HEADER TRANSFERASE 07-JAN-10 3LB7 OBSLTE 15-SEP-10 3LB7 3OMV TITLE CRYSTAL STRUCTURE OF C-RAF (RAF-1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAF PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 323-618; COMPND 5 SYNONYM: C-RAF, CRAF, RAF-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAF1, RAF; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE DOMAIN, ATP-BINDING, DISEASE MUTATION, KINASE, METAL-BINDING, KEYWDS 2 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, PROTO-ONCOGENE, KEYWDS 3 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR G.VIGERS,T.MORALES,B.J.BRANDHUBER REVDAT 3 15-SEP-10 3LB7 1 OBSLTE REVDAT 2 12-MAY-10 3LB7 1 JRNL REVDAT 1 02-FEB-10 3LB7 0 JRNL AUTH G.HATZIVASSILIOU,K.SONG,I.YEN,B.J.BRANDHUBER,D.J.ANDERSON, JRNL AUTH 2 R.ALVARADO,M.J.LUDLAM,D.STOKOE,S.L.GLOOR,G.VIGERS,T.MORALES, JRNL AUTH 3 I.ALIAGAS,B.LIU,S.SIDERIS,K.P.HOEFLICH,B.S.JAISWAL, JRNL AUTH 4 S.SESHAGIRI,H.KOEPPEN,M.BELVIN,L.S.FRIEDMAN,S.MALEK JRNL TITL RAF INHIBITORS PRIME WILD-TYPE RAF TO ACTIVATE THE MAPK JRNL TITL 2 PATHWAY AND ENHANCE GROWTH. JRNL REF NATURE V. 464 431 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20130576 JRNL DOI 10.1038/NATURE08833 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.294 REMARK 3 R VALUE (WORKING SET) : 0.290 REMARK 3 FREE R VALUE : 0.372 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 27 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.929 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 69.694 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.837 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.651 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4362 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5892 ; 1.063 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 524 ; 5.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;35.923 ;23.980 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 790 ;19.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;11.597 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3242 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 340 A 615 1 REMARK 3 1 B 340 B 615 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2131 ; 0.450 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LB7 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB057062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7305 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 13.800 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : 0.16700 REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31100 REMARK 200 R SYM FOR SHELL (I) : 0.31100 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 3D4Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 8K, 100 MM TRIS PH 8.0, 10% REMARK 280 TACSIMATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.71100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.78500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.35550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.06650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.78500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 40.35550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.78500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 