HEADER APOPTOSIS 06-JAN-10 3LAF TITLE STRUCTURE OF DCC, A NETRIN-1 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELETED IN COLORECTAL CANCER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 39-421; COMPND 5 SYNONYM: DELETED IN COLORECTAL CARCINOMA, ISOFORM CRA_A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DCC, RCG_46581; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HIGH-FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMELBAC KEYWDS NETRIN-1 RECEPTOR, IMMUNOGLOBULIN SUPERFAMILY, HORSESHOE, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR Q.CHEN,J.-H.LIU,J.-H.WANG REVDAT 4 29-JUL-20 3LAF 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 01-NOV-17 3LAF 1 REMARK REVDAT 2 13-AUG-14 3LAF 1 JRNL VERSN REVDAT 1 02-MAR-11 3LAF 0 JRNL AUTH Q.CHEN,X.SUN,X.H.ZHOU,J.H.LIU,J.WU,Y.ZHANG,J.H.WANG JRNL TITL N-TERMINAL HORSESHOE CONFORMATION OF DCC IS FUNCTIONALLY JRNL TITL 2 REQUIRED FOR AXON GUIDANCE AND MIGHT BE SHARED BY OTHER JRNL TITL 3 NEURAL RECEPTORS. JRNL REF J.CELL.SCI. V. 126 186 2013 JRNL REFN ISSN 0021-9533 JRNL PMID 23038776 JRNL DOI 10.1242/JCS.111278 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 166 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.67200 REMARK 3 B22 (A**2) : 8.67200 REMARK 3 B33 (A**2) : -17.34300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.228 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.718 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.546 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.159 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 47.58 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LAF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-08; 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 24-ID-C; 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0720; 0.9794 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) DOUBLE REMARK 200 CRYSTAL.; ROSENBAUM-ROCK HIGH- REMARK 200 RESOLUTION DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : CRYOGENICALLY-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR. REMARK 200 TRIPLE STRIPED VERTICAL AND REMARK 200 HORIZANTAL FOCUSSING MIRRORS IN REMARK 200 KIRKPATRICK-BAEZ GEOMETRY.; REMARK 200 ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR. REMARK 200 LN2 COOLED FIRST CRYSTAL, REMARK 200 SAGITTAL FOCUSING 2ND CRYSTAL, REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR, BEAM DEFINING SLITS REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : 0.89000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.29467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.14733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.72100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 21.57367 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.86833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A -19 REMARK 465 ARG A -18 REMARK 465 TRP A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 GLU A -14 REMARK 465 LEU A -13 REMARK 465 GLU A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 ALA A 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 2 115.35 -32.74 REMARK 500 SER A 67 -172.03 -173.43 REMARK 500 LYS A 71 71.01 -163.33 REMARK 500 ASP A 148 144.77 -171.61 REMARK 500 ARG A 163 55.59 36.45 REMARK 500 LEU A 164 125.55 -36.07 REMARK 500 GLU A 239 -8.30 -141.82 REMARK 500 ARG A 245 15.69 54.57 REMARK 500 SER A 255 -28.37 -145.58 REMARK 500 ASN A 261 74.47 37.89 REMARK 500 LYS A 277 -103.51 57.74 REMARK 