data_3L9B # _entry.id 3L9B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L9B pdb_00003l9b 10.2210/pdb3l9b/pdb RCSB RCSB056995 ? ? WWPDB D_1000056995 ? ? # _pdbx_database_status.entry_id 3L9B _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-01-04 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Helfmann, S.' 1 ? 'Neumann, P.' 2 ? # _citation.id primary _citation.title 'The crystal structure of the C2A domain of otoferlin reveals an unconventional top loop region.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 406 _citation.page_first 479 _citation.page_last 490 _citation.year 2011 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21216247 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.12.031 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Helfmann, S.' 1 ? primary 'Neumann, P.' 2 ? primary 'Tittmann, K.' 3 ? primary 'Moser, T.' 4 ? primary 'Ficner, R.' 5 ? primary 'Reisinger, E.' 6 ? # _cell.length_a 100.300 _cell.length_b 100.300 _cell.length_c 30.000 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3L9B _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'I 41' _symmetry.entry_id 3L9B _symmetry.Int_Tables_number 80 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Otoferlin 16412.512 1 ? ? 'C2A domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Fer-1-like protein 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNE VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGT ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNE VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ALA n 1 23 LEU n 1 24 ILE n 1 25 VAL n 1 26 HIS n 1 27 LEU n 1 28 LYS n 1 29 THR n 1 30 VAL n 1 31 SER n 1 32 GLU n 1 33 LEU n 1 34 ARG n 1 35 GLY n 1 36 ARG n 1 37 ALA n 1 38 ASP n 1 39 ARG n 1 40 ILE n 1 41 ALA n 1 42 LYS n 1 43 VAL n 1 44 THR n 1 45 PHE n 1 46 ARG n 1 47 GLY n 1 48 GLN n 1 49 SER n 1 50 PHE n 1 51 TYR n 1 52 SER n 1 53 ARG n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 ASN n 1 58 CYS n 1 59 GLU n 1 60 ASP n 1 61 VAL n 1 62 ALA n 1 63 ASP n 1 64 PHE n 1 65 ASP n 1 66 GLU n 1 67 THR n 1 68 PHE n 1 69 ARG n 1 70 TRP n 1 71 PRO n 1 72 VAL n 1 73 ALA n 1 74 SER n 1 75 SER n 1 76 ILE n 1 77 ASP n 1 78 ARG n 1 79 ASN n 1 80 GLU n 1 81 VAL n 1 82 LEU n 1 83 GLU n 1 84 ILE n 1 85 GLN n 1 86 ILE n 1 87 PHE n 1 88 ASN n 1 89 TYR n 1 90 SER n 1 91 LYS n 1 92 VAL n 1 93 PHE n 1 94 SER n 1 95 ASN n 1 96 LYS n 1 97 LEU n 1 98 ILE n 1 99 GLY n 1 100 THR n 1 101 PHE n 1 102 ARG n 1 103 MET n 1 104 VAL n 1 105 LEU n 1 106 GLN n 1 107 LYS n 1 108 VAL n 1 109 VAL n 1 110 GLU n 1 111 GLU n 1 112 ASN n 1 113 ARG n 1 114 VAL n 1 115 GLU n 1 116 VAL n 1 117 SER n 1 118 ASP n 1 119 THR n 1 120 LEU n 1 121 ILE n 1 122 ASP n 1 123 ASP n 1 124 ASN n 1 125 ASN n 1 126 ALA n 1 127 ILE n 1 128 ILE n 1 129 LYS n 1 130 THR n 1 131 SER n 1 132 LEU n 1 133 SER n 1 134 MET n 1 135 GLU n 1 136 VAL n 1 137 ARG n 1 138 TYR n 1 139 GLN n 1 140 ALA n 1 141 ALA n 1 142 ASP n 1 143 GLY n 1 144 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name rat _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Fer1l2, Otof' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code