data_3LE0 # _entry.id 3LE0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LE0 pdb_00003le0 10.2210/pdb3le0/pdb RCSB RCSB057160 ? ? WWPDB D_1000057160 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LEG 'The same protein complexed with Lewis Y antigen' unspecified PDB 3LEI 'The same protein complexed with fucose' unspecified PDB 3LEK 'The same protein complexed with Lewis B Antigen' unspecified # _pdbx_database_status.entry_id 3LE0 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-13 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Feil, S.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Structure of the lectin regulatory domain of the cholesterol-dependent cytolysin lectinolysin reveals the basis for its lewis antigen specificity. ; _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 248 _citation.page_last 258 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22325774 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.11.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feil, S.C.' 1 ? primary 'Lawrence, S.' 2 ? primary 'Mulhern, T.D.' 3 ? primary 'Holien, J.K.' 4 ? primary 'Hotze, E.M.' 5 ? primary 'Farrand, S.' 6 ? primary 'Tweten, R.K.' 7 ? primary 'Parker, M.W.' 8 ? # _cell.entry_id 3LE0 _cell.length_a 67.189 _cell.length_b 67.189 _cell.length_c 98.322 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LE0 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Platelet aggregation factor Sm-hPAF' 16867.479 1 ? Q190C 'Mutant of the lectin domain of lectinolysin, residues 44 to 185' ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 164 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_seq_one_letter_code_can ;EQGNRPVETENIARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLN n 1 3 GLY n 1 4 ASN n 1 5 ARG n 1 6 PRO n 1 7 VAL n 1 8 GLU n 1 9 THR n 1 10 GLU n 1 11 ASN n 1 12 ILE n 1 13 ALA n 1 14 ARG n 1 15 GLY n 1 16 LYS n 1 17 GLN n 1 18 ALA n 1 19 SER n 1 20 GLN n 1 21 SER n 1 22 SER n 1 23 THR n 1 24 ALA n 1 25 TYR n 1 26 GLY n 1 27 GLY n 1 28 ALA n 1 29 ALA n 1 30 THR n 1 31 ARG n 1 32 ALA n 1 33 VAL n 1 34 ASP n 1 35 GLY n 1 36 ASN n 1 37 VAL n 1 38 ASP n 1 39 SER n 1 40 ASP n 1 41 TYR n 1 42 GLY n 1 43 HIS n 1 44 HIS n 1 45 SER n 1 46 VAL n 1 47 THR n 1 48 HIS n 1 49 THR n 1 50 ASN n 1 51 PHE n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 ALA n 1 56 TRP n 1 57 TRP n 1 58 GLN n 1 59 VAL n 1 60 ASP n 1 61 LEU n 1 62 GLY n 1 63 LYS n 1 64 THR n 1 65 GLU n 1 66 ASN n 1 67 VAL n 1 68 GLY n 1 69 LYS n 1 70 VAL n 1 71 LYS n 1 72 LEU n 1 73 TYR n 1 74 ASN n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 GLY n 1 79 ASN n 1 80 VAL n 1 81 ALA n 1 82 ASN n 1 83 ARG n 1 84 LEU n 1 85 SER n 1 86 ASN n 1 87 PHE n 1 88 ASP n 1 89 VAL n 1 90 VAL n 1 91 LEU n 1 92 LEU n 1 93 ASN n 1 94 GLU n 1 95 ALA n 1 96 LYS n 1 97 GLN n 1 98 GLU n 1 99 VAL n 1 100 ALA n 1 101 ARG n 1 102 GLN n 1 103 HIS n 1 104 PHE n 1 105 ASP n 1 106 SER n 1 107 LEU n 1 108 ASN n 1 109 GLY n 1 110 LYS n 1 111 ALA n 1 112 GLU n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 PHE n 1 117 PHE n 1 118 THR n 1 119 ALA n 1 120 LYS n 1 121 ASP n 1 122 ALA n 1 123 ARG n 1 124 TYR n 1 125 VAL n 1 126 LYS n 1 127 