121.06650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 80.71100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 312 REMARK 465 ASP A 313 REMARK 465 ARG A 314 REMARK 465 GLY A 315 REMARK 465 SER A 316 REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 465 GLY A 323 REMARK 465 THR A 324 REMARK 465 GLN A 325 REMARK 465 GLU A 326 REMARK 465 LYS A 327 REMARK 465 ASN A 328 REMARK 465 LYS A 329 REMARK 465 ILE A 330 REMARK 465 ARG A 331 REMARK 465 PRO A 332 REMARK 465 ARG A 333 REMARK 465 GLY A 334 REMARK 465 GLN A 335 REMARK 465 ARG A 336 REMARK 465 ASP A 337 REMARK 465 SER A 338 REMARK 465 SER A 339 REMARK 465 LYS A 493 REMARK 465 SER A 494 REMARK 465 ARG A 495 REMARK 465 TRP A 496 REMARK 465 SER A 497 REMARK 465 GLY A 498 REMARK 465 SER A 499 REMARK 465 GLN A 500 REMARK 465 GLN A 501 REMARK 465 VAL A 502 REMARK 465 GLU A 503 REMARK 465 GLN A 504 REMARK 465 ILE A 616 REMARK 465 ASN A 617 REMARK 465 ARG A 618 REMARK 465 MET B 312 REMARK 465 ASP B 313 REMARK 465 ARG B 314 REMARK 465 GLY B 315 REMARK 465 SER B 316 REMARK 465 HIS B 317 REMARK 465 HIS B 318 REMARK 465 HIS B 319 REMARK 465 HIS B 320 REMARK 465 HIS B 321 REMARK 465 HIS B 322 REMARK 465 GLY B 323 REMARK 465 THR B 324 REMARK 465 GLN B 325 REMARK 465 GLU B 326 REMARK 465 LYS B 327 REMARK 465 ASN B 328 REMARK 465 LYS B 329 REMARK 465 ILE B 330 REMARK 465 ARG B 331 REMARK 465 PRO B 332 REMARK 465 ARG B 333 REMARK 465 GLY B 334 REMARK 465 GLN B 335 REMARK 465 ARG B 336 REMARK 465 ASP B 337 REMARK 465 SER B 338 REMARK 465 SER B 339 REMARK 465 LYS B 493 REMARK 465 SER B 494 REMARK 465 ARG B 495 REMARK 465 TRP B 496 REMARK 465 SER B 497 REMARK 465 GLY B 498 REMARK 465 SER B 499 REMARK 465 GLN B 500 REMARK 465 GLN B 501 REMARK 465 VAL B 502 REMARK 465 GLU B 503 REMARK 465 GLN B 504 REMARK 465 ILE B 616 REMARK 465 ASN B 617 REMARK 465 ARG B 618 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 342 28.48 -73.69 REMARK 500 SER A 347 -3.92 77.31 REMARK 500 SER A 352 -142.66 -86.34 REMARK 500 TRP A 368 104.80 -176.55 REMARK 500 LYS A 378 -28.50 73.28 REMARK 500 LEU A 407 96.04 -55.27 REMARK 500 ASP A 415 78.78 60.34 REMARK 500 ASN A 416 159.73 68.64 REMARK 500 LYS A 462 43.17 -85.54 REMARK 500 ASN A 463 -25.19 76.38 REMARK 500 ARG A 467 -69.13 77.16 REMARK 500 GLU A 478 -88.84 72.33 REMARK 500 THR A 481 108.14 57.77 REMARK 500 ASP A 486 4.38 -64.01 REMARK 500 PHE A 487 82.80 -19.83 REMARK 500 SER A 508 56.22 -101.67 REMARK 500 LEU A 510 -44.34 118.12 REMARK 500 TRP A 511 58.59 -105.31 REMARK 500 MET A 519 146.52 72.31 REMARK 500 GLN A 520 -46.96 -149.49 REMARK 500 ASP A 521 36.62 -160.17 REMARK 500 ASN A 522 -14.41 61.59 REMARK 500 HIS A 550 54.77 -118.05 REMARK 500 ASN A 552 66.72 -160.38 REMARK 500 ASN A 553 79.73 -151.99 REMARK 500 LYS A 593 -76.53 -59.08 REMARK 500 HIS A 611 42.15 -94.58 REMARK 500 PRO A 614 -34.52 -30.70 REMARK 500 TRP B 342 32.88 -92.74 REMARK 500 ALA B 346 123.69 -31.50 REMARK 500 SER B 352 -154.71 -88.17 REMARK 500 SER B 359 -62.37 -97.37 REMARK 500 TRP B 368 102.17 -168.02 REMARK 500 ASN B 416 170.29 65.50 REMARK 500 LYS B 462 34.97 -93.65 REMARK 500 ASN B 463 -7.06 70.21 REMARK 500 ARG B 467 -93.38 68.55 REMARK 500 MET B 469 -124.10 49.59 REMARK 500 LYS B 470 166.48 86.60 