OTOF_RAT _struct_ref.pdbx_db_accession Q9ERC5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGT FRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADGT ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L9B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 21 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 144 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9ERC5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 124 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3L9B MET A 1 ? UNP Q9ERC5 ? ? 'expression tag' -19 1 1 3L9B GLY A 2 ? UNP Q9ERC5 ? ? 'expression tag' -18 2 1 3L9B SER A 3 ? UNP Q9ERC5 ? ? 'expression tag' -17 3 1 3L9B SER A 4 ? UNP Q9ERC5 ? ? 'expression tag' -16 4 1 3L9B HIS A 5 ? UNP Q9ERC5 ? ? 'expression tag' -15 5 1 3L9B HIS A 6 ? UNP Q9ERC5 ? ? 'expression tag' -14 6 1 3L9B HIS A 7 ? UNP Q9ERC5 ? ? 'expression tag' -13 7 1 3L9B HIS A 8 ? UNP Q9ERC5 ? ? 'expression tag' -12 8 1 3L9B HIS A 9 ? UNP Q9ERC5 ? ? 'expression tag' -11 9 1 3L9B HIS A 10 ? UNP Q9ERC5 ? ? 'expression tag' -10 10 1 3L9B SER A 11 ? UNP Q9ERC5 ? ? 'expression tag' -9 11 1 3L9B SER A 12 ? UNP Q9ERC5 ? ? 'expression tag' -8 12 1 3L9B GLY A 13 ? UNP Q9ERC5 ? ? 'expression tag' -7 13 1 3L9B LEU A 14 ? UNP Q9ERC5 ? ? 'expression tag' -6 14 1 3L9B VAL A 15 ? UNP Q9ERC5 ? ? 'expression tag' -5 15 1 3L9B PRO A 16 ? UNP Q9ERC5 ? ? 'expression tag' -4 16 1 3L9B ARG A 17 ? UNP Q9ERC5 ? ? 'expression tag' -3 17 1 3L9B GLY A 18 ? UNP Q9ERC5 ? ? 'expression tag' -2 18 1 3L9B SER A 19 ? UNP Q9ERC5 ? ? 'expression tag' -1 19 1 3L9B HIS A 20 ? UNP Q9ERC5 ? ? 'expression tag' 0 20 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3L9B _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 46.49 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details 'PEG 4000, MgCl2, pH 8.5, vapor diffusion, sitting drop, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2009-03-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator Mirrors _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? # _reflns.entry_id 3L9B _reflns.d_resolution_high 1.950 _reflns.number_obs 10992 _reflns.pdbx_Rmerge_I_obs 0.060 _reflns.pdbx_netI_over_sigmaI 15.030 _reflns.percent_possible_obs 98.300 _reflns.B_iso_Wilson_estimate 31.179 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.00 _reflns.number_all ? _reflns.pdbx_Rsym_value 0.073 _reflns.pdbx_redundancy 3.01 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.05 _reflns_shell.number_measured_obs 4473 _reflns_shell.number_measured_all ? _reflns_shell.number_unique_obs 1522 _reflns_shell.Rmerge_I_obs 0.473 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_Rsym_value 0.577 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 2.93 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4473 _reflns_shell.percent_possible_all 99.30 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3L9B _refine.ls_d_res_high 1.950 _refine.ls_d_res_low 24.937 _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.410 _refine.ls_number_reflns_obs 10990 