VAL n 1 128 GLU n 1 129 LEU n 1 130 LYS n 1 131 THR n 1 132 LYS n 1 133 ASN n 1 134 THR n 1 135 PRO n 1 136 LEU n 1 137 SER n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 VAL n 1 142 GLU n 1 143 VAL n 1 144 PHE n 1 145 ARG n 1 146 SER n 1 147 ALA n 1 148 THR n 1 149 THR n 1 150 GLN n 1 151 VAL n 1 152 GLY n 1 153 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene samhpaf _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Nm-65 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mitis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28037 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSg7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2PHL4_STRMT _struct_ref.pdbx_db_accession Q2PHL4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAYGGAAARAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKAARYVKVELKTKNTPLSLAEVEVFRSATTQVGQ ; _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LE0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2PHL4 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 38 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LE0 THR A 30 ? UNP Q2PHL4 ALA 67 'SEE REMARK 999' 67 1 1 3LE0 ASP A 121 ? UNP Q2PHL4 ALA 158 'SEE REMARK 999' 158 2 1 3LE0 CYS A 153 ? UNP Q2PHL4 GLN 190 'engineered mutation' 190 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LE0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.29 _exptl_crystal.density_percent_sol 62.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2M MgSO4, 100mM Tris, pH 8.5, vapor diffusion, hanging drop, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-03-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'bent conical Si mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00 # _reflns.entry_id 3LE0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.46 _reflns.d_resolution_high 1.900 _reflns.number_obs 16856 _reflns.number_all ? _reflns.percent_possible_obs 91.500 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.500 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 15.900 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 72.30 0.556 ? ? 13.80 ? ? ? ? ? ? 1 1 1.97 2.05 99.90 0.269 ? ? 16.60 ? ? ? ? ? ? 2 1 2.05 2.14 100.00 0.233 ? ? 16.50 ? ? ? ? ? ? 3 1 2.14 2.25 69.80 0.217 ? ? 15.90 ? ? ? ? ? ? 4 1 2.25 2.39 91.10 0.158 ? ? 16.10 ? ? ? ? ? ? 5 1 2.39 2.58 100.00 0.128 ? ? 16.80 ? ? ? ? ? ? 6 1 2.58 2.84 100.00 0.103 ? ? 16.70 ? ? ? ? ? ? 7 1 2.84 3.25 99.80 0.079 ? ? 16.50 ? ? ? ? ? ? 8 1 3.25 4.09 83.40 0.072 ? ? 15.10 ? ? ? ? ? ? 9 1 4.09 50.00 97.70 0.063 ? ? 14.70 ? ? ? ? ? ? 10 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3LE0 _refine.ls_number_reflns_obs 15702 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.46 _refine.ls_d_res_high 1.91 _refine.ls_percent_reflns_obs 90.92 _refine.ls_R_factor_obs 0.17612 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17457 _refine.ls_R_factor_R_free 0.20570 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 844 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.40 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.957 _refine.correlation_coeff_Fo_to_Fc_free 0.944 _refine.B_iso_mean 25.947 _refine.aniso_B[1][1] -0.57 _refine.aniso_B[2][2] -0.57 _refine.aniso_B[3][3] 1.