data_3LDJ # _entry.id 3LDJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LDJ RCSB RCSB057143 WWPDB D_1000057143 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3LDM _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3LDJ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-01-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, I.S.' 1 'Kim, T.G.' 2 'Park, B.S.' 3 'Kim, K.H.' 4 # _citation.id primary _citation.title ;Crystal structures of aprotinin and its complex with sucrose octasulfate reveal multiple modes of interactions with implications for heparin binding. ; _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 1090-2104 _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20529698 _citation.pdbx_database_id_DOI 10.1016/j.bbrc.2010.05.113 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, I.S.' 1 ? primary 'Kim, T.G.' 2 ? primary 'Park, B.S.' 3 ? primary 'Cho, K.J.' 4 ? primary 'Lee, J.H.' 5 ? primary 'Park, Y.' 6 ? primary 'Kim, K.H.' 7 ? # _cell.entry_id 3LDJ _cell.length_a 116.397 _cell.length_b 31.054 _cell.length_c 52.422 _cell.angle_alpha 90.00 _cell.angle_beta 116.38 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LDJ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Pancreatic trypsin inhibitor' 6527.568 3 ? ? ? ? 2 branched man '1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose-(2-1)-2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose' 982.803 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 water nat water 18.015 220 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Basic protease inhibitor, BPTI, BPI, Aprotinin' 2 'sucrose octasulfate' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA _entity_poly.pdbx_seq_one_letter_code_can RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 PRO n 1 3 ASP n 1 4 PHE n 1 5 CYS n 1 6 LEU n 1 7 GLU n 1 8 PRO n 1 9 PRO n 1 10 TYR n 1 11 THR n 1 12 GLY n 1 13 PRO n 1 14 CYS n 1 15 LYS n 1 16 ALA n 1 17 ARG n 1 18 ILE n 1 19 ILE n 1 20 ARG n 1 21 TYR n 1 22 PHE n 1 23 TYR n 1 24 ASN n 1 25 ALA n 1 26 LYS n 1 27 ALA n 1 28 GLY n 1 29 LEU n 1 30 CYS n 1 31 GLN n 1 32 THR n 1 33 PHE n 1 34 VAL n 1 35 TYR n 1 36 GLY n 1 37 GLY n 1 38 CYS n 1 39 ARG n 1 40 ALA n 1 41 LYS n 1 42 ARG n 1 43 ASN n 1 44 ASN n 1 45 PHE n 1 46 LYS n 1 47 SER n 1 48 ALA n 1 49 GLU n 1 50 ASP n 1 51 CYS n 1 52 MET n 1 53 ARG n 1 54 THR n 1 55 CYS n 1 56 GLY n 1 57 GLY n 1 58 ALA n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'bovine,cow,domestic cattle,domestic cow' _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BPT1_BOVIN _struct_ref.pdbx_db_accession P00974 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RPDFCLEPPYTGPCKARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LDJ A 1 ? 58 ? P00974 36 ? 93 ? 1 58 2 1 3LDJ B 1 ? 58 ? P00974 36 ? 93 ? 1 58 3 1 3LDJ C 1 ? 58 ? P00974 36 ? 93 ? 1 58 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GU4 'D-saccharide, alpha linking' n 2,3,4,6-tetra-O-sulfonato-alpha-D-glucopyranose ? 'C6 H12 O18 S4' 500.409 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YYJ 'D-saccharide, beta linking' n 1,3,4,6-tetra-O-sulfo-beta-D-fructofuranose ? 