HEADER LIGASE 08-JAN-10 3LC0 TITLE HISTIDYL-TRNA SYNTHETASE FROM TRYPANOSOMA CRUZI (HISTIDINE COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-478; COMPND 5 EC: 6.1.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 GENE: TC00.1047053507019.40; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS TRNA-LIGASE, AMINOACYL-TRNA SYNTHETASE, LIGASE, STRUCTURAL GENOMICS, KEYWDS 2 MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP EXPDTA X-RAY DIFFRACTION AUTHOR E.A.MERRITT,E.T.LARSON,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 5 21-FEB-24 3LC0 1 REMARK SEQADV REVDAT 4 01-NOV-17 3LC0 1 REMARK REVDAT 3 13-JUL-11 3LC0 1 VERSN REVDAT 2 23-MAR-10 3LC0 1 JRNL REVDAT 1 19-JAN-10 3LC0 0 SPRSDE 19-JAN-10 3LC0 3HRJ JRNL AUTH E.A.MERRITT,T.L.ARAKAKI,J.R.GILLESPIE,E.T.LARSON,A.KELLEY, JRNL AUTH 2 N.MUELLER,A.J.NAPULI,J.KIM,L.ZHANG,C.L.VERLINDE,E.FAN, JRNL AUTH 3 F.ZUCKER,F.S.BUCKNER,W.C.VAN VOORHIS,W.G.HOL JRNL TITL CRYSTAL STRUCTURES OF TRYPANOSOMAL HISTIDYL-TRNA SYNTHETASE JRNL TITL 2 ILLUMINATE DIFFERENCES BETWEEN EUKARYOTIC AND PROKARYOTIC JRNL TITL 3 HOMOLOGS. JRNL REF J.MOL.BIOL. V. 397 481 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20132829 JRNL DOI 10.1016/J.JMB.2010.01.051 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0096 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.038 REMARK 3 FREE R VALUE TEST SET COUNT : 2374 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3295 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3248 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.67100 REMARK 3 B22 (A**2) : -0.94800 REMARK 3 B33 (A**2) : 1.15900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.39100 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3384 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4600 ; 1.264 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;35.724 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 572 ;15.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.789 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 515 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2584 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2098 ; 0.611 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3387 ; 1.137 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 1.856 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1207 ; 3.114 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2360 2.3710 -1.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.2234 REMARK 3 T33: 0.2883 T12: 0.0558 REMARK 3 T13: 0.0318 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.4000 L22: 0.4914 REMARK 3 L33: 3.1600 L12: 0.3347 REMARK 3 L13: 0.3390 L23: -0.4025 REMARK 3 S TENSOR REMARK 3 S11: -0.0273 S12: -0.0024 S13: -0.0757 REMARK 3 S21: -0.0017 S22: -0.0836 S23: -0.1184 REMARK 3 S31: 0.3591 S32: 0.3781 S33: 0.1109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 0.7450 -15.8220 -14.5830 REMARK 3 T TENSOR REMARK 3 T11: 0.4705 T22: 0.0798 REMARK 3 T33: 0.4717 T12: -0.0323 REMARK 3 T13: 0.0402 T23: -0.1097 REMARK 3 L TENSOR REMARK 3 L11: 0.3375 L22: 1.9619 REMARK 3 L33: 5.0857 L12: -2.0838 REMARK 3 L13: -2.3881 L23: 3.0303 REMARK 3 S TENSOR REMARK 3 S11: -0.0567 S12: 0.1133 S13: -0.4479 REMARK 3 S21: 0.1678 S22: -0.1461 S23: 0.3381 REMARK 3 S31: 0.4198 S32: -0.0291 S33: 0.2028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8000 -1.6050 -13.2290 REMARK 3 T TENSOR REMARK 3 T11: 0.2735 T22: 0.1787 REMARK 3 T33: 0.2765 T12: -0.0120 REMARK 3 T13: 0.0292 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9256 L22: 1.5130 REMARK 3 L33: 2.6437 L12: -0.0136 REMARK 3 L13: -0.1043 L23: -0.0578 REMARK 3 S TENSOR REMARK 3 S11: -0.0456 S12: 0.0331 S13: -0.1377 REMARK 3 S21: 0.0621 S22: -0.0086 S23: 0.0985 REMARK 3 S31: 0.4648 S32: -0.0260 S33: 0.0542 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 237 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2280 -4.4820 -30.