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 2J1R' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.122 _refine.pdbx_overall_ESU_R_Free 0.118 _refine.overall_SU_ML 0.071 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.454 _refine.overall_SU_R_Cruickshank_DPI 0.123 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1107 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 164 _refine_hist.number_atoms_total 1279 _refine_hist.d_res_high 1.91 _refine_hist.d_res_low 29.46 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.021 ? 1136 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.466 1.919 ? 1537 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.424 5.000 ? 143 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.145 25.082 ? 61 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.891 15.000 ? 188 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 8.840 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.133 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 877 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.909 1.500 ? 703 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.677 2.000 ? 1124 'X-RAY DIFFRACTION' ? r_scbond_it 2.519 3.000 ? 433 'X-RAY DIFFRACTION' ? r_scangle_it 4.246 4.500 ? 412 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.907 _refine_ls_shell.d_res_low 1.956 _refine_ls_shell.number_reflns_R_work 760 _refine_ls_shell.R_factor_R_work 0.381 _refine_ls_shell.percent_reflns_obs 62.03 _refine_ls_shell.R_factor_R_free 0.405 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3LE0 _struct.title 'Lectin Domain of Lectinolysin complexed with Glycerol' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LE0 _struct_keywords.text 'lectin domain of lectinolysin, BLOOD CLOTTING, glycerol, nickel' _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 28 ? ASP A 34 ? ALA A 65 ASP A 71 5 ? 7 HELX_P HELX_P2 2 ASP A 40 ? HIS A 44 ? ASP A 77 HIS A 81 5 ? 5 HELX_P HELX_P3 3 VAL A 80 ? LEU A 84 ? VAL A 117 LEU A 121 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A ARG 31 O ? ? A CA 1 A ARG 68 1_555 ? ? ? ? ? ? ? 2.276 ? ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A ASP 34 OD1 ? ? A CA 1 A ASP 71 1_555 ? ? ? ? ? ? ? 2.424 ? ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A ASN 36 O ? ? A CA 1 A ASN 73 1_555 ? ? ? ? ? ? ? 2.358 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 A SER 45 OG ? ? A CA 1 A SER 82 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 A SER 45 O ? ? A CA 1 A SER 82 1_555 ? ? ? ? ? ? ? 2.561 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 A ALA 139 O ? ? A CA 1 A ALA 176 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc7 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 140 OE1 ? ? A CA 1 A GLU 177 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc8 metalc ? ? A HIS 43 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 80 A NI 191 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc9 metalc ? ? C NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 297 1_555 ? ? ? ? ? ? ? 