HEADER TRANSFERASE 31-DEC-09 3L8M TITLE CRYSTAL STRUCTURE OF A PROBABLE THIAMINE PYROPHOSPHOKINASE TITLE 2 FROM STAPHYLOCOCCUS SAPROPHYTICUS SUBSP. SAPROPHYTICUS. TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ID SYR86 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE THIAMINE PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SAPROPHYTICUS; SOURCE 3 ORGANISM_TAXID: 342451; SOURCE 4 STRAIN: SUBSP. SAPROPHYTICUS ATCC 15305 / DSM 20229; SOURCE 5 GENE: SSP1549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS THIAMIN DIPHOSPHATE BIOSYNTHETIC PROCESS, ATP BINDING, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KINASE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.SEETHARAMAN,S.LEW,D.WANG,H.JANJUA,K.CUNNINGHAM,L.OWENS, AUTHOR 2 R.XIAO,J.LIU,M.C.BARAN,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT, AUTHOR 3 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 1 09-FEB-10 3L8M 0 JRNL AUTH J.SEETHARAMAN,S.LEW,D.WANG,H.JANJUA,K.CUNNINGHAM, JRNL AUTH 2 L.OWENS,R.XIAO,J.LIU,M.C.BARAN,T.B.ACTON, JRNL AUTH 3 G.T.MONTELIONE,J.F.HUNT,L.TONG, JRNL AUTH 4 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL CRYSTAL STRUCTURE OF A PROBABLE THIAMINE JRNL TITL 2 PYROPHOSPHOKINASE FROM STAPHYLOCOCCUS SAPROPHYTICUS JRNL TITL 3 SUBSP. SAPROPHYTICUS. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 4 CONSORTIUM TARGET ID SYR86 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 149461.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 36983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1831 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5168 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 316 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2805 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.77000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -3.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.89 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.840 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.330 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.260 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.870 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 57.46 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3L8M COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB056970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.12800 REMARK 200 R SYM FOR SHELL (I) : 0.12500 REMARK 200 FOR SHELL : 15.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RBCL, 100MM SODIUM CITRATE, PH 4.2, REMARK 280 MICROBATCH UNDER OIL METHOD, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.01200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.01200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.01200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 101.87300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 50.93650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 88.22461 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 50.93650 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 88.22461 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 -44.01200 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 -44.01200 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 101.87300 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 -44.01200 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 71 