HEADER GENE REGULATION 12-JAN-10 3LCZ TITLE B.LICHENIFORMIS ANTI-TRAP CAN ASSEMBLE INTO TWO TYPES OF DODECAMERIC TITLE 2 PARTICLES WITH THE SAME SYMMETRY BUT INVERTED ORIENTATION OF TRIMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INHIBITOR OF TRAP, REGULATED BY T-BOX (TRP) SEQUENCE RTPA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: YCZA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 279010; SOURCE 4 STRAIN: 5A32; SOURCE 5 ATCC: 14580; SOURCE 6 GENE: BL05022, BLI00308, RTPA, RTPA (YCZA), YCZA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA BL21(DE3) COMPETENT CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS ANTI-TRAP, AT, TRAP, TRYPTOPHAN RNA-BINDING ATTENUATION PROTEIN, KEYWDS 2 TRANSCRIPTION ATTENUATION, ANTITERMINATION, TRANSCRIPTION FACTORS, KEYWDS 3 TRYPTOPHAN BIOSYNTHESIS REGULATION, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.B.SHEVTSOV,Y.CHEN,P.GOLLNICK,A.A.ANTSON REVDAT 4 06-SEP-23 3LCZ 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3LCZ 1 VERSN REVDAT 2 31-MAR-10 3LCZ 1 JRNL REVDAT 1 23-FEB-10 3LCZ 0 JRNL AUTH M.B.SHEVTSOV,Y.CHEN,M.N.ISUPOV,A.LEECH,P.GOLLNICK,A.A.ANTSON JRNL TITL BACILLUS LICHENIFORMIS ANTI-TRAP CAN ASSEMBLE INTO TWO TYPES JRNL TITL 2 OF DODECAMERIC PARTICLES WITH THE SAME SYMMETRY BUT INVERTED JRNL TITL 3 ORIENTATION OF TRIMERS. JRNL REF J.STRUCT.BIOL. V. 170 127 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20138150 JRNL DOI 10.1016/J.JSB.2010.01.013 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0008 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 12301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 46.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.741 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1651 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2228 ; 1.790 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 3.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ;40.842 ;26.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 297 ;12.493 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 7.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 256 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1212 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 861 ; 0.300 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1159 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 113 ; 0.289 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.277 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.143 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1085 ; 2.597 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1721 ; 3.542 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 602 ; 6.101 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 507 ; 7.580 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 9 REMARK 3 RESIDUE RANGE : A 36 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7021 53.2536 -5.0297 REMARK 3 T TENSOR REMARK 3 T11: -0.1738 T22: -0.2893 REMARK 3 T33: -0.1255 T12: 0.0661 REMARK 3 T13: 0.1110 T23: 0.1883 REMARK 3 L TENSOR REMARK 3 L11: 7.3614 L22: 4.9614 REMARK 3 L33: 7.7854 L12: 0.8729 REMARK 3 L13: 2.8558 L23: 2.0580 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: -0.2960 S13: -0.1535 REMARK 3 S21: 0.3419 S22: 0.0088 S23: -0.5899 REMARK 3 S31: -0.3042 S32: -0.0513 S33: -0.1652 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 18.9353 40.1710 -18.9690 REMARK 3 T TENSOR REMARK 3 T11: -0.1576 T22: -0.1291 REMARK 3 T33: 0.0317 T12: 0.0789 REMARK 3 T13: 0.2379 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 9.8395 L22: 9.0353 REMARK 3 L33: 0.3506 L12: -9.2118 REMARK 3 L13: -1.7479 L23: 1.7647 REMARK 