LYS B 106 0 SHEET 2 H 5 VAL B 28 ASP B 32 1 N MET B 30 O THR B 103 SHEET 3 H 5 LEU B 1 ILE B 8 1 N VAL B 7 O LEU B 29 SHEET 4 H 5 GLU B 126 ILE B 136 1 O GLU B 130 N LEU B 1 SHEET 5 H 5 VAL B 301 ALA B 303 1 O PHE B 302 N MET B 134 SHEET 1 I 2 ALA B 140 THR B 142 0 SHEET 2 I 2 ARG B 268 PRO B 270 -1 O ARG B 269 N GLU B 141 SHEET 1 J 4 ILE B 226 LYS B 227 0 SHEET 2 J 4 GLN B 195 ILE B 199 1 N ILE B 198 O LYS B 227 SHEET 3 J 4 ASP B 172 ILE B 176 1 N ILE B 175 O HIS B 197 SHEET 4 J 4 VAL B 262 LEU B 264 1 O VAL B 263 N ILE B 176 SHEET 1 K 3 VAL B 232 LYS B 239 0 SHEET 2 K 3 GLU B 242 SER B 248 -1 O ILE B 246 N GLU B 234 SHEET 3 K 3 LYS B 254 THR B 259 -1 O ILE B 257 N VAL B 245 SHEET 1 L 5 VAL B 345 ILE B 347 0 SHEET 2 L 5 SER B 352 GLY B 357 -1 O LEU B 353 N ILE B 347 SHEET 3 L 5 LEU B 404 GLY B 411 -1 O MET B 409 N SER B 354 SHEET 4 L 5 VAL B 392 GLU B 398 -1 N LYS B 394 O TRP B 408 SHEET 5 L 5 ILE B 370 ASN B 376 -1 N VAL B 371 O PHE B 397 CISPEP 1 ILE A 350 PRO A 351 0 -2.08 CISPEP 2 HIS A 441 PRO A 442 0 4.57 CISPEP 3 ILE B 350 PRO B 351 0 -2.54 CISPEP 4 HIS B 441 PRO B 442 0 3.36 SITE 1 AC1 23 ILE A 8 GLY A 9 GLY A 11 GLY A 12 SITE 2 AC1 23 ALA A 13 ALA A 31 ASP A 32 PRO A 33 SITE 3 AC1 23 LYS A 34 GLY A 39 ASN A 40 CYS A 41 SITE 4 AC1 23 TYR A 108 VAL A 109 ALA A 137 SER A 138 SITE 5 AC1 23 GLY A 139 ALA A 140 GLY A 305 ASP A 306 SITE 6 AC1 23 HOH A 467 HOH A 471 HOH A 484 SITE 1 AC2 8 ARG A 53 GLN A 57 ARG A 61 VAL A 412 SITE 2 AC2 8 HIS A 413 GLN A 415 TYR A 416 HOH A 486 SITE 1 AC3 23 ILE B 8 GLY B 9 GLY B 11 GLY B 12 SITE 2 AC3 23 ALA B 13 ALA B 31 ASP B 32 PRO B 33 SITE 3 AC3 23 LYS B 34 GLY B 39 ASN B 40 CYS B 41 SITE 4 AC3 23 TYR B 108 VAL B 109 ALA B 137 SER B 138 SITE 5 AC3 23 GLY B 139 ALA B 140 GLY B 305 ASP B 306 SITE 6 AC3 23 HOH B 467 HOH B 470 HOH B 471 SITE 1 AC4 8 ARG B 53 GLN B 57 ARG B 61 VAL B 412 SITE 2 AC4 8 HIS B 413 GLN B 415 HOH B 473 HOH B 477 CRYST1 114.186 126.737 165.993 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008758 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006024 0.00000