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;Refinement in phenix.refine using automatic procedure to determine the weights between X-ray target and stereochemistry/ADP restraints, mask optimisation ; _refine.ls_R_factor_all 0.3451 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_R_work 0.181 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.229 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.010 _refine.ls_number_reflns_R_free 551 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 32.871 _refine.solvent_model_param_bsol 39.363 _refine.solvent_model_param_ksol 0.310 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.227 _refine.aniso_B[2][2] -1.227 _refine.aniso_B[3][3] 2.454 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.260 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1DSY' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.829 _refine.B_iso_max 103.32 _refine.B_iso_min 12.62 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I 0 _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3L9B _refine_analyze.Luzzati_coordinate_error_obs 0.26 _refine_analyze.Luzzati_sigma_a_obs 1.2 _refine_analyze.Luzzati_d_res_low_obs 8 _refine_analyze.Luzzati_coordinate_error_free 0.29 _refine_analyze.Luzzati_sigma_a_free 0.27 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1015 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1159 _refine_hist.d_res_high 1.950 _refine_hist.d_res_low 24.937 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 1059 0.006 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1434 0.981 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 167 0.073 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 186 0.003 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 392 17.992 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.950 2.146 4 99.000 2598 . 0.236 0.300 . 138 . 2736 . . 'X-RAY DIFFRACTION' 2.146 2.457 4 99.000 2576 . 0.203 0.254 . 135 . 2711 . . 'X-RAY DIFFRACTION' 2.457 3.094 4 99.000 2615 . 0.183 0.252 . 138 . 2753 . . 'X-RAY DIFFRACTION' 3.094 24.939 4 97.000 2650 . 0.159 0.196 . 140 . 2790 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3L9B _struct.title 'Crystal Structure of Rat Otoferlin C2A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L9B _struct_keywords.text 'Otoferlin, C2-domain, beta-sheets, Cell membrane, Synaptic vesicle, Hearing, Membrane, Synapse, Transmembrane, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 105 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 112 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 85 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 92 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 62 ? VAL A 72 ? ALA A 42 VAL A 52 A 2 MET A 21 ? SER A 31 ? MET A 1 SER A 11 A 3 ILE A 127 ? ALA A 140 ? ILE A 107 ALA A 120 A 4 ARG A 113 ? ILE A 121 ? ARG A 93 ILE A 101 B 1 GLN A 48 ? TYR A 51 ? GLN A 28 TYR A 31 B 2 ALA A 37 ? PHE A 45 ? ALA A 17 PHE A 25 B 3 LEU A 55 ? CYS A 58 ? LEU A 35 CYS A 38 C 1 GLN A 48 ? TYR A 51 ? GLN A 28 TYR A 31 C 2 ALA A 37 ? PHE A 45 ? ALA A 17 PHE A 25 C 3 VAL A 81 ? TYR A 89 ? VAL A 61 TYR A 69 C 4 LYS A 96 ? VAL A 104 ? LYS A 76 VAL A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ALA A 62 ? O ALA A 42 N VAL A 30 ? N VAL A 10 A 2 3 N ILE A 24 ? N ILE A 4 O ARG A 137 ? O ARG A 117 A 3 4 O MET A 134 ? O MET A 114 N VAL A 116 ? N VAL A 96 B 1 2 O PHE A 50 ? O PHE A 30 N VAL A 43 ? N VAL A 23 B 2 3 N ARG A 39 ? N ARG A 19 O LEU A 55 ? O LEU A 35 C 1 2 O PHE A 50 ? O PHE A 30 N VAL A 43 ? N VAL A 23 C 2 3 N ILE A 40 ? N ILE A 20 O PHE A 87 ? O PHE A 67 C 3 4 N ILE A 86 ? N ILE A 66 O ILE A 98 ? O ILE A 78 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MG _struct_site.pdbx_auth_seq_id 125 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MG A 125' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLU A 66 ? GLU A 46 . ? 1_555 ? 2 AC1 6 GLU A 66 ? GLU A 46 . ? 6_555 ? 3 AC1 6 THR A 67 ? THR A 47 . ? 1_555 ? 4 AC1 6 THR A 67 ? THR A 47 . ? 6_555 ? 5 AC1 6 HOH C . ? HOH A 152 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 152 . ? 6_555 ? # _atom_sites.entry_id 3L9B _atom_sites.fract_transf_matrix[1][1] 0.009970 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009970 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033333 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -19 ? ? ? A . n A 1 2 GLY 2 -18 ? ? ? A . n A 1 3 SER 3 -17 ? ? ? A . n A 1 4 SER 4 -16 ? ? ? A . n A 1 5 HIS 5 -15 ? ? ? A . n A 1 6 HIS 6 -14 ? ? ? A . n A 1 7 HIS 7 -13 ? ? ? A . n A 1 8 HIS 8 -12 ? ? ? A . n A 1 9 HIS 9 -11 ? ? ? A . n A 1 10 HIS 10 -10 ? ? ? A . n A 1 11 SER 11 -9 ? ? ? A . n A 1 12 SER 12 -8 ? ? ? A . n A 1 13 GLY 13 -7 ? ? ? A . n A 1 14 LEU 14 -6 ? ? ? A . n A 1 15 VAL 15 -5 ? ? ? A . n A 1 16 PRO 16 -4 ? ? ? A . n A 1 17 ARG 17 -3 ? ? ? A . n A 1 18 GLY 18 -2 ? ? ? A . n A 1 19 SER 19 -1 -1 SER SER A . n A 1 20 HIS 20 0 0 HIS HIS A . n A 1 21 MET 21 1 1 MET MET A . n A 1 22 ALA 22 2 2 ALA ALA A . n A 1 23 LEU 23 3 3 LEU LEU A . n A 1 24 ILE 24 4 4 ILE ILE A . n A 1 25 VAL 25 5 5 VAL VAL A . n A 1 26 HIS 26 6 6 HIS HIS A . n A 1 27 LEU 27 7 7 LEU LEU A . n A 1 28 LYS 28 8 8 LYS LYS A . n A 1 29 THR 29 9 9 THR THR A . n A 1 30 VAL 30 10 10 VAL VAL A . n A 1 31 SER 31 11 11 SER SER A . n A 1 32 GLU 32 12 12 GLU GLU A . n A 1 33 LEU 33 13 13 LEU LEU A . n A 1 34 ARG 34 14 14 ARG ARG A . n A 1 35 GLY 35 15 15 GLY GLY A . n A 1 36 ARG 36 16 16 ARG ARG A . n A 1 37 ALA 37 17 17 ALA ALA A . n A 1 38 ASP 38 18 18 ASP ASP A . n A 1 39 ARG 39 19 19 ARG ARG A . n A 1 40 ILE 40 20 20 ILE ILE A . n A 1 41 ALA 41 21 21 ALA ALA A . n A 1 42 LYS 42 22 22 LYS LYS A . n A 1 43 VAL 43 23 23 VAL VAL A . n A 1 44 THR 44 24 24 THR THR A . n A 1 45 PHE 45 25 25 PHE PHE A . n A 1 46 ARG 46 26 26 ARG ARG A . n A 1 47 GLY 47 27 27 GLY GLY A . n A 1 48 GLN 48 28 28 GLN GLN A . n A 1 49 SER 49 29 29 SER SER A . n A 1 50 PHE 50 30 30 PHE PHE A . n A 1 51 TYR 51 31 31 TYR TYR A . n A 1 52 SER 52 32 32 SER SER A . n A 1 53 ARG 53 33 33 ARG ARG A . n A 1 54 VAL 54 34 34 VAL VAL A . n A 1 55 LEU 55 35 35 LEU LEU A . n A 1 56 GLU 56 36 36 GLU GLU A . n A 1 57 ASN 57 37 37 ASN ASN A . n A 1 58 CYS 58 38 38 CYS CYS A . n A 1 59 