REMARK 500 LEU B 480 -27.79 -152.46 REMARK 500 PHE B 487 93.71 5.96 REMARK 500 LEU B 510 -60.82 155.66 REMARK 500 TRP B 511 40.90 -82.85 REMARK 500 MET B 519 123.23 81.25 REMARK 500 GLN B 520 -73.60 -124.09 REMARK 500 ASP B 521 37.31 -146.35 REMARK 500 ASN B 522 -14.71 71.62 REMARK 500 TYR B 548 50.73 39.47 REMARK 500 ILE B 551 -140.94 -144.32 REMARK 500 ASN B 552 11.00 -176.27 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 3LB7 A 323 618 UNP P04049 RAF1_HUMAN 323 618 DBREF 3LB7 B 323 618 UNP P04049 RAF1_HUMAN 323 618 SEQADV 3LB7 MET A 312 UNP P04049 EXPRESSION TAG SEQADV 3LB7 ASP A 313 UNP P04049 EXPRESSION TAG SEQADV 3LB7 ARG A 314 UNP P04049 EXPRESSION TAG SEQADV 3LB7 GLY A 315 UNP P04049 EXPRESSION TAG SEQADV 3LB7 SER A 316 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 317 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 318 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 319 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 320 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 321 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS A 322 UNP P04049 EXPRESSION TAG SEQADV 3LB7 MET B 312 UNP P04049 EXPRESSION TAG SEQADV 3LB7 ASP B 313 UNP P04049 EXPRESSION TAG SEQADV 3LB7 ARG B 314 UNP P04049 EXPRESSION TAG SEQADV 3LB7 GLY B 315 UNP P04049 EXPRESSION TAG SEQADV 3LB7 SER B 316 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 317 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 318 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 319 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 320 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 321 UNP P04049 EXPRESSION TAG SEQADV 3LB7 HIS B 322 UNP P04049 EXPRESSION TAG SEQRES 1 A 307 MET ASP ARG GLY SER HIS HIS HIS HIS HIS HIS GLY THR SEQRES 2 A 307 GLN GLU LYS ASN LYS ILE ARG PRO ARG GLY GLN ARG ASP SEQRES 3 A 307 SER SER TYR TYR TRP GLU ILE GLU ALA SER GLU VAL MET SEQRES 4 A 307 LEU SER THR ARG ILE GLY SER GLY SER PHE GLY THR VAL SEQRES 5 A 307 TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS ILE SEQRES 6 A 307 LEU LYS VAL VAL ASP PRO THR PRO GLU GLN PHE GLN ALA SEQRES 7 A 307 PHE ARG ASN GLU VAL ALA VAL LEU ARG LYS THR ARG HIS SEQRES 8 A 307 VAL ASN ILE LEU LEU PHE MET GLY TYR MET THR LYS ASP SEQRES 9 A 307 ASN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER SEQRES 10 A 307 LEU TYR LYS HIS LEU HIS VAL GLN GLU THR LYS PHE GLN SEQRES 11 A 307 MET PHE GLN LEU ILE ASP ILE ALA ARG GLN THR ALA GLN SEQRES 12 A 307 GLY MET ASP TYR LEU HIS ALA LYS ASN ILE ILE HIS ARG SEQRES 13 A 307 ASP MET LYS SER ASN ASN ILE PHE LEU HIS GLU GLY LEU SEQRES 14 A 307 THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SEQRES 15 A 307 SER ARG TRP SER GLY SER GLN GLN VAL GLU GLN PRO THR SEQRES 16 A 307 GLY SER VAL LEU TRP MET ALA PRO GLU VAL ILE ARG MET SEQRES 17 A 307 GLN ASP ASN ASN PRO PHE SER PHE GLN SER ASP VAL TYR SEQRES 18 A 307 SER TYR GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLU SEQRES 19 A 307 LEU PRO TYR SER HIS ILE ASN ASN ARG ASP GLN ILE ILE SEQRES 20 A 307 PHE MET VAL GLY ARG GLY TYR ALA SER PRO ASP LEU SER SEQRES 21 A 307 LYS LEU TYR LYS ASN CYS PRO LYS ALA MET LYS ARG LEU SEQRES 22 A 307 VAL ALA ASP CYS VAL LYS LYS VAL LYS GLU GLU ARG PRO SEQRES 