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.2638 T22: 0.2691 REMARK 3 T33: 0.2298 T12: 0.0029 REMARK 3 T13: 0.0517 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 1.1032 L22: 1.1774 REMARK 3 L33: 2.3990 L12: -0.4280 REMARK 3 L13: -0.5117 L23: 0.1129 REMARK 3 S TENSOR REMARK 3 S11: -0.1189 S12: 0.2884 S13: -0.2892 REMARK 3 S21: -0.3756 S22: -0.1064 S23: 0.1113 REMARK 3 S31: 0.4494 S32: -0.0450 S33: 0.2253 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 286 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1910 -9.3150 -37.2550 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.3494 REMARK 3 T33: 0.2098 T12: -0.0530 REMARK 3 T13: 0.2825 T23: -0.3010 REMARK 3 L TENSOR REMARK 3 L11: 7.6067 L22: 18.9347 REMARK 3 L33: 2.8033 L12: -0.0449 REMARK 3 L13: -1.3792 L23: -4.8515 REMARK 3 S TENSOR REMARK 3 S11: -0.4391 S12: 1.5260 S13: -0.9803 REMARK 3 S21: -1.3064 S22: 0.1589 S23: -1.5799 REMARK 3 S31: 0.2128 S32: -0.1789 S33: 0.2802 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 287 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8690 3.3650 -22.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2457 REMARK 3 T33: 0.2557 T12: 0.0093 REMARK 3 T13: 0.0280 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.5084 L22: 1.1241 REMARK 3 L33: 1.7261 L12: 0.3761 REMARK 3 L13: -0.1580 L23: 0.2292 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.1045 S13: -0.0443 REMARK 3 S21: -0.1057 S22: -0.0034 S23: 0.0035 REMARK 3 S31: 0.1528 S32: 0.1953 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 380 A 455 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0760 22.3520 23.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.2181 T22: 0.1989 REMARK 3 T33: 0.2693 T12: 0.0009 REMARK 3 T13: -0.0609 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 2.6315 L22: 2.2882 REMARK 3 L33: 2.8811 L12: 0.4517 REMARK 3 L13: -0.2207 L23: -0.4872 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.1844 S13: 0.1683 REMARK 3 S21: 0.1927 S22: -0.0669 S23: -0.1750 REMARK 3 S31: -0.2496 S32: 0.2042 S33: 0.0514 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 468 A 477 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6960 34.2810 22.4530 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.0635 REMARK 3 T33: 0.8287 T12: -0.0191 REMARK 3 T13: -0.0422 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 11.3453 L22: 9.0982 REMARK 3 L33: 17.3609 L12: -8.0867 REMARK 3 L13: 9.4100 L23: 2.8620 REMARK 3 S TENSOR REMARK 3 S11: -0.6908 S12: 0.5614 S13: 1.9818 REMARK 3 S21: 0.4241 S22: 0.2534 S23: -0.2198 REMARK 3 S31: -0.4102 S32: 0.5736 S33: 0.4374 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057090. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.780 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0065 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.75 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PREVIOUS ISOMORPHOUS REMARK 200 STRUCTURE REMARK 200 SOFTWARE USED: PREVIOUS ISOMORPHOUS STRUCTURE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 26% PEG 3350, REMARK 280 0.1 M BIS/TRIS PH 5.5, 1MM TCEP, 10 MM L-HISTIDINE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ALA A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 LEU A -10 REMARK 465 GLU A -9 REMARK 465 ALA A -8 REMARK 465 GLN A -7 REMARK 465 THR A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLN A 45 REMARK 465 LYS A 46 REMARK 465 ILE A 160 REMARK 465 THR A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 456 REMARK 465 GLU A 457 REMARK 465 GLY A 458 REMARK 465 THR A 459 REMARK 465 GLY A 460 REMARK 465 LYS A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 GLY A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 GLU A 467 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 47 CG OD1 ND2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 140 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 203 CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 468 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE3 TRP A 193 O HOH A 611 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB SER A 182 O HOH A 571 2555 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 55 -71.50 -25.99 REMARK 500 GLN A 109 41.45 -97.12 REMARK 500 THR A 115 -71.22 -71.48 REMARK 500 LYS A 116 -97.08 147.84 REMARK 500 HIS A 119 -163.37 -166.99 REMARK 500 ARG A 314 163.71 72.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HIS A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HRI RELATED DB: PDB REMARK 900 RELATED ID: 3HRK RELATED DB: PDB DBREF 3LC0 A 45 478 UNP Q4DA54 Q4DA54_TRYCR 45 478 SEQADV 3LC0 MET A -21 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 ALA A -20 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -19 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -18 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -17 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -16 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -15 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 HIS A -14 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 MET A -13 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLY A -12 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 THR A -11 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 LEU A -10 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLU A -9 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 ALA A -8 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLN A -7 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 THR A -6 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLN A -5 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLY A -4 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 PRO A -3 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 GLY A -2 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 SER A -1 UNP Q4DA54 EXPRESSION TAG SEQADV 3LC0 MET A 0 UNP Q4DA54 EXPRESSION TAG SEQRES 1 A 456 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 456 ALA GLN THR GLN GLY PRO GLY SER MET GLN LYS ASN MET SEQRES 3 A 456 VAL GLU THR GLU PRO VAL GLN GLY CYS ARG ASP PHE PRO SEQRES 4 A 456 PRO GLU ALA MET ARG CYS ARG ARG HIS LEU PHE ASP VAL SEQRES 5 A 456 PHE HIS ALA THR ALA LYS THR PHE GLY PHE GLU GLU TYR SEQRES 6 A 456 ASP ALA PRO VAL LEU GLU SER GLU GLU LEU TYR ILE ARG SEQRES 7 A 456 LYS ALA GLY GLU GLU ILE THR GLU GLN MET PHE ASN PHE SEQRES 8 A 456 ILE THR LYS GLY GLY HIS ARG VAL ALA LEU ARG PRO GLU SEQRES 9 A 456 MET THR PRO SER LEU ALA ARG LEU LEU LEU GLY LYS GLY SEQRES 10 A 456 ARG SER LEU LEU LEU PRO ALA LYS TRP TYR SER ILE PRO SEQRES 11 A 456 GLN CYS TRP ARG TYR GLU ALA ILE THR ARG GLY ARG ARG SEQRES 12 A 456 ARG GLU HIS TYR GLN TRP ASN MET ASP ILE VAL GLY VAL SEQRES 13 A 456 LYS SER VAL SER ALA GLU VAL GLU LEU VAL CYS ALA ALA SEQRES 14 A 456 CYS TRP ALA MET ARG SER LEU GLY LEU SER SER LYS ASP SEQRES 15 A 456 VAL GLY ILE LYS VAL ASN SER ARG LYS VAL LEU GLN THR SEQRES 16 A 456 VAL VAL GLU GLN ALA GLY VAL THR SER ASP LYS PHE ALA SEQRES 17 A 456 