GLU 59 39 39 GLU GLU A . n A 1 60 ASP 60 40 40 ASP ASP A . n A 1 61 VAL 61 41 41 VAL VAL A . n A 1 62 ALA 62 42 42 ALA ALA A . n A 1 63 ASP 63 43 43 ASP ASP A . n A 1 64 PHE 64 44 44 PHE PHE A . n A 1 65 ASP 65 45 45 ASP ASP A . n A 1 66 GLU 66 46 46 GLU GLU A . n A 1 67 THR 67 47 47 THR THR A . n A 1 68 PHE 68 48 48 PHE PHE A . n A 1 69 ARG 69 49 49 ARG ARG A . n A 1 70 TRP 70 50 50 TRP TRP A . n A 1 71 PRO 71 51 51 PRO PRO A . n A 1 72 VAL 72 52 52 VAL VAL A . n A 1 73 ALA 73 53 53 ALA ALA A . n A 1 74 SER 74 54 54 SER SER A . n A 1 75 SER 75 55 55 SER SER A . n A 1 76 ILE 76 56 56 ILE ILE A . n A 1 77 ASP 77 57 57 ASP ASP A . n A 1 78 ARG 78 58 58 ARG ARG A . n A 1 79 ASN 79 59 59 ASN ASN A . n A 1 80 GLU 80 60 60 GLU GLU A . n A 1 81 VAL 81 61 61 VAL VAL A . n A 1 82 LEU 82 62 62 LEU LEU A . n A 1 83 GLU 83 63 63 GLU GLU A . n A 1 84 ILE 84 64 64 ILE ILE A . n A 1 85 GLN 85 65 65 GLN GLN A . n A 1 86 ILE 86 66 66 ILE ILE A . n A 1 87 PHE 87 67 67 PHE PHE A . n A 1 88 ASN 88 68 68 ASN ASN A . n A 1 89 TYR 89 69 69 TYR TYR A . n A 1 90 SER 90 70 70 SER SER A . n A 1 91 LYS 91 71 71 LYS LYS A . n A 1 92 VAL 92 72 72 VAL VAL A . n A 1 93 PHE 93 73 73 PHE PHE A . n A 1 94 SER 94 74 74 SER SER A . n A 1 95 ASN 95 75 75 ASN ASN A . n A 1 96 LYS 96 76 76 LYS LYS A . n A 1 97 LEU 97 77 77 LEU LEU A . n A 1 98 ILE 98 78 78 ILE ILE A . n A 1 99 GLY 99 79 79 GLY GLY A . n A 1 100 THR 100 80 80 THR THR A . n A 1 101 PHE 101 81 81 PHE PHE A . n A 1 102 ARG 102 82 82 ARG ARG A . n A 1 103 MET 103 83 83 MET MET A . n A 1 104 VAL 104 84 84 VAL VAL A . n A 1 105 LEU 105 85 85 LEU LEU A . n A 1 106 GLN 106 86 86 GLN GLN A . n A 1 107 LYS 107 87 87 LYS LYS A . n A 1 108 VAL 108 88 88 VAL VAL A . n A 1 109 VAL 109 89 89 VAL VAL A . n A 1 110 GLU 110 90 90 GLU GLU A . n A 1 111 GLU 111 91 91 GLU GLU A . n A 1 112 ASN 112 92 92 ASN ASN A . n A 1 113 ARG 113 93 93 ARG ARG A . n A 1 114 VAL 114 94 94 VAL VAL A . n A 1 115 GLU 115 95 95 GLU GLU A . n A 1 116 VAL 116 96 96 VAL VAL A . n A 1 117 SER 117 97 97 SER SER A . n A 1 118 ASP 118 98 98 ASP ASP A . n A 1 119 THR 119 99 99 THR THR A . n A 1 120 LEU 120 100 100 LEU LEU A . n A 1 121 ILE 121 101 101 ILE ILE A . n A 1 122 ASP 122 102 102 ASP ASP A . n A 1 123 ASP 123 103 103 ASP ASP A . n A 1 124 ASN 124 104 104 ASN ASN A . n A 1 125 ASN 125 105 105 ASN ASN A . n A 1 126 ALA 126 106 106 ALA ALA A . n A 1 127 ILE 127 107 107 ILE ILE A . n A 1 128 ILE 128 108 108 ILE ILE A . n A 1 129 LYS 129 109 109 LYS LYS A . n A 1 130 THR 130 110 110 THR THR A . n A 1 131 SER 131 111 111 SER SER A . n A 1 132 LEU 132 112 112 LEU LEU A . n A 1 133 SER 133 113 113 SER SER A . n A 1 134 MET 134 114 114 MET MET A . n A 1 135 GLU 135 115 115 GLU GLU A . n A 1 136 VAL 136 116 116 VAL VAL A . n A 1 137 ARG 137 117 117 ARG ARG A . n A 1 138 TYR 138 118 118 TYR TYR A . n A 1 139 GLN 139 119 119 GLN GLN A . n A 1 140 ALA 140 120 120 ALA ALA A . n A 1 141 ALA 141 121 121 ALA ALA A . n A 1 142 ASP 142 122 122 ASP ASP A . n A 1 143 GLY 143 123 123 GLY GLY A . n A 1 144 THR 144 124 124 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 