'C6 H12 O18 S4' 500.409 # _exptl.crystals_number 1 _exptl.entry_id 3LDJ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 43.24 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '20-25% PEG4000, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A # _reflns.entry_id 3LDJ _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.5 _reflns.d_resolution_low 52.130 _reflns.number_all 27447 _reflns.number_obs 27420 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.07 _reflns.pdbx_netI_over_sigmaI 22.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_Rsym_value 0.40 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LDJ _refine.ls_d_res_high 1.70 _refine.ls_d_res_low 52.13 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.96 _refine.ls_number_reflns_obs 17646 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.19227 _refine.ls_R_factor_R_work 0.19002 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.23428 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 949 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 25.025 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.51 _refine.aniso_B[2][2] 0.410 _refine.aniso_B[3][3] -0.22 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.16 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.931 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.125 _refine.pdbx_overall_ESU_R_Free 0.123 _refine.overall_SU_ML 0.082 _refine.overall_SU_B 2.433 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 55.37 _refine.B_iso_min 6.08 _refine.occupancy_max 1.00 _refine.occupancy_min 0.30 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1332 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 59 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 1611 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 52.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 1433 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.237 2.012 ? 1943 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.714 5.000 ? 165 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 21.114 20.909 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.620 15.000 ? 225 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.780 15.000 ? 18 'X-RAY DIFFRACTION' ? r_chiral_restr 0.142 0.200 ? 194 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1078 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.305 1.500 ? 837 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.077 2.000 ? 1331 'X-RAY DIFFRACTION' ? r_scbond_it 3.230 3.000 ? 596 'X-RAY DIFFRACTION' ? r_scangle_it 5.054 4.500 ? 612 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.702 _refine_ls_shell.d_res_low 1.746 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.76 _refine_ls_shell.number_reflns_R_work 1284 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.240 _refine_ls_shell.R_factor_R_free 0.307 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1962 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LDJ _struct.title 'Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding' _struct.pdbx_descriptor 'Pancreatic trypsin inhibitor' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LDJ _struct_keywords.pdbx_keywords 'HYDROLASE INHIBITOR' _struct_keywords.text 'aprotinin, sucrose octasulfate, Disulfide bond, Protease inhibitor, Secreted, Serine protease inhibitor, HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 2 ? GLU A 7 ? PRO A 2 GLU A 7 5 ? 