500 SER A 307 -3.22 78.55 REMARK 500 SER A 336 -156.53 -158.76 REMARK 500 SER A 345 18.53 -143.61 REMARK 500 REMARK 500 REMARK: NULL DBREF 3LAF A 1 383 UNP Q63155 Q63155_RAT 39 421 SEQADV 3LAF ASP A -19 UNP Q63155 EXPRESSION TAG SEQADV 3LAF ARG A -18 UNP Q63155 EXPRESSION TAG SEQADV 3LAF TRP A -17 UNP Q63155 EXPRESSION TAG SEQADV 3LAF GLY A -16 UNP Q63155 EXPRESSION TAG SEQADV 3LAF SER A -15 UNP Q63155 EXPRESSION TAG SEQADV 3LAF GLU A -14 UNP Q63155 EXPRESSION TAG SEQADV 3LAF LEU A -13 UNP Q63155 EXPRESSION TAG SEQADV 3LAF GLU A -12 UNP Q63155 EXPRESSION TAG SEQADV 3LAF SER A -11 UNP Q63155 EXPRESSION TAG SEQADV 3LAF SER A -10 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -9 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -8 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -7 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -6 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -5 UNP Q63155 EXPRESSION TAG SEQADV 3LAF HIS A -4 UNP Q63155 EXPRESSION TAG SEQADV 3LAF GLY A -3 UNP Q63155 EXPRESSION TAG SEQADV 3LAF GLY A -2 UNP Q63155 EXPRESSION TAG SEQADV 3LAF ARG A -1 UNP Q63155 EXPRESSION TAG SEQADV 3LAF ARG A 0 UNP Q63155 EXPRESSION TAG SEQRES 1 A 403 ASP ARG TRP GLY SER GLU LEU GLU SER SER HIS HIS HIS SEQRES 2 A 403 HIS HIS HIS GLY GLY ARG ARG SER LEU HIS PHE VAL SER SEQRES 3 A 403 GLU PRO SER ASP ALA VAL THR MET ARG GLY GLY ASN VAL SEQRES 4 A 403 LEU LEU ASN CYS SER ALA GLU SER ASP ARG GLY VAL PRO SEQRES 5 A 403 VAL ILE LYS TRP LYS LYS ASP GLY LEU ILE LEU ALA LEU SEQRES 6 A 403 GLY MET ASP ASP ARG LYS GLN GLN LEU PRO ASN GLY SER SEQRES 7 A 403 LEU LEU ILE GLN ASN ILE LEU HIS SER ARG HIS HIS LYS SEQRES 8 A 403 PRO ASP GLU GLY LEU TYR GLN CYS GLU ALA SER LEU GLY SEQRES 9 A 403 ASP SER GLY SER ILE ILE SER ARG THR ALA LYS VAL MET SEQRES 10 A 403 VAL ALA GLY PRO LEU ARG PHE LEU SER GLN THR GLU SER SEQRES 11 A 403 ILE THR ALA PHE MET GLY ASP THR VAL LEU LEU LYS CYS SEQRES 12 A 403 GLU VAL ILE GLY ASP PRO MET PRO THR ILE HIS TRP GLN SEQRES 13 A 403 LYS ASN GLN GLN ASP LEU ASN PRO ILE PRO GLY ASP SER SEQRES 14 A 403 ARG VAL VAL VAL LEU PRO SER GLY ALA LEU GLN ILE SER SEQRES 15 A 403 ARG LEU GLN PRO GLY ASP SER GLY VAL TYR ARG CYS SER SEQRES 16 A 403 ALA ARG ASN PRO ALA SER THR ARG THR GLY ASN GLU ALA SEQRES 17 A 403 GLU VAL ARG ILE LEU SER ASP PRO GLY LEU HIS ARG GLN SEQRES 18 A 403 LEU TYR PHE LEU GLN ARG PRO SER ASN VAL ILE ALA ILE SEQRES 19 A 403 GLU GLY LYS ASP ALA VAL LEU GLU CYS CYS VAL SER GLY SEQRES 20 A 403 TYR PRO PRO PRO SER PHE THR TRP LEU ARG GLY GLU GLU SEQRES 21 A 403 VAL ILE GLN LEU ARG SER LYS LYS TYR SER LEU LEU GLY SEQRES 22 A 403 GLY SER ASN LEU LEU ILE SER ASN VAL THR ASP ASP ASP SEQRES 23 A 403 SER GLY THR TYR THR CYS VAL VAL THR TYR LYS ASN GLU SEQRES 24 A 403 ASN ILE SER ALA SER ALA GLU LEU THR VAL LEU VAL PRO SEQRES 25 A 403 PRO TRP PHE LEU ASN HIS PRO SER ASN LEU TYR ALA TYR SEQRES 26 A 403 GLU SER MET ASP ILE GLU PHE GLU CYS ALA VAL SER GLY SEQRES 27 A 403 LYS PRO VAL PRO THR VAL ASN TRP MET LYS ASN GLY ASP SEQRES 28 A 403 VAL VAL ILE PRO SER ASP TYR PHE GLN ILE VAL GLY GLY SEQRES 29 A 403 SER ASN LEU ARG ILE LEU GLY VAL VAL LYS SER ASP GLU SEQRES 30 A 403 GLY PHE TYR GLN CYS VAL ALA GLU ASN GLU ALA GLY ASN SEQRES 31 A 403 ALA GLN SER SER ALA GLN LEU ILE VAL PRO LYS PRO ALA MODRES 3LAF ASN A 56 ASN GLYCOSYLATION SITE MODRES 3LAF ASN A 261 ASN GLYCOSYLATION SITE MODRES 3LAF ASN A 22 ASN GLYCOSYLATION SITE MODRES 3LAF ASN A 280 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG A 407 14 HET NAG A 408 14 HET SO4 A 384 5 HET SO4 A 385 5 HET SO4 A 386 5 HET SO4 A 387 5 HET SO4 A 388 5 HET SO4 A 389 5 HET SO4 A 390 5 HET SO4 A 391 5 HET SO4 A 392 5 HET SO4 A 393 5 HET SO4 A 394 5 HET SO4 A 395 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 2(C6 H12 O6) FORMUL 6 SO4 12(O4 S 2-) FORMUL 18 HOH *218(H2 O) HELIX 1 1 GLY A 84 SER A 86 5 3 HELIX 2 2 GLN A 165 SER A 169 5 5 HELIX 3 3 THR A 263 SER A 267 5 5 HELIX 4 4 VAL A 353 GLU A 357 5 5 SHEET 1 A 2 HIS A 3 SER A 6 0 SHEET 2 A 2 SER A 24 GLU A 26 -1 O SER A 24 N VAL A 5 SHEET 1 B 5 ALA A 11 THR A 13 0 SHEET 2 B 5 ALA A 94 VAL A 98 1 O MET A 97 N THR A 13 SHEET 3 B 5 GLY A 75 SER A 82 -1 N TYR A 77 O ALA A 94 SHEET 4 B 5 VAL A 33 LYS A 38 -1 N LYS A 37 O GLN A 78 SHEET 5 B 5 LEU A 41 ILE A 42 -1 O LEU A 41 N LYS A 38 SHEET 1 C 4 ALA A 11 THR A 13 0 SHEET 2 C 4 ALA A 94 VAL A 98 1 O MET A 97 N THR A 13 SHEET 3 C 4 GLY A 75 SER A 82 -1 N TYR A 77 O ALA A 94 SHEET 4 C 4 SER A 88 ILE A 90 -1 O ILE A 89 N ALA A 81 SHEET 1 D 3 VAL A 19 LEU A 21 0 SHEET 2 D 3 LEU A 59 ILE A 61 -1 O LEU A 59 N LEU A 21 SHEET 3 D 3 LYS A 51 GLN A 53 -1 N GLN A 52 O LEU A 60 SHEET 1 E 2 ARG A 103 PHE A 104 0 SHEET 2 E 2 VAL A 125 ILE A 126 -1 O ILE A 126 N ARG A 103 SHEET 1 F 4 ILE A 111 PHE A 114 0 SHEET 2 F 4 ALA A 188 LEU A 193 1 O GLU A 189 N ILE A 111 SHEET 3 F 4 GLY A 170 ARG A 177 -1 N TYR A 172 O ALA A 188 SHEET 4 F 4 THR A 132 LYS A 137 -1 N HIS A 134 O SER A 175 SHEET 1 G 3 VAL A 119 LEU A 121 0 SHEET 2 G 3 LEU A 159 ILE A 161 -1 O LEU A 159 N LEU A 121 SHEET 3 G 3 VAL A 151 VAL A 153 -1 N VAL A 152 O GLN A 160 SHEET 1 H 2 ARG A 200 GLN A 206 0 SHEET 2 H 2 CYS A 224 TYR A 228 -1 O CYS A 224 N LEU A 205 SHEET 1 I 5 VAL A 211 ILE A 214 0 SHEET 2 I 5 GLU A 279 ASN A 297 1 O LEU A 290 N ALA A 213 SHEET 3 I 5 GLY A 268 TYR A 276 -1 N CYS A 272 O ALA A 283 SHEET 4 I 5 SER A 232 ARG A 237 -1 N LEU A 236 O THR A 271 SHEET 5 I 5 GLU A 240 VAL A 241 -1 O GLU A 240 N ARG A 237 SHEET 1 J 3 VAL A 211 ILE A 214 0 SHEET 2 J 3 GLU A 279 ASN A 297 1 O LEU A 290 N ALA A 213 SHEET 3 J 3 ALA A 315 LYS A 319 -1 O ALA A 315 N LEU A 296 SHEET 1 K 3 ALA A 219 LEU A 221 0 SHEET 2 K 3 ASN A 256 ILE A 259 -1 O ILE A 259 N ALA A 219 SHEET 3 K 3 TYR A 249 LEU A 252 -1 N SER A 250 O LEU A 258 SHEET 1 L 5 LEU A 302 TYR A 303 0 SHEET 2 L 5 GLY A 369 ILE A 378 1 O ILE A 378 N LEU A 302 SHEET 3 L 5 GLY A 358 ASN A 366 -1 N TYR A 360 O ALA A 375 SHEET 4 L 5 THR A 323 LYS A 328 -1 N ASN A 325 O VAL A 363 SHEET 5 L 5 ASP A 331 VAL A 332 -1 O ASP A 331 N LYS A 328 SHEET 1 M 3 ILE A 310 PHE A 312 0 SHEET 2 M 3 ASN A 346 ILE A 349 -1 O LEU A 347 N PHE A 312 SHEET 3 M 3 PHE A 339 VAL A 342 -1 N GLN A 340 O ARG A 348 SSBOND 1 CYS A 23 CYS A 79 1555 1555 2.01 SSBOND 2 CYS A 123 CYS A 174 1555 1555 2.04 SSBOND 3 CYS A 223 CYS A 272 1555 1555 2.05 SSBOND 4 CYS A 314 CYS A 362 1555 1555 2.04 LINK ND2 ASN A 22 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 56 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 261 C1 NAG A 407 1555 1555 1.45 LINK ND2 ASN A 280 C1 NAG A 408 1555 1555 1.49 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.40 CISPEP 1 ASP A 128 PRO A 129 0 0.60 CISPEP 2 TYR A 228 PRO A 229 0 0.45 CISPEP 3 LYS A 319 PRO A 320 0 0.08 CRYST1 109.380 109.380 129.442 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009142 0.005278 0.000000 0.00000 SCALE2 0.000000 0.010557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007725 0.00000