PRO VAL CYS VAL ILE VAL ASP LYS MET GLU LYS ILE PRO SEQRES 18 A 456 ARG GLU GLU VAL GLU ALA GLN LEU ALA VAL LEU GLY LEU SEQRES 19 A 456 GLU PRO THR VAL VAL ASP ALA ILE THR THR THR LEU SER SEQRES 20 A 456 LEU LYS SER ILE ASP GLU ILE ALA GLN ARG VAL GLY GLU SEQRES 21 A 456 GLU HIS GLU ALA VAL LYS GLU LEU ARG GLN PHE PHE GLU SEQRES 22 A 456 GLN VAL GLU ALA TYR GLY TYR GLY ASP TRP VAL LEU PHE SEQRES 23 A 456 ASP ALA SER VAL VAL ARG GLY LEU ALA TYR TYR THR GLY SEQRES 24 A 456 ILE VAL PHE GLU GLY PHE ASP ARG GLU GLY LYS PHE ARG SEQRES 25 A 456 ALA LEU CYS GLY GLY GLY ARG TYR ASP ASN LEU LEU THR SEQRES 26 A 456 THR TYR GLY SER PRO THR PRO ILE PRO CYS ALA GLY PHE SEQRES 27 A 456 GLY PHE GLY ASP CYS VAL ILE VAL GLU LEU LEU GLN GLU SEQRES 28 A 456 LYS ARG LEU LEU PRO ASP ILE PRO HIS VAL VAL ASP ASP SEQRES 29 A 456 VAL VAL ILE PRO PHE ASP GLU SER MET ARG PRO HIS ALA SEQRES 30 A 456 LEU ALA VAL LEU ARG ARG LEU ARG ASP ALA GLY ARG SER SEQRES 31 A 456 ALA ASP ILE ILE LEU ASP LYS LYS LYS VAL VAL GLN ALA SEQRES 32 A 456 PHE ASN TYR ALA ASP ARG VAL GLY ALA VAL ARG ALA VAL SEQRES 33 A 456 LEU VAL ALA PRO GLU GLU TRP GLU ARG GLY GLU VAL GLN SEQRES 34 A 456 VAL LYS MET LEU ARG GLU GLY THR GLY LYS GLU GLU GLY SEQRES 35 A 456 GLY ALA GLU ARG GLY PHE ALA VAL PRO LEU ASP ARG LEU SEQRES 36 A 456 VAL HET HIS A 501 11 HETNAM HIS HISTIDINE FORMUL 2 HIS C6 H10 N3 O2 1+ FORMUL 3 HOH *178(H2 O) HELIX 1 1 PRO A 61 PHE A 82 1 22 HELIX 2 2 GLU A 96 ILE A 99 5 4 HELIX 3 3 GLU A 104 GLN A 109 1 6 HELIX 4 4 MET A 127 LYS A 138 1 12 HELIX 5 5 VAL A 181 LEU A 198 1 18 HELIX 6 6 ARG A 212 ALA A 222 1 11 HELIX 7 7 THR A 225 ASP A 227 5 3 HELIX 8 8 LYS A 228 ASP A 237 1 10 HELIX 9 9 PRO A 243 LEU A 254 1 12 HELIX 10 10 GLU A 257 SER A 269 1 13 HELIX 11 11 SER A 272 GLY A 281 1 10 HELIX 12 12 HIS A 284 GLY A 301 1 18 HELIX 13 13 TYR A 302 ASP A 304 5 3 HELIX 14 14 ASN A 344 TYR A 349 1 6 HELIX 15 15 CYS A 365 LYS A 374 1 10 HELIX 16 16 ASP A 392 SER A 394 5 3 HELIX 17 17 MET A 395 ALA A 409 1 15 HELIX 18 18 LYS A 421 VAL A 432 1 12 HELIX 19 19 ALA A 441 ARG A 447 1 7 HELIX 20 20 ASP A 475 VAL A 478 5 4 SHEET 1 A 4 GLU A 85 GLU A 86 0 SHEET 2 A 4 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 A 4 GLU A 167 VAL A 176 -1 O VAL A 176 N ALA A 146 SHEET 4 A 4 GLN A 153 TRP A 155 -1 N CYS A 154 O HIS A 168 SHEET 1 B 8 GLU A 85 GLU A 86 0 SHEET 2 B 8 ALA A 146 SER A 150 1 O LYS A 147 N GLU A 85 SHEET 3 B 8 GLU A 167 VAL A 176 -1 O VAL A 176 N ALA A 146 SHEET 4 B 8 CYS A 357 GLY A 363 -1 O ALA A 358 N ILE A 175 SHEET 5 B 8 CYS A 337 ARG A 341 -1 N GLY A 338 O GLY A 361 SHEET 6 B 8 ILE A 322 ASP A 328 -1 N ILE A 322 O ARG A 341 SHEET 7 B 8 VAL A 205 SER A 211 -1 N LYS A 208 O GLU A 325 SHEET 8 B 8 VAL A 306 PHE A 308 1 O LEU A 307 N VAL A 209 SHEET 1 C 3 LEU A 92 SER A 94 0 SHEET 2 C 3 ARG A 120 LEU A 123 -1 O ALA A 122 N GLU A 93 SHEET 3 C 3 PHE A 111 ILE A 114 -1 N PHE A 113 O VAL A 121 SHEET 1 D 5 ALA A 413 ILE A 415 0 SHEET 2 D 5 VAL A 384 PRO A 390 1 N VAL A 388 O ASP A 414 SHEET 3 D 5 ALA A 434 VAL A 440 1 O VAL A 438 N ILE A 389 SHEET 4 D 5 GLU A 449 MET A 454 -1 O GLN A 451 N LEU A 439 SHEET 5 D 5 PHE A 470 PRO A 473 -1 O PHE A 470 N VAL A 452 CISPEP 1 LEU A 144 PRO A 145 0 -0.50 SITE 1 AC1 16 GLU A 126 THR A 128 GLN A 170 ASN A 172 SITE 2 AC1 16 ASP A 174 LEU A 316 TYR A 318 TYR A 319 SITE 3 AC1 16 TYR A 342 GLY A 359 PHE A 360 GLY A 361 SITE 4 AC1 16 HOH A 503 HOH A 507 HOH A 565 HOH A 602 CRYST1 90.030 118.840 65.980 90.00 132.57 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011107 0.000000 0.010203 0.00000 SCALE2 0.000000 0.008415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020580 0.00000