6 HELX_P HELX_P2 2 SER A 47 ? GLY A 56 ? SER A 47 GLY A 56 1 ? 10 HELX_P HELX_P3 3 PRO B 2 ? GLU B 7 ? PRO B 2 GLU B 7 5 ? 6 HELX_P HELX_P4 4 SER B 47 ? GLY B 56 ? SER B 47 GLY B 56 1 ? 10 HELX_P HELX_P5 5 PRO C 2 ? GLU C 7 ? PRO C 2 GLU C 7 5 ? 6 HELX_P HELX_P6 6 SER C 47 ? GLY C 56 ? SER C 47 GLY C 56 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 5 A CYS 55 1_555 ? ? ? ? ? ? ? 2.076 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 38 SG ? ? A CYS 14 A CYS 38 1_555 ? ? ? ? ? ? ? 2.092 ? ? disulf3 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 30 A CYS 51 1_555 ? ? ? ? ? ? ? 2.102 ? ? disulf4 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 55 SG ? ? B CYS 5 B CYS 55 1_555 ? ? ? ? ? ? ? 2.079 ? ? disulf5 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 38 SG ? ? B CYS 14 B CYS 38 1_555 ? ? ? ? ? ? ? 2.062 ? ? disulf6 disulf ? ? B CYS 30 SG ? ? ? 1_555 B CYS 51 SG ? ? B CYS 30 B CYS 51 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf7 disulf ? ? C CYS 5 SG ? ? ? 1_555 C CYS 55 SG ? ? C CYS 5 C CYS 55 1_555 ? ? ? ? ? ? ? 2.067 ? ? disulf8 disulf ? ? C CYS 14 SG ? ? ? 1_555 C CYS 38 SG ? ? C CYS 14 C CYS 38 1_555 ? ? ? ? ? ? ? 2.075 ? ? disulf9 disulf ? ? C CYS 30 SG ? ? ? 1_555 C CYS 51 SG ? ? C CYS 30 C CYS 51 1_555 ? ? ? ? ? ? ? 2.030 ? ? covale1 covale both ? D GU4 . C1 ? ? ? 1_555 D YYJ . O2 ? ? D GU4 1 D YYJ 2 1_555 ? ? ? ? ? ? ? 1.486 sing ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 18 ? ASN A 24 ? ILE A 18 ASN A 24 A 2 LEU A 29 ? TYR A 35 ? LEU A 29 TYR A 35 B 1 ILE B 18 ? TYR B 23 ? ILE B 18 TYR B 23 B 2 CYS B 30 ? TYR B 35 ? CYS B 30 TYR B 35 C 1 ILE C 18 ? ASN C 24 ? ILE C 18 ASN C 24 C 2 LEU C 29 ? TYR C 35 ? LEU C 29 TYR C 35 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 18 ? N ILE A 18 O TYR A 35 ? O TYR A 35 B 1 2 N ILE B 18 ? N ILE B 18 O TYR B 35 ? O TYR B 35 C 1 2 N ILE C 18 ? N ILE C 18 O TYR C 35 ? O TYR C 35 # _atom_sites.entry_id 3LDJ _atom_sites.fract_transf_matrix[1][1] 0.008591 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.004261 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032202 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021293 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 THR 11 11 11 THR THR A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 ASN 24 24 24 ASN ASN A . n A 1 25 ALA 25 25 25 ALA ALA A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 CYS 38 38 38 CYS CYS A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 GLY 57 57 ? ? ? A . n A 1 58 ALA 58 58 ? ? ? A . n B 1 1 ARG 1 1 1 ARG ARG B . n B 1 2 PRO 2 2 2 PRO PRO B . n B 1 3 ASP 3 3 3 ASP ASP B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 CYS 5 5 5 CYS CYS B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 GLU 7 7 7 GLU GLU B . n B 1 8 PRO 8 8 8 PRO PRO B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 THR 11 11 11 THR THR B . n B 1 12 GLY 12 12 12 GLY GLY B . n B 1 13 PRO 13 13 13 PRO PRO B . n B 1 14 CYS 14 14 14 CYS CYS B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 ALA 16 16 16 ALA ALA B . n B 1 17 ARG 17 17 17 ARG ARG B . n B 1 18 ILE 18 18 18 ILE ILE B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 ARG 20 20 20 ARG ARG B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 PHE 22 