3 S TENSOR REMARK 3 S11: 0.1715 S12: 0.3598 S13: -0.4802 REMARK 3 S21: -0.3434 S22: -0.0061 S23: -0.0905 REMARK 3 S31: -0.1040 S32: 0.0086 S33: -0.1654 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 9 REMARK 3 RESIDUE RANGE : B 36 B 53 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0821 48.6509 -0.6028 REMARK 3 T TENSOR REMARK 3 T11: -0.1752 T22: -0.2518 REMARK 3 T33: -0.0839 T12: -0.0126 REMARK 3 T13: 0.0642 T23: 0.2341 REMARK 3 L TENSOR REMARK 3 L11: 9.7015 L22: 6.1026 REMARK 3 L33: 7.2253 L12: -2.8626 REMARK 3 L13: -4.3593 L23: 3.4436 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.4041 S13: 0.0539 REMARK 3 S21: 0.4517 S22: -0.1360 S23: -0.4143 REMARK 3 S31: 0.0552 S32: 0.0494 S33: 0.1322 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 10 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6925 40.3468 15.2369 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.0584 REMARK 3 T33: 0.0812 T12: 0.0437 REMARK 3 T13: 0.1816 T23: 0.1934 REMARK 3 L TENSOR REMARK 3 L11: 4.1207 L22: 10.1113 REMARK 3 L33: 11.7564 L12: -2.5091 REMARK 3 L13: 5.6646 L23: -7.5188 REMARK 3 S TENSOR REMARK 3 S11: 0.3578 S12: -0.4900 S13: -0.2986 REMARK 3 S21: 1.4938 S22: -0.1428 S23: -0.4960 REMARK 3 S31: 0.4233 S32: -0.3045 S33: -0.2150 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 RESIDUE RANGE : C 36 C 53 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0853 55.3370 2.8693 REMARK 3 T TENSOR REMARK 3 T11: -0.1442 T22: -0.1143 REMARK 3 T33: -0.1932 T12: 0.0296 REMARK 3 T13: 0.0248 T23: 0.1808 REMARK 3 L TENSOR REMARK 3 L11: 5.3748 L22: 15.9451 REMARK 3 L33: 9.2023 L12: -0.6244 REMARK 3 L13: -0.4456 L23: -0.6658 REMARK 3 S TENSOR REMARK 3 S11: -0.0618 S12: -0.5626 S13: -0.3529 REMARK 3 S21: 0.3366 S22: -0.2993 S23: -0.8923 REMARK 3 S31: -0.3170 S32: -0.0062 S33: 0.3611 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 35 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2871 66.9737 6.4076 REMARK 3 T TENSOR REMARK 3 T11: 0.4932 T22: 0.2316 REMARK 3 T33: 0.8311 T12: -0.1615 REMARK 3 T13: -0.1360 T23: 0.2063 REMARK 3 L TENSOR REMARK 3 L11: 2.7968 L22: 0.9126 REMARK 3 L33: 5.5609 L12: -1.5976 REMARK 3 L13: -3.9437 L23: 2.2527 REMARK 3 S TENSOR REMARK 3 S11: -0.2639 S12: -0.5951 S13: 0.6928 REMARK 3 S21: -0.9838 S22: 0.6117 S23: -0.5711 REMARK 3 S31: -0.1056 S32: 1.2782 S33: -0.3479 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 9 REMARK 3 RESIDUE RANGE : D 36 D 53 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7447 57.9120 -24.0793 REMARK 3 T TENSOR REMARK 3 T11: -0.1536 T22: -0.1857 REMARK 3 T33: -0.3875 T12: 0.0307 REMARK 3 T13: 0.0812 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 11.1379 L22: 8.0469 REMARK 3 L33: 4.4262 L12: 0.2380 REMARK 3 L13: 3.3508 L23: -1.6220 REMARK 3 S TENSOR REMARK 3 S11: -0.4032 S12: 0.3091 S13: -0.1135 REMARK 3 S21: -0.1413 S22: -0.0777 S23: -0.1854 REMARK 3 S31: -0.1931 S32: -0.3093 S33: 0.4809 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 35 REMARK 3 ORIGIN FOR THE GROUP (A): 20.6017 51.6127 -29.3742 REMARK 3 T TENSOR REMARK 3 T11: -0.1065 T22: 0.2296 REMARK 3 T33: -0.0315 T12: -0.0119 REMARK 3 T13: 0.1133 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 5.6393 L22: 3.3395 REMARK 3 L33: 11.1194 L12: -3.7380 REMARK 3 L13: -6.5653 L23: 2.6211 REMARK 3 S TENSOR REMARK 3 S11: -0.4273 S12: 1.0341 S13: -0.1216 REMARK 3 S21: -0.2214 S22: -0.2665 S23: 0.5041 REMARK 3 S31: 0.5108 S32: 0.0282 S33: 0.6938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LCZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 54.