REMARK 465 GLU A 72 REMARK 465 LYS A 73 REMARK 465 THR A 145 REMARK 465 TYR A 146 REMARK 465 SER A 147 REMARK 465 GLU A 148 REMARK 465 GLN A 149 REMARK 465 TYR A 160 REMARK 465 THR A 177 REMARK 465 LEU A 178 REMARK 465 LYS A 179 REMARK 465 LEU A 180 REMARK 465 GLY A 181 REMARK 465 SER A 182 REMARK 465 THR A 183 REMARK 465 SER A 191 REMARK 465 GLN A 192 REMARK 465 SER A 193 REMARK 465 ASP B 50 REMARK 465 SER B 51 REMARK 465 ILE B 52 REMARK 465 SER B 53 REMARK 465 ASP B 54 REMARK 465 SER B 55 REMARK 465 GLN B 61 REMARK 465 GLN B 62 REMARK 465 GLN B 63 REMARK 465 ILE B 64 REMARK 465 GLU B 65 REMARK 465 ILE B 66 REMARK 465 ASN B 67 REMARK 465 PRO B 68 REMARK 465 TYR B 69 REMARK 465 ASN B 70 REMARK 465 SER B 71 REMARK 465 GLU B 72 REMARK 465 LYS B 73 REMARK 465 ILE B 159 REMARK 465 PHE B 169 REMARK 465 LYS B 170 REMARK 465 TYR B 171 REMARK 465 ASN B 172 REMARK 465 LEU B 173 REMARK 465 GLN B 174 REMARK 465 ASN B 175 REMARK 465 GLU B 176 REMARK 465 ASN B 188 REMARK 465 GLU B 189 REMARK 465 LEU B 190 REMARK 465 ILE B 199 REMARK 465 ILE B 200 REMARK 465 GLU B 201 REMARK 465 GLU B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 48 CG OD1 REMARK 470 SER A 51 CB OG REMARK 470 ILE A 159 CG1 CG2 CD1 REMARK 470 LEU A 166 CG CD1 CD2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 PHE A 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 TYR A 171 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 184 CG CD1 CD2 REMARK 470 GLU A 189 CG CD OE1 OE2 REMARK 470 LEU A 190 CG CD1 CD2 REMARK 470 ASP B 48 CG OD1 REMARK 470 PHE B 49 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 58 CG OD1 ND2 REMARK 470 PHE B 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 60 CG1 CG2 CD1 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 PHE B 142 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 146 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 TYR B 160 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 166 CG CD1 CD2 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 THR B 177 OG1 CG2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 GLN B 192 CG CD OE1 NE2 REMARK 470 ASN B 196 CG OD1 ND2 REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 48 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 48 N - CA - C ANGL. DEV. = -29.1 DEGREES REMARK 500 PHE A 49 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 PRO A 161 CA - N - CD ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -120.69 54.00 REMARK 500 SER A 53 149.31 -178.60 REMARK 500 GLN A 61 42.66 -87.54 REMARK 500 GLN A 62 -22.79 -160.17 REMARK 500 ILE A 64 -51.17 -126.66 REMARK 500 ASN A 122 48.80 -102.87 REMARK 500 ASN A 143 -128.81 -105.67 REMARK 500 LEU A 166 -84.10 -119.61 REMARK 500 PHE A 169 -134.80 -157.78 REMARK 500 LYS A 170 -111.20 -72.82 REMARK 500 TYR A 171 86.15 60.83 REMARK 500 THR A 185 44.81 -85.75 REMARK 500 ILE A 186 32.10 -92.41 REMARK 500 SER A 187 56.65 167.55 REMARK 500 GLU A 189 52.86 -152.51 REMARK 500 HIS B 15 19.01 58.63 REMARK 500 ASP B 29 -103.32 78.86 REMARK 500 PHE B 59 -153.49 -61.64 REMARK 500 ASN B 122 47.82 -95.42 REMARK 500 SER B 165 -153.74 -116.55 REMARK 500 LYS B 167 16.75 -140.65 REMARK 500 LEU B 184 -138.52 -106.73 REMARK 500 THR B 185 100.38 -33.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP A 48 48.0 L L OUTSIDE RANGE REMARK 500 PHE A 49 46.