22 22 PHE PHE B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 ASN 24 24 24 ASN ASN B . n B 1 25 ALA 25 25 25 ALA ALA B . n B 1 26 LYS 26 26 26 LYS LYS B . n B 1 27 ALA 27 27 27 ALA ALA B . n B 1 28 GLY 28 28 28 GLY GLY B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 CYS 30 30 30 CYS CYS B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 PHE 33 33 33 PHE PHE B . n B 1 34 VAL 34 34 34 VAL VAL B . n B 1 35 TYR 35 35 35 TYR TYR B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 CYS 38 38 38 CYS CYS B . n B 1 39 ARG 39 39 39 ARG ARG B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 ASN 43 43 43 ASN ASN B . n B 1 44 ASN 44 44 44 ASN ASN B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 LYS 46 46 46 LYS LYS B . n B 1 47 SER 47 47 47 SER SER B . n B 1 48 ALA 48 48 48 ALA ALA B . n B 1 49 GLU 49 49 49 GLU GLU B . n B 1 50 ASP 50 50 50 ASP ASP B . n B 1 51 CYS 51 51 51 CYS CYS B . n B 1 52 MET 52 52 52 MET MET B . n B 1 53 ARG 53 53 53 ARG ARG B . n B 1 54 THR 54 54 54 THR THR B . n B 1 55 CYS 55 55 55 CYS CYS B . n B 1 56 GLY 56 56 56 GLY GLY B . n B 1 57 GLY 57 57 ? ? ? B . n B 1 58 ALA 58 58 ? ? ? B . n C 1 1 ARG 1 1 1 ARG ARG C . n C 1 2 PRO 2 2 2 PRO PRO C . n C 1 3 ASP 3 3 3 ASP ASP C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 CYS 5 5 5 CYS CYS C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 GLU 7 7 7 GLU GLU C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 TYR 10 10 10 TYR TYR C . n C 1 11 THR 11 11 11 THR THR C . n C 1 12 GLY 12 12 12 GLY GLY C . n C 1 13 PRO 13 13 13 PRO PRO C . n C 1 14 CYS 14 14 14 CYS CYS C . n C 1 15 LYS 15 15 15 LYS LYS C . n C 1 16 ALA 16 16 16 ALA ALA C . n C 1 17 ARG 17 17 17 ARG ARG C . n C 1 18 ILE 18 18 18 ILE ILE C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 ARG 20 20 20 ARG ARG C . n C 1 21 TYR 21 21 21 TYR TYR C . n C 1 22 PHE 22 22 22 PHE PHE C . n C 1 23 TYR 23 23 23 TYR TYR C . n C 1 24 ASN 24 24 24 ASN ASN C . n C 1 25 ALA 25 25 25 ALA ALA C . n C 1 26 LYS 26 26 26 LYS LYS C . n C 1 27 ALA 27 27 27 ALA ALA C . n C 1 28 GLY 28 28 28 GLY GLY C . n C 1 29 LEU 29 29 29 LEU LEU C . n C 1 30 CYS 30 30 30 CYS CYS C . n C 1 31 GLN 31 31 31 GLN GLN C . n C 1 32 THR 32 32 32 THR THR C . n C 1 33 PHE 33 33 33 PHE PHE C . n C 1 34 VAL 34 34 34 VAL VAL C . n C 1 35 TYR 35 35 35 TYR TYR C . n C 1 36 GLY 36 36 36 GLY GLY C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 CYS 38 38 38 CYS CYS C . n C 1 39 ARG 39 39 39 ARG ARG C . n C 1 40 ALA 40 40 40 ALA ALA C . n C 1 41 LYS 41 41 41 LYS LYS C . n C 1 42 ARG 42 42 42 ARG ARG C . n C 1 43 ASN 43 43 43 ASN ASN C . n C 1 44 ASN 44 44 44 ASN ASN C . n C 1 45 PHE 45 45 45 PHE PHE C . n C 1 46 LYS 46 46 46 LYS LYS C . n C 1 47 SER 47 47 47 SER SER C . n C 1 48 ALA 48 48 48 ALA ALA C . n C 1 49 GLU 49 49 49 GLU GLU C . n C 1 50 ASP 50 50 50 ASP ASP C . n C 1 51 CYS 51 51 51 CYS CYS C . n C 1 52 MET 52 52 52 MET MET C . n C 1 53 ARG 53 53 53 ARG ARG C . n C 1 54 THR 54 54 54 THR THR C . n C 1 55 CYS 55 55 55 CYS CYS C . n C 1 56 GLY 56 56 56 GLY GLY C . n C 1 57 GLY 57 57 ? ? ? C . n C 1 58 ALA 58 58 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ACT 1 1209 1209 ACT ACT C . F 4 HOH 1 59 1 HOH HOH A . F 4 HOH 2 60 3 HOH HOH A . F 4 HOH 3 61 4 HOH HOH A . F 4 HOH 4 62 62 HOH HOH A . F 4 HOH 5 63 5 HOH HOH A . F 4 HOH 6 64 6 HOH HOH A . F 4 HOH 7 65 7 HOH HOH A . F 4 HOH 8 66 10 HOH HOH A . F 4 HOH 9 67 17 HOH HOH A . F 4 HOH 10 68 68 HOH HOH A . F 4 HOH 11 69 23 HOH HOH A . F 4 HOH 12 70 26 HOH HOH A . F 4 HOH 13 71 71 HOH HOH A . F 4 HOH 14 72 72 HOH HOH A . F 4 HOH 15 73 27 HOH HOH A . F 4 HOH 16 74 74 HOH HOH A . F 4 HOH 17 75 75 HOH HOH A . F 4 HOH 18 76 29 HOH HOH A . F 4 HOH 19 77 32 HOH HOH A . F 4 HOH 20 78 78 HOH HOH A . F 4 HOH 21 79 35 HOH HOH A . F 4 HOH 22 80 80 HOH HOH A . F 4 HOH 23 81 81 HOH HOH A . F 4 HOH 24 82 36 HOH HOH A . F 4 HOH 25 83 83 HOH HOH A . F 4 HOH 26 84 40 HOH HOH A . F 4 HOH 27 85 45 HOH HOH A . F 4 HOH 28 86 50 HOH HOH A . F 4 HOH 29 87 55 HOH HOH A . F 4 HOH 30 91 91 HOH HOH A . F 4 HOH 31 92 92 HOH HOH A . F 4 HOH 32 95 95 HOH HOH A . F 4 HOH 33 103 103 HOH HOH A . F 4 HOH 34 106 106 HOH HOH A . F 4 HOH 35 108 108 HOH HOH A . F 4 HOH 36 109 109 HOH HOH A . F 4 HOH 37 112 112 HOH HOH A . F 4 HOH 38 113 113 HOH HOH A . F 4 HOH 39 119 119 HOH HOH A . F 4 HOH 40 121 121 HOH HOH A . F 4 HOH 41 122 122 HOH HOH A . F 4 HOH 42 123 123 HOH HOH A . F 4 HOH 43 126 126 HOH HOH A . F 4 HOH 44 127 127 HOH HOH A . F 4 HOH 45 130 130 HOH HOH A . F 4 HOH 46 133 133 HOH HOH A . F 4 HOH 47 138 138 HOH HOH A . F 4 HOH 48 140 140 HOH HOH A . F 4 HOH 49 142 142 HOH HOH A . F 4 HOH 50 149 149 HOH HOH A . F 4 HOH 51 151 151 HOH HOH A . F 4 HOH 52 153 153 HOH HOH A . F 4 HOH 53 154 154 HOH HOH A . F 4 HOH 54 157 157 HOH HOH A . F 4 HOH 55 161 161 HOH HOH A . F 4 HOH 56 162 162 HOH HOH A . F 4 HOH 57 163 163 HOH HOH A . F 4 HOH 58 176 176 HOH HOH A . F 4 HOH 59 179 179 HOH HOH A . F 4 HOH 60 180 180 HOH HOH A . F 4 HOH 61 183 183 HOH HOH A . F 4 HOH 62 185 185 HOH HOH A . F 4 HOH 63 186 186 HOH HOH A . F 4 HOH 64 191 191 HOH HOH A . F 4 HOH 65 203 203 HOH HOH A . F 4 HOH 66 204 204 HOH HOH A . F 4 HOH 67 205 205 HOH HOH A . F 4 HOH 68 213 213 HOH HOH A . F 4 HOH 69 215 215 HOH HOH A . F 4 HOH 70 218 218 HOH HOH A . F 4 HOH 71 220 220 HOH HOH A . G 4 HOH 1 59 59 HOH HOH B . G 4 HOH 2 60 2 HOH HOH B . G 4 HOH 3 61 61 HOH HOH B . G 4 HOH 4 62 8 HOH HOH B . G 4 HOH 5 63 63 HOH HOH B . G 4 HOH 6 64 11 HOH HOH B . G 4 HOH 7 65 65 HOH HOH B . G 4 HOH 8 66 12 HOH HOH B . G 4 HOH 9 67 67 HOH HOH B . G 4 HOH 10 68 15 HOH HOH B . G 4 HOH 11 69 19 HOH HOH B . G 4 HOH 12 70 22 HOH HOH B . G 4 HOH 13 71 24 HOH HOH B . G 4 HOH 14 72 25 HOH HOH B . G 4 HOH 15 73 73 HOH HOH B . G 4 HOH 16 74 28 HOH HOH B . G 4 HOH 17 75 30 HOH HOH B . G 4 HOH 18 76 31 HOH HOH B . G 4 HOH 19 77 33 HOH HOH B . G 4 HOH 20 78 37 HOH HOH B . G 4 HOH 21 79 39 HOH HOH B . G 4 HOH 22 80 41 HOH HOH B . G 4 HOH 23 81 44 HOH HOH B . G 4 HOH 24 82 82 HOH HOH B . G 4 HOH 25 83 46 HOH HOH B . G 4 HOH 26 84 84 HOH HOH B . G 4 HOH 27 85 47 HOH HOH B . G 4 HOH 28 86 49 HOH HOH B . G 4 HOH 29 87 87 HOH HOH B . G 4 HOH 30 88 51 HOH HOH B . G 4 HOH 31 89 52 HOH HOH B . G 4 HOH 32 90 53 HOH HOH B . G 4 HOH 33 91 57 HOH HOH B . G 4 HOH 34 94 94 HOH HOH B . G 4 HOH 35 96 96 HOH HOH B . G 4 HOH 36 98 98 HOH HOH B . G 4 HOH 37 99 99 HOH HOH B . G 4 HOH 38 100 100 HOH HOH B . G 4 HOH 39 101 101 HOH HOH B . G 4 HOH 40 102 48 HOH HOH B . G 4 HOH 41 104 104 HOH HOH B . G 4 HOH 42 110 110 HOH HOH B . G 4 HOH 43 114 114 HOH HOH B . G 4 HOH 44 