125 1 MG MG A . C 3 HOH 1 126 126 HOH HOH A . C 3 HOH 2 127 127 HOH HOH A . C 3 HOH 3 128 128 HOH HOH A . C 3 HOH 4 129 129 HOH HOH A . C 3 HOH 5 130 130 HOH HOH A . C 3 HOH 6 131 131 HOH HOH A . C 3 HOH 7 132 132 HOH HOH A . C 3 HOH 8 133 133 HOH HOH A . C 3 HOH 9 134 134 HOH HOH A . C 3 HOH 10 135 135 HOH HOH A . C 3 HOH 11 136 136 HOH HOH A . C 3 HOH 12 137 137 HOH HOH A . C 3 HOH 13 138 2 HOH HOH A . C 3 HOH 14 139 139 HOH HOH A . C 3 HOH 15 140 140 HOH HOH A . C 3 HOH 16 141 141 HOH HOH A . C 3 HOH 17 142 142 HOH HOH A . C 3 HOH 18 143 3 HOH HOH A . C 3 HOH 19 144 144 HOH HOH A . C 3 HOH 20 145 145 HOH HOH A . C 3 HOH 21 146 146 HOH HOH A . C 3 HOH 22 147 147 HOH HOH A . C 3 HOH 23 148 4 HOH HOH A . C 3 HOH 24 149 149 HOH HOH A . C 3 HOH 25 150 150 HOH HOH A . C 3 HOH 26 151 5 HOH HOH A . C 3 HOH 27 152 6 HOH HOH A . C 3 HOH 28 153 7 HOH HOH A . C 3 HOH 29 154 8 HOH HOH A . C 3 HOH 30 155 9 HOH HOH A . C 3 HOH 31 156 10 HOH HOH A . C 3 HOH 32 157 11 HOH HOH A . C 3 HOH 33 158 12 HOH HOH A . C 3 HOH 34 159 13 HOH HOH A . C 3 HOH 35 160 14 HOH HOH A . C 3 HOH 36 161 15 HOH HOH A . C 3 HOH 37 162 16 HOH HOH A . C 3 HOH 38 163 17 HOH HOH A . C 3 HOH 39 164 18 HOH HOH A . C 3 HOH 40 165 19 HOH HOH A . C 3 HOH 41 166 20 HOH HOH A . C 3 HOH 42 167 21 HOH HOH A . C 3 HOH 43 168 22 HOH HOH A . C 3 HOH 44 169 23 HOH HOH A . C 3 HOH 45 170 24 HOH HOH A . C 3 HOH 46 171 25 HOH HOH A . C 3 HOH 47 172 26 HOH HOH A . C 3 HOH 48 173 27 HOH HOH A . C 3 HOH 49 174 28 HOH HOH A . C 3 HOH 50 175 29 HOH HOH A . C 3 HOH 51 176 30 HOH HOH A . C 3 HOH 52 177 31 HOH HOH A . C 3 HOH 53 178 32 HOH HOH A . C 3 HOH 54 179 33 HOH HOH A . C 3 HOH 55 180 34 HOH HOH A . C 3 HOH 56 181 35 HOH HOH A . C 3 HOH 57 182 36 HOH HOH A . C 3 HOH 58 183 37 HOH HOH A . C 3 HOH 59 184 38 HOH HOH A . C 3 HOH 60 185 39 HOH HOH A . C 3 HOH 61 186 40 HOH HOH A . C 3 HOH 62 187 41 HOH HOH A . C 3 HOH 63 188 42 HOH HOH A . C 3 HOH 64 189 43 HOH HOH A . C 3 HOH 65 190 44 HOH HOH A . C 3 HOH 66 191 45 HOH HOH A . C 3 HOH 67 192 46 HOH HOH A . C 3 HOH 68 193 47 HOH HOH A . C 3 HOH 69 194 48 HOH HOH A . C 3 HOH 70 195 49 HOH HOH A . C 3 HOH 71 196 50 HOH HOH A . C 3 HOH 72 197 51 HOH HOH A . C 3 HOH 73 198 52 HOH HOH A . C 3 HOH 74 199 53 HOH HOH A . C 3 HOH 75 200 54 HOH HOH A . C 3 HOH 76 201 55 HOH HOH A . C 3 HOH 77 202 56 HOH HOH A . C 3 HOH 78 203 57 HOH HOH A . C 3 HOH 79 204 58 HOH HOH A . C 3 HOH 80 205 59 HOH HOH A . C 3 HOH 81 206 60 HOH HOH A . C 3 HOH 82 207 61 HOH HOH A . C 3 HOH 83 208 62 HOH HOH A . C 3 HOH 84 209 63 HOH HOH A . C 3 HOH 85 210 64 HOH HOH A . C 3 HOH 86 211 65 HOH HOH A . C 3 HOH 87 212 66 HOH HOH A . C 3 HOH 88 213 67 HOH HOH A . C 3 HOH 89 214 68 HOH HOH A . C 3 HOH 90 215 69 HOH HOH A . C 3 HOH 91 216 70 HOH HOH A . C 3 HOH 92 217 71 HOH HOH A . C 3 HOH 93 218 72 HOH HOH A . C 3 HOH 94 219 73 HOH HOH A . C 3 HOH 95 220 74 HOH HOH A . C 3 HOH 96 221 75 HOH HOH A . C 3 HOH 97 222 76 HOH HOH A . C 3 HOH 98 223 77 HOH HOH A . C 3 HOH 99 224 78 HOH HOH A . C 3 HOH 100 225 79 HOH HOH A . C 3 HOH 101 226 80 HOH HOH A . C 3 HOH 102 227 81 HOH HOH A . C 3 HOH 103 