2.021 ? ? metalc10 metalc ? ? C NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 298 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc11 metalc ? ? C NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 299 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc12 metalc ? ? C NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 300 1_555 ? ? ? ? ? ? ? 2.141 ? ? metalc13 metalc ? ? C NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 301 1_555 ? ? ? ? ? ? ? 2.118 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 A 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 A 3 GLU A 112 ? LEU A 129 ? GLU A 149 LEU A 166 A 4 PHE A 87 ? LEU A 92 ? PHE A 124 LEU A 129 A 5 GLU A 98 ? PHE A 104 ? GLU A 135 PHE A 141 B 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 B 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 B 3 LEU A 138 ? ARG A 145 ? LEU A 175 ARG A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 A 2 3 N VAL A 70 ? N VAL A 107 O VAL A 115 ? O VAL A 152 A 3 4 O LYS A 126 ? O LYS A 163 N VAL A 90 ? N VAL A 127 A 4 5 N LEU A 91 ? N LEU A 128 O VAL A 99 ? O VAL A 136 B 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 B 2 3 N LYS A 71 ? N LYS A 108 O GLU A 142 ? O GLU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 1 ? 6 'BINDING SITE FOR RESIDUE CA A 1' AC2 Software A NI 191 ? 6 'BINDING SITE FOR RESIDUE NI A 191' AC3 Software A GOL 192 ? 4 'BINDING SITE FOR RESIDUE GOL A 192' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ARG A 31 ? ARG A 68 . ? 1_555 ? 2 AC1 6 ASP A 34 ? ASP A 71 . ? 1_555 ? 3 AC1 6 ASN A 36 ? ASN A 73 . ? 1_555 ? 4 AC1 6 SER A 45 ? SER A 82 . ? 1_555 ? 5 AC1 6 ALA A 139 ? ALA A 176 . ? 1_555 ? 6 AC1 6 GLU A 140 ? GLU A 177 . ? 1_555 ? 7 AC2 6 HIS A 43 ? HIS A 80 . ? 1_555 ? 8 AC2 6 HOH E . ? HOH A 297 . ? 1_555 ? 9 AC2 6 HOH E . ? HOH A 298 . ? 1_555 ? 10 AC2 6 HOH E . ? HOH A 299 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 300 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 301 . ? 1_555 ? 13 AC3 4 TYR A 25 ? TYR A 62 . ? 1_555 ? 14 AC3 4 HIS A 48 ? HIS A 85 . ? 1_555 ? 15 AC3 4 ARG A 75 ? ARG A 112 . ? 1_555 ? 16 AC3 4 ARG A 83 ? ARG A 120 . ? 1_555 ? # _atom_sites.entry_id 3LE0 _atom_sites.fract_transf_matrix[1][1] 0.014883 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014883 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010171 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NI O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 38 ? ? ? A . n A 1 2 GLN 2 39 ? ? ? A . n A 1 3 GLY 3 40 ? ? ? A . n A 1 4 ASN 4 41 ? ? ? A . n A 1 5 ARG 5 42 ? ? ? A . n A 1 6 PRO 6 43 ? ? ? A . n A 1 7 VAL 7 44 44 VAL VAL A . n A 1 8 GLU 8 45 45 GLU GLU A . n A 1 9 THR 9 46 46 THR THR A . n A 1 10 GLU 10 47 47 GLU GLU A . n A 1 11 ASN 11 48 48 ASN ASN A . n A 1 12 ILE 12 49 49 ILE ILE A . n A 1 13 ALA 13 50 50 ALA ALA A . n A 1 14 ARG 14 51 51 ARG ARG A . n A 1 15 GLY 15 52 52 GLY GLY A . n A 1 16 LYS 16 53 53 LYS LYS A . n A 1 17 GLN 17 54 54 GLN GLN A . n A 1 18 ALA 18 55 55 ALA ALA A . n A 1 19 SER 19 56 56 SER SER A . n A 1 20 GLN 20 57 57 GLN GLN A . n A 1 21 SER 21 58 58 SER SER A . n A 1 22 SER 22 59 59 SER SER A . n A 1 23 THR 23 60 60 THR THR A . n A 1 24 ALA 24 61 61 ALA ALA A . n A 1 25 TYR 25 62 62 TYR TYR A . n