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2BX9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS BUFFER PH 5.5-6.0 AND REMARK 280 23-27 % OF POLY(ETHYLENE) GLYCOL 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.03800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.19885 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.45667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 54.03800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 31.19885 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 16.45667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 54.03800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 31.19885 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.45667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.39771 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.91333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 62.39771 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.91333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 62.39771 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.91333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -174.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 54.03800 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 93.59656 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -54.03800 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 93.59656 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 6 O HOH C 59 1.81 REMARK 500 O HOH B 58 O HOH B 82 1.89 REMARK 500 OD1 ASN A 16 O HOH A 84 2.03 REMARK 500 OD2 ASP C 6 O HOH C 101 2.05 REMARK 500 O HOH A 73 O HOH A 81 2.14 REMARK 500 CD1 ILE A 51 NZ LYS C 48 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 22 131.53 -21.94 REMARK 500 HIS B 52 81.46 78.24 REMARK 500 THR C 11 136.12 -35.13 REMARK 500 CYS C 15 -68.00 -136.05 REMARK 500 ASN C 16 42.00 99.08 REMARK 500 GLU C 21 45.29 -155.45 REMARK 500 GLU C 22 122.68 12.08 REMARK 500 LEU C 30 27.22 47.66 REMARK 500 LEU D 30 56.54 37.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 12 SG REMARK 620 2 CYS A 15 SG 105.7 REMARK 620 3 CYS A 26 SG 115.4 109.8 REMARK 620 4 CYS A 29 SG 112.1 107.1 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 12 SG REMARK 620 2 CYS B 15 SG 120.5 REMARK 620 3 CYS B 26 SG 116.3 104.5 REMARK 620 4 CYS B 29 SG 117.9 98.6 94.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 12 SG REMARK 620 2 CYS C 15 SG 98.2 REMARK 620 3 CYS C 26 SG 136.2 112.1 REMARK 620 4 CYS C 29 SG 103.5 98.9 102.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 54 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 12 SG REMARK 620 2 CYS D 15 SG 106.2 REMARK 620 3 CYS D 26 SG 115.7 108.6 REMARK 620 4 CYS D 29 SG 114.9 103.9 106.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 54 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 54 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 54 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 54 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BX9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF B.SUBTILIS ANTI-TRAP PROTEIN, AN ANTAGONIST OF REMARK 900 TRAP-RNA INTERACTIONS REMARK 900 RELATED ID: 3LD0 RELATED DB: PDB DBREF 3LCZ A 1 53 UNP Q65NU7 Q65NU7_BACLD 1 53 DBREF 3LCZ B 1 53 UNP Q65NU7 Q65NU7_BACLD 1 53 DBREF 3LCZ C 1 53 UNP Q65NU7 Q65NU7_BACLD 1 53 DBREF 3LCZ D 1 53 UNP Q65NU7 Q65NU7_BACLD 1 53 SEQADV 3LCZ LEU A 30 UNP Q65NU7 SER 30 VARIANT SEQADV 3LCZ ILE A 51 UNP Q65NU7 LEU 51 VARIANT SEQADV 3LCZ HIS A 52 UNP Q65NU7 ASN 52 VARIANT SEQADV 3LCZ LEU B 30 UNP Q65NU7 SER 30 VARIANT SEQADV 3LCZ ILE B 51 UNP Q65NU7 LEU 51 VARIANT SEQADV 3LCZ HIS B 52 UNP Q65NU7 ASN 52 VARIANT SEQADV 3LCZ LEU C 30 UNP Q65NU7 SER 30 VARIANT SEQADV 3LCZ ILE C 51 UNP Q65NU7 