228 82 HOH HOH A . C 3 HOH 104 229 83 HOH HOH A . C 3 HOH 105 230 84 HOH HOH A . C 3 HOH 106 231 85 HOH HOH A . C 3 HOH 107 232 86 HOH HOH A . C 3 HOH 108 233 87 HOH HOH A . C 3 HOH 109 234 89 HOH HOH A . C 3 HOH 110 235 90 HOH HOH A . C 3 HOH 111 236 91 HOH HOH A . C 3 HOH 112 237 92 HOH HOH A . C 3 HOH 113 238 93 HOH HOH A . C 3 HOH 114 239 94 HOH HOH A . C 3 HOH 115 240 95 HOH HOH A . C 3 HOH 116 241 96 HOH HOH A . C 3 HOH 117 242 97 HOH HOH A . C 3 HOH 118 243 98 HOH HOH A . C 3 HOH 119 244 99 HOH HOH A . C 3 HOH 120 245 100 HOH HOH A . C 3 HOH 121 246 101 HOH HOH A . C 3 HOH 122 247 102 HOH HOH A . C 3 HOH 123 248 103 HOH HOH A . C 3 HOH 124 249 104 HOH HOH A . C 3 HOH 125 250 105 HOH HOH A . C 3 HOH 126 251 106 HOH HOH A . C 3 HOH 127 252 107 HOH HOH A . C 3 HOH 128 253 108 HOH HOH A . C 3 HOH 129 254 109 HOH HOH A . C 3 HOH 130 255 110 HOH HOH A . C 3 HOH 131 256 111 HOH HOH A . C 3 HOH 132 257 112 HOH HOH A . C 3 HOH 133 258 113 HOH HOH A . C 3 HOH 134 259 114 HOH HOH A . C 3 HOH 135 260 115 HOH HOH A . C 3 HOH 136 261 116 HOH HOH A . C 3 HOH 137 262 117 HOH HOH A . C 3 HOH 138 263 119 HOH HOH A . C 3 HOH 139 264 120 HOH HOH A . C 3 HOH 140 265 121 HOH HOH A . C 3 HOH 141 266 122 HOH HOH A . C 3 HOH 142 267 123 HOH HOH A . C 3 HOH 143 268 124 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 125 ? B MG . 2 1 A HOH 242 ? C HOH . 3 1 A HOH 248 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-09-17 4 'Structure model' 1 3 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -11.4466 _pdbx_refine_tls.origin_y -3.1639 _pdbx_refine_tls.origin_z -1.4974 _pdbx_refine_tls.T[1][1] 0.1643 _pdbx_refine_tls.T[2][2] 0.1096 _pdbx_refine_tls.T[3][3] 0.1526 _pdbx_refine_tls.T[1][2] -0.0174 _pdbx_refine_tls.T[1][3] -0.0434 _pdbx_refine_tls.T[2][3] 0.0088 _pdbx_refine_tls.L[1][1] 2.0604 _pdbx_refine_tls.L[2][2] 1.5969 _pdbx_refine_tls.L[3][3] 1.6557 _pdbx_refine_tls.L[1][2] 0.8731 _pdbx_refine_tls.L[1][3] -0.4101 _pdbx_refine_tls.L[2][3] 0.0373 _pdbx_refine_tls.S[1][1] -0.0395 _pdbx_refine_tls.S[2][2] -0.0182 _pdbx_refine_tls.S[3][3] 0.0604 _pdbx_refine_tls.S[1][2] 0.0495 _pdbx_refine_tls.S[1][3] 0.1597 _pdbx_refine_tls.S[2][3] 0.1978 _pdbx_refine_tls.S[2][1] -0.1033 _pdbx_refine_tls.S[3][1] -0.2324 _pdbx_refine_tls.S[3][2] 0.0137 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 124 _pdbx_refine_tls_group.selection_details 'chain A' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _pdbx_phasing_MR.entry_id 3L9B _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 57.080 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.600 _pdbx_phasing_MR.d_res_low_rotation 24.830 _pdbx_phasing_MR.d_res_high_translation 2.600 _pdbx_phasing_MR.d_res_low_translation 24.830 _pdbx_phasing_MR.packing 0.000 _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX 1.5_2 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 8 ? ? -91.52 -82.53 2 1 GLU A 39 ? ? -83.09 -108.70 3 1 GLU A 39 ? ? -92.74 -108.70 4 1 SER A 54 ? ? -122.77 -76.33 5 1 ASN A 92 ? ? 72.21 -22.