115 115 HOH HOH B . G 4 HOH 45 118 118 HOH HOH B . G 4 HOH 46 120 120 HOH HOH B . G 4 HOH 47 125 125 HOH HOH B . G 4 HOH 48 128 128 HOH HOH B . G 4 HOH 49 131 131 HOH HOH B . G 4 HOH 50 135 135 HOH HOH B . G 4 HOH 51 136 136 HOH HOH B . G 4 HOH 52 137 137 HOH HOH B . G 4 HOH 53 141 141 HOH HOH B . G 4 HOH 54 143 143 HOH HOH B . G 4 HOH 55 146 146 HOH HOH B . G 4 HOH 56 148 148 HOH HOH B . G 4 HOH 57 150 150 HOH HOH B . G 4 HOH 58 155 155 HOH HOH B . G 4 HOH 59 158 158 HOH HOH B . G 4 HOH 60 159 159 HOH HOH B . G 4 HOH 61 164 164 HOH HOH B . G 4 HOH 62 168 168 HOH HOH B . G 4 HOH 63 169 169 HOH HOH B . G 4 HOH 64 170 170 HOH HOH B . G 4 HOH 65 171 171 HOH HOH B . G 4 HOH 66 175 175 HOH HOH B . G 4 HOH 67 177 177 HOH HOH B . G 4 HOH 68 187 187 HOH HOH B . G 4 HOH 69 189 189 HOH HOH B . G 4 HOH 70 190 190 HOH HOH B . G 4 HOH 71 193 193 HOH HOH B . G 4 HOH 72 198 198 HOH HOH B . G 4 HOH 73 199 199 HOH HOH B . G 4 HOH 74 202 202 HOH HOH B . G 4 HOH 75 206 206 HOH HOH B . G 4 HOH 76 212 212 HOH HOH B . G 4 HOH 77 214 214 HOH HOH B . G 4 HOH 78 217 217 HOH HOH B . G 4 HOH 79 219 219 HOH HOH B . H 4 HOH 1 59 9 HOH HOH C . H 4 HOH 2 60 60 HOH HOH C . H 4 HOH 3 61 13 HOH HOH C . H 4 HOH 4 62 14 HOH HOH C . H 4 HOH 5 63 16 HOH HOH C . H 4 HOH 6 64 64 HOH HOH C . H 4 HOH 7 65 18 HOH HOH C . H 4 HOH 8 66 66 HOH HOH C . H 4 HOH 9 67 20 HOH HOH C . H 4 HOH 10 68 21 HOH HOH C . H 4 HOH 11 69 69 HOH HOH C . H 4 HOH 12 70 70 HOH HOH C . H 4 HOH 13 71 34 HOH HOH C . H 4 HOH 14 72 38 HOH HOH C . H 4 HOH 15 73 42 HOH HOH C . H 4 HOH 16 74 43 HOH HOH C . H 4 HOH 17 76 76 HOH HOH C . H 4 HOH 18 77 77 HOH HOH C . H 4 HOH 19 78 54 HOH HOH C . H 4 HOH 20 79 79 HOH HOH C . H 4 HOH 21 80 56 HOH HOH C . H 4 HOH 22 81 58 HOH HOH C . H 4 HOH 23 85 85 HOH HOH C . H 4 HOH 24 86 86 HOH HOH C . H 4 HOH 25 88 88 HOH HOH C . H 4 HOH 26 89 89 HOH HOH C . H 4 HOH 27 90 90 HOH HOH C . H 4 HOH 28 93 93 HOH HOH C . H 4 HOH 29 97 97 HOH HOH C . H 4 HOH 30 102 102 HOH HOH C . H 4 HOH 31 105 105 HOH HOH C . H 4 HOH 32 107 107 HOH HOH C . H 4 HOH 33 111 111 HOH HOH C . H 4 HOH 34 116 116 HOH HOH C . H 4 HOH 35 117 117 HOH HOH C . H 4 HOH 36 124 124 HOH HOH C . H 4 HOH 37 129 129 HOH HOH C . H 4 HOH 38 132 132 HOH HOH C . H 4 HOH 39 134 134 HOH HOH C . H 4 HOH 40 139 139 HOH HOH C . H 4 HOH 41 144 144 HOH HOH C . H 4 HOH 42 145 145 HOH HOH C . H 4 HOH 43 147 147 HOH HOH C . H 4 HOH 44 152 152 HOH HOH C . H 4 HOH 45 156 156 HOH HOH C . H 4 HOH 46 160 160 HOH HOH C . H 4 HOH 47 165 165 HOH HOH C . H 4 HOH 48 166 166 HOH HOH C . H 4 HOH 49 167 167 HOH HOH C . H 4 HOH 50 172 172 HOH HOH C . H 4 HOH 51 173 173 HOH HOH C . H 4 HOH 52 174 174 HOH HOH C . H 4 HOH 53 178 178 HOH HOH C . H 4 HOH 54 181 181 HOH HOH C . H 4 HOH 55 182 182 HOH HOH C . H 4 HOH 56 184 184 HOH HOH C . H 4 HOH 57 188 188 HOH HOH C . H 4 HOH 58 192 192 HOH HOH C . H 4 HOH 59 194 194 HOH HOH C . H 4 HOH 60 195 195 HOH HOH C . H 4 HOH 61 196 196 HOH HOH C . H 4 HOH 62 197 197 HOH HOH C . H 4 HOH 63 200 200 HOH HOH C . H 4 HOH 64 201 201 HOH HOH C . H 4 HOH 65 207 207 HOH HOH C . H 4 HOH 66 208 208 HOH HOH C . H 4 HOH 67 209 209 HOH HOH C . H 4 HOH 68 210 210 HOH HOH C . H 4 HOH 69 211 211 HOH HOH C . H 4 HOH 70 216 216 HOH HOH C . # _pdbx_molecule_features.prd_id PRD_900013 _pdbx_molecule_features.name 