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A8001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 94 OD1 REMARK 620 2 ASN A 124 O 127.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A8003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 232 O REMARK 620 2 HOH B 222 O 148.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 8001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 8003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 8002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SYR86 RELATED DB: TARGETDB DBREF 3L8M A 1 211 UNP Q49X04 Q49X04_STAS1 1 211 DBREF 3L8M B 1 211 UNP Q49X04 Q49X04_STAS1 1 211 SEQADV 3L8M GLU A 212 UNP Q49X04 EXPRESSION TAG SEQADV 3L8M GLU B 212 UNP Q49X04 EXPRESSION TAG SEQRES 1 A 212 MSE LYS ALA ASN LEU LEU CYS GLY ASN ARG ASN LEU PRO SEQRES 2 A 212 LYS HIS ILE LEU VAL GLU HIS LYS HIS GLU HIS TRP ILE SEQRES 3 A 212 GLY ILE ASP ARG GLY THR LEU ILE LEU LEU GLU SER GLY SEQRES 4 A 212 ILE THR PRO GLN PHE ALA VAL GLY ASP PHE ASP SER ILE SEQRES 5 A 212 SER ASP SER GLU ARG ASN PHE ILE GLN GLN GLN ILE GLU SEQRES 6 A 212 ILE ASN PRO TYR ASN SER GLU LYS ASP ASP THR ASP LEU SEQRES 7 A 212 ALA LEU GLY ILE ASP GLN ALA VAL LYS ARG GLY TYR ARG SEQRES 8 A 212 ASN ILE ASP VAL TYR GLY ALA THR GLY GLY ARG LEU ASP SEQRES 9 A 212 HIS PHE MSE GLY ALA LEU GLN ILE LEU GLU LYS PRO GLU SEQRES 10 A 212 TYR ALA LYS MSE ASN ILE ASN ILE LYS LEU ILE ASP ASP SEQRES 11 A 212 THR ASN GLU ILE GLN PHE ILE GLN LYS GLY GLN PHE ASN SEQRES 12 A 212 VAL THR TYR SER GLU GLN PHE PRO TYR ILE SER PHE ILE SEQRES 13 A 212 PRO VAL ILE TYR PRO THR VAL ILE SER LEU LYS GLY PHE SEQRES 14 A 212 LYS TYR ASN LEU GLN ASN GLU THR LEU LYS LEU GLY SER SEQRES 15 A 212 THR LEU THR ILE SER ASN GLU LEU SER GLN SER CYS GLY SEQRES 16 A 212 ASN ILE GLU ILE ILE GLU GLY SER VAL LEU MSE ILE ARG SEQRES 17 A 212 SER LYS ASP GLU SEQRES 1 B 212 MSE LYS ALA ASN LEU LEU CYS GLY ASN ARG ASN LEU PRO SEQRES 2 B 212 LYS HIS ILE LEU VAL GLU HIS LYS HIS GLU HIS TRP ILE SEQRES 3 B 212 GLY ILE ASP ARG GLY THR LEU ILE LEU LEU GLU SER GLY SEQRES 4 B 212 ILE THR PRO GLN PHE ALA VAL GLY ASP PHE ASP SER ILE SEQRES 5 B 212 SER ASP SER GLU ARG ASN PHE ILE GLN GLN GLN ILE GLU SEQRES 6 B 212 ILE ASN PRO TYR ASN SER GLU LYS ASP ASP THR ASP LEU SEQRES 7 B 212 ALA LEU GLY ILE ASP GLN ALA VAL LYS ARG GLY TYR ARG SEQRES 8 B 212 ASN ILE ASP VAL TYR GLY ALA THR GLY GLY ARG LEU ASP SEQRES 9 B 212 HIS PHE MSE GLY ALA LEU GLN ILE LEU GLU LYS PRO GLU SEQRES 10 B 212 TYR ALA LYS MSE ASN ILE ASN ILE LYS LEU ILE ASP ASP SEQRES 11 B 212 THR ASN GLU ILE GLN PHE ILE GLN LYS GLY GLN PHE ASN SEQRES 12 B 212 VAL THR TYR SER GLU GLN PHE PRO TYR ILE SER PHE ILE SEQRES 13 B 212 PRO VAL ILE TYR PRO THR VAL ILE SER LEU LYS GLY PHE SEQRES 14 B 212 LYS TYR ASN LEU GLN ASN GLU THR LEU LYS LEU GLY SER SEQRES 15 B 212 THR LEU THR ILE SER ASN GLU LEU SER GLN SER CYS GLY SEQRES 16 B 212 ASN ILE GLU ILE ILE GLU GLY SER VAL LEU MSE ILE ARG SEQRES 17 B 212 SER LYS ASP GLU MODRES 3L8M MSE A 1 MET SELENOMETHIONINE MODRES 3L8M MSE A 107 MET SELENOMETHIONINE MODRES 3L8M MSE A 121 MET SELENOMETHIONINE MODRES 3L8M MSE A 206 MET SELENOMETHIONINE MODRES 3L8M MSE B 1 MET SELENOMETHIONINE MODRES 3L8M MSE B 107 MET SELENOMETHIONINE MODRES 3L8M MSE B 121 MET SELENOMETHIONINE MODRES 3L8M MSE B 206 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 107 8 HET MSE A 121 8 HET MSE A 206 8 HET MSE B 1 8 HET MSE B 107 8 HET MSE