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -19 ? A MET 1 2 1 Y 1 A GLY -18 ? A GLY 2 3 1 Y 1 A SER -17 ? A SER 3 4 1 Y 1 A SER -16 ? A SER 4 5 1 Y 1 A HIS -15 ? A HIS 5 6 1 Y 1 A HIS -14 ? A HIS 6 7 1 Y 1 A HIS -13 ? A HIS 7 8 1 Y 1 A HIS -12 ? A HIS 8 9 1 Y 1 A HIS -11 ? A HIS 9 10 1 Y 1 A HIS -10 ? A HIS 10 11 1 Y 1 A SER -9 ? A SER 11 12 1 Y 1 A SER -8 ? A SER 12 13 1 Y 1 A GLY -7 ? A GLY 13 14 1 Y 1 A LEU -6 ? A LEU 14 15 1 Y 1 A VAL -5 ? A VAL 15 16 1 Y 1 A PRO -4 ? A PRO 16 17 1 Y 1 A ARG -3 ? A ARG 17 18 1 Y 1 A GLY -2 ? A GLY 18 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MG MG MG N N 250 PHE N N N N 251 PHE CA C N S 252 PHE C C N N 253 PHE O O N N 254 PHE CB C N N 255 PHE CG C Y N 256 PHE CD1 C Y N 257 PHE CD2 C Y N 258 PHE CE1 C Y N 259 PHE CE2 C Y N 260 PHE CZ C Y N 261 PHE OXT O N N 262 PHE H H N N 263 PHE H2 H N N 264 PHE HA H N N 265 PHE HB2 H N N 266 PHE HB3 H N N 267 PHE HD1 H N N 268 PHE HD2 H N N 269 PHE HE1 H N N 270 PHE HE2 H N N 271 PHE HZ H N N 272 PHE HXT H N N 273 PRO N N N N 274 PRO CA C N S 275 PRO C C N N 276 PRO O O N N 277 PRO CB C N N 278 PRO CG C N N 279 PRO CD C N N 280 PRO OXT O N N 281 PRO H H N N 282 PRO HA H N N 283 PRO HB2 H N N 284 PRO HB3 H N N 285 PRO HG2 H N N 286 PRO HG3 H N N 287 PRO HD2 H N N 288 PRO HD3 H N N 289 PRO HXT H N N 290 SER N N N N 291 SER CA C N S 292 SER C C N N 293 SER O O N N 294 SER CB C N N 295 SER OG O N N 296 SER OXT O N N 297 SER H H N N 298 SER H2 H N N 299 SER HA H N N 300 SER HB2 H N N 301 SER HB3 H N N 302 SER HG H N N 303 SER HXT H N N 304 THR N N N N 305 THR CA C N S 306 THR C C N N 307 THR O O N N 308 THR CB C N R 309 THR OG1 O N N 310 THR CG2 C N N 311 THR OXT O N N 312 THR H H N N 313 THR H2 H N N 314 THR HA H N N 315 THR HB H N N 316 THR HG1 H N N 317 THR HG21 H N N 318 THR HG22 H N N 319 THR HG23 H N N 320 THR HXT H N N 321 TRP N N N N 322 TRP CA C N S 323 TRP C C N N 324 TRP O O N N 325 TRP CB C N N 326 TRP CG C Y N 327 TRP CD1 C Y N 328 TRP CD2 C Y N 329 TRP NE1 N Y N 330 TRP CE2 C Y N 331 TRP CE3 C Y N 332 TRP CZ2 C Y N 333 TRP CZ3 C Y N 334 TRP CH2 C Y N 335 TRP OXT O N N 336 TRP H H N N 337 TRP H2 H N N 338 TRP HA H N N 339 TRP HB2 H N N 340 TRP HB3 H N N 341 TRP HD1 H N N 342 TRP HE1 H N N 343 TRP HE3 H N N 344 TRP HZ2 H N N 345 TRP HZ3 H N N 346 TRP HH2 H N N 347 TRP HXT H N N 348 TYR N N N N 349 TYR CA C N S 350 TYR C C N N 351 TYR O O N N 352 TYR CB C N N 353 TYR CG C Y N 354 TYR CD1 C Y N 355 TYR CD2 C Y N 356 TYR CE1 C Y N 357 TYR CE2 C Y N 358 TYR CZ C Y N 359 TYR OH O N N 360 TYR OXT O N N 361 TYR H H N N 362 TYR H2 H N N 363 TYR HA H N N 364 TYR HB2 H N N 365 TYR HB3 H N N 366 TYR HD1 H N N 367 TYR HD2 H N N 368 TYR HE1 H N N 369 TYR HE2 H N N 370 TYR HH H N N 371 TYR HXT H N N 372 VAL N N N N 373 VAL CA C N S 374 VAL C C N N 375 VAL O O N N 376 VAL CB C N N 377 VAL CG1 C N N 378 VAL CG2 C N N 379 VAL OXT O N N 380 VAL H H N N 381 VAL H2 H N N 382 VAL HA H N N 383 VAL HB H N N 384 VAL HG11 H N N 385 VAL HG12 H N N 386 VAL HG13 H N N 387 VAL HG21 H N N 388 VAL HG22 H N N 389 VAL HG23 H N N 390 VAL HXT H N N 391 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DSY _pdbx_initial_refinement_model.details 'PDB ENTRY 1DSY' #