'sucrose octasulfate' _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class 'Substrate analog' _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900013 _pdbx_molecule.asym_id D # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 3 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,F 2 1 B,D,G 3 1 C,E,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-15 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' entity_name_com 5 3 'Structure model' pdbx_branch_scheme 6 3 'Structure model' pdbx_chem_comp_identifier 7 3 'Structure model' pdbx_entity_branch 8 3 'Structure model' pdbx_entity_branch_descriptor 9 3 'Structure model' pdbx_entity_branch_link 10 3 'Structure model' pdbx_entity_branch_list 11 3 'Structure model' pdbx_entity_nonpoly 12 3 'Structure model' pdbx_molecule_features 13 3 'Structure model' pdbx_nonpoly_scheme 14 3 'Structure model' struct_conn 15 3 'Structure model' struct_conn_type 16 3 'Structure model' struct_site 17 3 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_atom_id' 10 3 'Structure model' '_atom_site.label_comp_id' 11 3 'Structure model' '_atom_site.type_symbol' 12 3 'Structure model' '_chem_comp.formula' 13 3 'Structure model' '_chem_comp.formula_weight' 14 3 'Structure model' '_chem_comp.id' 15 3 'Structure model' '_chem_comp.mon_nstd_flag' 16 3 'Structure model' '_chem_comp.name' 17 3 'Structure model' '_chem_comp.type' 18 3 'Structure model' '_entity.formula_weight' 19 3 'Structure model' '_entity.pdbx_description' 20 3 'Structure model' '_entity.type' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 73 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 217 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 126 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 126 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 1.90 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.704 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.108 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 44 ? ? -162.11 105.99 2 1 ASN B 44 ? ? -165.53 107.49 3 1 ARG C 39 ? ? 71.02 30.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 57 ? A GLY 57 2 1 Y 1 A ALA 58 ? A ALA 58 3 1 Y 1 B GLY 57 ? B GLY 57 4 1 Y 1 B ALA 58 ? B ALA 58 5 1 Y 1 C GLY 57 ? C GLY 57 6 1 Y 1 C ALA 58 ? C ALA 58 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero D 2 GU4 1 D GU4 1 ? SCR 6124 n D 2 YYJ 2 D YYJ 2 ? SCR 6124 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GU4 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 'DGlcp[2S,3S,4S,6S]a' GU4 'COMMON NAME' GMML 1.0 2-sulfo-3-sulfo-4-sulfo-6-sulfo-a-D-glucopyranose GU4 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp2SO33SO34SO36SO3 # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 ;WURCS=2.0/2,2,1/[ha122h-2b_2-5_1*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O][a2122h-1a_1-5_2*OSO/3=O/3=O_3*OSO/3=O/3=O_4*OSO/3=O/3=O_6*OSO/3=O/3=O]/1-2/a2-b1 ; WURCS PDB2Glycan 1.1.0 2 2 '[][b-D-Fruf1SO33SO34SO36SO3]{[(2+1)][a-D-Glcp2SO33SO34SO36SO3]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GU4 _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 YYJ _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GU4 1 n 2 YYJ 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ACETATE ION' ACT 4 water HOH #