B 121 8 HET MSE B 206 8 HET NA A8001 1 HET NA A8003 1 HET NA B8002 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 NA 3(NA 1+) FORMUL 6 HOH *96(H2 O) HELIX 1 1 HIS A 15 HIS A 20 1 6 HELIX 2 2 ASP A 29 SER A 38 1 10 HELIX 3 3 SER A 53 ILE A 64 1 12 HELIX 4 4 THR A 76 ARG A 88 1 13 HELIX 5 5 ARG A 102 GLU A 114 1 13 HELIX 6 6 LYS A 115 LYS A 120 1 6 HELIX 7 7 HIS B 15 HIS B 20 1 6 HELIX 8 8 ARG B 30 SER B 38 1 9 HELIX 9 9 THR B 76 ARG B 88 1 13 HELIX 10 10 ARG B 102 LYS B 115 1 14 HELIX 11 11 PRO B 116 MSE B 121 1 6 HELIX 12 12 LEU B 180 LEU B 184 5 5 SHEET 1 A 8 PHE A 44 VAL A 46 0 SHEET 2 A 8 HIS A 24 ILE A 28 1 N GLY A 27 O VAL A 46 SHEET 3 A 8 LYS A 2 LEU A 6 1 N ASN A 4 O ILE A 26 SHEET 4 A 8 ASN A 92 TYR A 96 1 O TYR A 96 N LEU A 5 SHEET 5 A 8 ASN A 124 ILE A 128 1 O LYS A 126 N VAL A 95 SHEET 6 A 8 ASN A 132 ILE A 137 -1 O ILE A 134 N LEU A 127 SHEET 7 A 8 VAL A 204 SER A 209 -1 O MSE A 206 N GLN A 135 SHEET 8 A 8 TYR A 152 PRO A 157 -1 N ILE A 156 O LEU A 205 SHEET 1 B 4 GLY A 140 PHE A 142 0 SHEET 2 B 4 ILE A 197 GLU A 201 -1 O ILE A 199 N GLY A 140 SHEET 3 B 4 THR A 162 SER A 165 -1 N ILE A 164 O GLU A 198 SHEET 4 B 4 GLN A 174 ASN A 175 -1 O GLN A 174 N VAL A 163 SHEET 1 C 8 PHE B 44 VAL B 46 0 SHEET 2 C 8 TRP B 25 ILE B 28 1 N GLY B 27 O PHE B 44 SHEET 3 C 8 LYS B 2 LEU B 6 1 N LEU B 6 O ILE B 26 SHEET 4 C 8 ASN B 92 TYR B 96 1 O ASN B 92 N ALA B 3 SHEET 5 C 8 ASN B 124 ILE B 128 1 O ILE B 128 N VAL B 95 SHEET 6 C 8 ASN B 132 ILE B 137 -1 O ILE B 134 N LEU B 127 SHEET 7 C 8 VAL B 204 SER B 209 -1 O MSE B 206 N GLN B 135 SHEET 8 C 8 TYR B 152 PRO B 157 -1 N SER B 154 O ILE B 207 SHEET 1 D 3 GLY B 140 THR B 145 0 SHEET 2 D 3 GLN B 192 GLU B 198 -1 O ILE B 197 N GLY B 140 SHEET 3 D 3 THR B 162 ILE B 164 -1 N THR B 162 O GLU B 198 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C PHE A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N GLY A 108 1555 1555 1.33 LINK C LYS A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N ASN A 122 1555 1555 1.33 LINK C LEU A 205 N MSE A 206 1555 1555 1.32 LINK C MSE A 206 N ILE A 207 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C PHE B 106 N MSE B 107 1555 1555 1.34 LINK C MSE B 107 N GLY B 108 1555 1555 1.33 LINK C LYS B 120 N MSE B 121 1555 1555 1.33 LINK C MSE B 121 N ASN B 122 1555 1555 1.33 LINK C LEU B 205 N MSE B 206 1555 1555 1.33 LINK C MSE B 206 N ILE B 207 1555 1555 1.33 LINK OD1 ASP A 94 NA NA A8001 1555 1555 2.85 LINK NA NA A8003 O HOH A 232 1555 1555 2.88 LINK NA NA A8003 O HOH B 222 1555 1555 2.96 LINK O ASN A 124 NA NA A8001 1555 1555 2.98 SITE 1 AC1 4 ILE A 93 ASP A 94 ASN A 124 LYS A 126 SITE 1 AC2 5 ASN A 11 GLY A 100 HOH A 232 ASN B 11 SITE 2 AC2 5 HOH B 222 SITE 1 AC3 3 GLN B 43 ARG B 88 TYR B 90 CRYST1 101.873 101.873 88.024 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009816 0.005667 0.000000 0.00000 SCALE2 0.000000 0.011335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011361 0.00000 HETATM 1 N MSE A 1 45.819 21.594 36.009 1.00 50.13 N HETATM 2 CA MSE A 1 45.177 22.350 34.900 1.00 36.72 C HETATM 3 C MSE A 1 43.930 23.016 35.465 1.00 39.92 C HETATM 4 O MSE A 1 43.121 22.362 36.117 1.00 28.27 O HETATM 5 CB MSE A 1 44.817 21.396 33.757 1.00 39.24 C HETATM 6 CG MSE A 1 44.346 22.093 32.494 1.00 32.91 C HETATM 7 SE MSE A 1 44.469 20.957 30.940 0.76 52.54 SE HETATM 8 CE MSE A 1 42.869 19.923 31.197 1.00 52.45 C