LEU 51 VARIANT SEQADV 3LCZ HIS C 52 UNP Q65NU7 ASN 52 VARIANT SEQADV 3LCZ LEU D 30 UNP Q65NU7 SER 30 VARIANT SEQADV 3LCZ ILE D 51 UNP Q65NU7 LEU 51 VARIANT SEQADV 3LCZ HIS D 52 UNP Q65NU7 ASN 52 VARIANT SEQRES 1 A 53 MET VAL ILE ALA THR ASP ASP LEU GLU THR THR CYS PRO SEQRES 2 A 53 ASN CYS ASN GLY SER GLY ARG GLU GLU PRO GLU PRO CYS SEQRES 3 A 53 PRO LYS CYS LEU GLY LYS GLY VAL ILE LEU THR ALA GLN SEQRES 4 A 53 GLY SER THR LEU LEU HIS PHE ILE LYS LYS HIS ILE HIS SEQRES 5 A 53 GLU SEQRES 1 B 53 MET VAL ILE ALA THR ASP ASP LEU GLU THR THR CYS PRO SEQRES 2 B 53 ASN CYS ASN GLY SER GLY ARG GLU GLU PRO GLU PRO CYS SEQRES 3 B 53 PRO LYS CYS LEU GLY LYS GLY VAL ILE LEU THR ALA GLN SEQRES 4 B 53 GLY SER THR LEU LEU HIS PHE ILE LYS LYS HIS ILE HIS SEQRES 5 B 53 GLU SEQRES 1 C 53 MET VAL ILE ALA THR ASP ASP LEU GLU THR THR CYS PRO SEQRES 2 C 53 ASN CYS ASN GLY SER GLY ARG GLU GLU PRO GLU PRO CYS SEQRES 3 C 53 PRO LYS CYS LEU GLY LYS GLY VAL ILE LEU THR ALA GLN SEQRES 4 C 53 GLY SER THR LEU LEU HIS PHE ILE LYS LYS HIS ILE HIS SEQRES 5 C 53 GLU SEQRES 1 D 53 MET VAL ILE ALA THR ASP ASP LEU GLU THR THR CYS PRO SEQRES 2 D 53 ASN CYS ASN GLY SER GLY ARG GLU GLU PRO GLU PRO CYS SEQRES 3 D 53 PRO LYS CYS LEU GLY LYS GLY VAL ILE LEU THR ALA GLN SEQRES 4 D 53 GLY SER THR LEU LEU HIS PHE ILE LYS LYS HIS ILE HIS SEQRES 5 D 53 GLU HET ZN A 54 1 HET ZN B 54 1 HET ZN C 54 1 HET ZN D 54 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *113(H2 O) HELIX 1 1 ALA A 4 LEU A 8 1 5 HELIX 2 2 THR A 37 ILE A 51 1 15 HELIX 3 3 ALA B 4 LEU B 8 1 5 HELIX 4 4 THR B 37 ILE B 51 1 15 HELIX 5 5 ALA C 4 ASP C 7 5 4 HELIX 6 6 THR C 37 ILE C 51 1 15 HELIX 7 7 ALA D 4 LEU D 8 1 5 HELIX 8 8 THR D 37 ILE D 51 1 15 SHEET 1 A 2 GLU A 9 THR A 11 0 SHEET 2 A 2 VAL A 34 LEU A 36 -1 O ILE A 35 N THR A 10 SHEET 1 B 2 ARG A 20 GLU A 21 0 SHEET 2 B 2 GLU A 24 PRO A 25 -1 O GLU A 24 N GLU A 21 SHEET 1 C 2 GLU B 9 THR B 11 0 SHEET 2 C 2 VAL B 34 LEU B 36 -1 O ILE B 35 N THR B 10 SHEET 1 D 2 ARG B 20 GLU B 21 0 SHEET 2 D 2 GLU B 24 PRO B 25 -1 O GLU B 24 N GLU B 21 SHEET 1 E 2 GLU C 9 THR C 11 0 SHEET 2 E 2 VAL C 34 LEU C 36 -1 O ILE C 35 N THR C 10 SHEET 1 F 2 ARG C 20 GLU C 21 0 SHEET 2 F 2 GLU C 24 PRO C 25 -1 O GLU C 24 N GLU C 21 SHEET 1 G 2 GLU D 9 THR D 11 0 SHEET 2 G 2 VAL D 34 LEU D 36 -1 O ILE D 35 N THR D 10 SHEET 1 H 2 ARG D 20 GLU D 21 0 SHEET 2 H 2 GLU D 24 PRO D 25 -1 O GLU D 24 N GLU D 21 LINK SG CYS A 12 ZN ZN A 54 1555 1555 2.31 LINK SG CYS A 15 ZN ZN A 54 1555 1555 2.33 LINK SG CYS A 26 ZN ZN A 54 1555 1555 2.34 LINK SG CYS A 29 ZN ZN A 54 1555 1555 2.32 LINK SG CYS B 12 ZN ZN B 54 1555 1555 2.32 LINK SG CYS B 15 ZN ZN B 54 1555 1555 2.34 LINK SG CYS B 26 ZN ZN B 54 1555 1555 2.34 LINK SG CYS B 29 ZN ZN B 54 1555 1555 2.34 LINK SG CYS C 12 ZN ZN C 54 1555 1555 2.35 LINK SG CYS C 15 ZN ZN C 54 1555 1555 2.36 LINK SG CYS C 26 ZN ZN C 54 1555 1555 2.34 LINK SG CYS C 29 ZN ZN C 54 1555 1555 2.36 LINK SG CYS D 12 ZN ZN D 54 1555 1555 2.34 LINK SG CYS D 15 ZN ZN D 54 1555 1555 2.34 LINK SG CYS D 26 ZN ZN D 54 1555 1555 2.32 LINK SG CYS D 29 ZN ZN D 54 1555 1555 2.33 CISPEP 1 GLU A 22 PRO A 23 0 2.84 CISPEP 2 GLU B 22 PRO B 23 0 2.26 CISPEP 3 GLU C 22 PRO C 23 0 0.12 CISPEP 4 GLU D 22 PRO D 23 0 3.81 SITE 1 AC1 4 CYS A 12 CYS A 15 CYS A 26 CYS A 29 SITE 1 AC2 5 CYS B 12 CYS B 15 GLY B 19 CYS B 26 SITE 2 AC2 5 CYS B 29 SITE 1 AC3 4 CYS C 12 CYS C 15 CYS C 26 CYS C 29 SITE 1 AC4 4 CYS D 12 CYS D 15 CYS D 26 CYS D 29 CRYST1 108.076 108.076 49.370 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009253 0.005342 0.000000 0.00000 SCALE2 0.000000 0.010684 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020255 0.00000