23 A 307 LEU PHE PRO GLN ILE LEU SER SER ILE GLU LEU LEU GLN SEQRES 24 A 307 HIS SER LEU PRO LYS ILE ASN ARG SEQRES 1 B 307 MET ASP ARG GLY SER HIS HIS HIS HIS HIS HIS GLY THR SEQRES 2 B 307 GLN GLU LYS ASN LYS ILE ARG PRO ARG GLY GLN ARG ASP SEQRES 3 B 307 SER SER TYR TYR TRP GLU ILE GLU ALA SER GLU VAL MET SEQRES 4 B 307 LEU SER THR ARG ILE GLY SER GLY SER PHE GLY THR VAL SEQRES 5 B 307 TYR LYS GLY LYS TRP HIS GLY ASP VAL ALA VAL LYS ILE SEQRES 6 B 307 LEU LYS VAL VAL ASP PRO THR PRO GLU GLN PHE GLN ALA SEQRES 7 B 307 PHE ARG ASN GLU VAL ALA VAL LEU ARG LYS THR ARG HIS SEQRES 8 B 307 VAL ASN ILE LEU LEU PHE MET GLY TYR MET THR LYS ASP SEQRES 9 B 307 ASN LEU ALA ILE VAL THR GLN TRP CYS GLU GLY SER SER SEQRES 10 B 307 LEU TYR LYS HIS LEU HIS VAL GLN GLU THR LYS PHE GLN SEQRES 11 B 307 MET PHE GLN LEU ILE ASP ILE ALA ARG GLN THR ALA GLN SEQRES 12 B 307 GLY MET ASP TYR LEU HIS ALA LYS ASN ILE ILE HIS ARG SEQRES 13 B 307 ASP MET LYS SER ASN ASN ILE PHE LEU HIS GLU GLY LEU SEQRES 14 B 307 THR VAL LYS ILE GLY ASP PHE GLY LEU ALA THR VAL LYS SEQRES 15 B 307 SER ARG TRP SER GLY SER GLN GLN VAL GLU GLN PRO THR SEQRES 16 B 307 GLY SER VAL LEU TRP MET ALA PRO GLU VAL ILE ARG MET SEQRES 17 B 307 GLN ASP ASN ASN PRO PHE SER PHE GLN SER ASP VAL TYR SEQRES 18 B 307 SER TYR GLY ILE VAL LEU TYR GLU LEU MET THR GLY GLU SEQRES 19 B 307 LEU PRO TYR SER HIS ILE ASN ASN ARG ASP GLN ILE ILE SEQRES 20 B 307 PHE MET VAL GLY ARG GLY TYR ALA SER PRO ASP LEU SER SEQRES 21 B 307 LYS LEU TYR LYS ASN CYS PRO LYS ALA MET LYS ARG LEU SEQRES 22 B 307 VAL ALA ASP CYS VAL LYS LYS VAL LYS GLU GLU ARG PRO SEQRES 23 B 307 LEU PHE PRO GLN ILE LEU SER SER ILE GLU LEU LEU GLN SEQRES 24 B 307 HIS SER LEU PRO LYS ILE ASN ARG HELIX 1 1 THR A 383 ARG A 398 1 16 HELIX 2 2 SER A 428 VAL A 435 1 8 HELIX 3 3 GLN A 441 LYS A 462 1 22 HELIX 4 4 ALA A 513 MET A 519 1 7 HELIX 5 5 SER A 526 GLY A 544 1 19 HELIX 6 6 ASN A 553 ARG A 563 1 11 HELIX 7 7 PRO A 578 VAL A 589 1 12 HELIX 8 8 LEU A 598 HIS A 611 1 14 HELIX 9 9 THR B 383 ARG B 398 1 16 HELIX 10 10 SER B 428 VAL B 435 1 8 HELIX 11 11 GLN B 441 LYS B 462 1 22 HELIX 12 12 ALA B 513 MET B 519 1 7 HELIX 13 13 SER B 526 GLY B 544 1 19 HELIX 14 14 ASN B 553 GLY B 562 1 10 HELIX 15 15 PRO B 578 LYS B 590 1 13 HELIX 16 16 LEU B 598 LEU B 608 1 11 SHEET 1 A 5 LEU A 351 SER A 357 0 SHEET 2 A 5 THR A 362 LYS A 367 -1 O VAL A 363 N ILE A 355 SHEET 3 A 5 ASP A 371 ILE A 376 -1 O VAL A 374 N TYR A 364 SHEET 4 A 5 ALA A 418 GLN A 422 -1 O ILE A 419 N LYS A 375 SHEET 5 A 5 PHE A 408 MET A 412 -1 N GLY A 410 O VAL A 420 SHEET 1 B 2 ILE A 474 LEU A 476 0 SHEET 2 B 2 VAL A 482 ILE A 484 -1 O LYS A 483 N PHE A 475 SHEET 1 C 5 ARG B 354 SER B 357 0 SHEET 2 C 5 THR B 362 LYS B 367 -1 O VAL B 363 N ILE B 355 SHEET 3 C 5 ASP B 371 ILE B 376 -1 O VAL B 372 N GLY B 366 SHEET 4 C 5 ALA B 418 GLN B 422 -1 O THR B 421 N ALA B 373 SHEET 5 C 5 PHE B 408 MET B 412 -1 N GLY B 410 O VAL B 420 SHEET 1 D 2 ILE B 474 HIS B 477 0 SHEET 2 D 2 THR B 481 ILE B 484 -1 O THR B 481 N HIS B 477 CRYST1 99.570 99.570 161.422 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010043 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010043 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006195 0.00000