A 1 26 GLY 26 63 63 GLY GLY A . n A 1 27 GLY 27 64 64 GLY GLY A . n A 1 28 ALA 28 65 65 ALA ALA A . n A 1 29 ALA 29 66 66 ALA ALA A . n A 1 30 THR 30 67 67 THR THR A . n A 1 31 ARG 31 68 68 ARG ARG A . n A 1 32 ALA 32 69 69 ALA ALA A . n A 1 33 VAL 33 70 70 VAL VAL A . n A 1 34 ASP 34 71 71 ASP ASP A . n A 1 35 GLY 35 72 72 GLY GLY A . n A 1 36 ASN 36 73 73 ASN ASN A . n A 1 37 VAL 37 74 74 VAL VAL A . n A 1 38 ASP 38 75 75 ASP ASP A . n A 1 39 SER 39 76 76 SER SER A . n A 1 40 ASP 40 77 77 ASP ASP A . n A 1 41 TYR 41 78 78 TYR TYR A . n A 1 42 GLY 42 79 79 GLY GLY A . n A 1 43 HIS 43 80 80 HIS HIS A . n A 1 44 HIS 44 81 81 HIS HIS A . n A 1 45 SER 45 82 82 SER SER A . n A 1 46 VAL 46 83 83 VAL VAL A . n A 1 47 THR 47 84 84 THR THR A . n A 1 48 HIS 48 85 85 HIS HIS A . n A 1 49 THR 49 86 86 THR THR A . n A 1 50 ASN 50 87 87 ASN ASN A . n A 1 51 PHE 51 88 88 PHE PHE A . n A 1 52 GLU 52 89 89 GLU GLU A . n A 1 53 ASP 53 90 90 ASP ASP A . n A 1 54 ASN 54 91 91 ASN ASN A . n A 1 55 ALA 55 92 92 ALA ALA A . n A 1 56 TRP 56 93 93 TRP TRP A . n A 1 57 TRP 57 94 94 TRP TRP A . n A 1 58 GLN 58 95 95 GLN GLN A . n A 1 59 VAL 59 96 96 VAL VAL A . n A 1 60 ASP 60 97 97 ASP ASP A . n A 1 61 LEU 61 98 98 LEU LEU A . n A 1 62 GLY 62 99 99 GLY GLY A . n A 1 63 LYS 63 100 100 LYS LYS A . n A 1 64 THR 64 101 101 THR THR A . n A 1 65 GLU 65 102 102 GLU GLU A . n A 1 66 ASN 66 103 103 ASN ASN A . n A 1 67 VAL 67 104 104 VAL VAL A . n A 1 68 GLY 68 105 105 GLY GLY A . n A 1 69 LYS 69 106 106 LYS LYS A . n A 1 70 VAL 70 107 107 VAL VAL A . n A 1 71 LYS 71 108 108 LYS LYS A . n A 1 72 LEU 72 109 109 LEU LEU A . n A 1 73 TYR 73 110 110 TYR TYR A . n A 1 74 ASN 74 111 111 ASN ASN A . n A 1 75 ARG 75 112 112 ARG ARG A . n A 1 76 GLY 76 113 113 GLY GLY A . n A 1 77 ASP 77 114 114 ASP ASP A . n A 1 78 GLY 78 115 115 GLY GLY A . n A 1 79 ASN 79 116 116 ASN ASN A . n A 1 80 VAL 80 117 117 VAL VAL A . n A 1 81 ALA 81 118 118 ALA ALA A . n A 1 82 ASN 82 119 119 ASN ASN A . n A 1 83 ARG 83 120 120 ARG ARG A . n A 1 84 LEU 84 121 121 LEU LEU A . n A 1 85 SER 85 122 122 SER SER A . n A 1 86 ASN 86 123 123 ASN ASN A . n A 1 87 PHE 87 124 124 PHE PHE A . n A 1 88 ASP 88 125 125 ASP ASP A . n A 1 89 VAL 89 126 126 VAL VAL A . n A 1 90 VAL 90 127 127 VAL VAL A . n A 1 91 LEU 91 128 128 LEU LEU A . n A 1 92 LEU 92 129 129 LEU LEU A . n A 1 93 ASN 93 130 130 ASN ASN A . n A 1 94 GLU 94 131 131 GLU GLU A . n A 1 95 ALA 95 132 132 ALA ALA A . n A 1 96 LYS 96 133 133 LYS LYS A . n A 1 97 GLN 97 134 134 GLN GLN A . n A 1 98 GLU 98 135 135 GLU GLU A . n A 1 99 VAL 99 136 136 VAL VAL A . n A 1 100 ALA 100 137 137 ALA ALA A . n A 1 101 ARG 101 138 138 ARG ARG A . n A 1 102 GLN 102 139 139 GLN GLN A . n A 1 103 HIS 103 140 140 HIS HIS A . n A 1 104 PHE 104 141 141 PHE PHE A . n A 1 105 ASP 105 142 142 ASP ASP A . n A 1 106 SER 106 143 143 SER SER A . n A 1 107 LEU 107 144 144 LEU LEU A . n A 1 108 ASN 108 145 145 ASN ASN A . n A 1 109 GLY 109 146 146 GLY GLY A . n A 1 110 LYS 110 147 147 LYS LYS A . n A 1 111 ALA 111 148 148 ALA ALA A . n A 1 112 GLU 112 149 149 GLU GLU A . n A 1 113 LEU 113 150 150 LEU LEU A . n A 1 114 GLU 114 151 151 GLU GLU A . n A 1 115 VAL 115 152 152 VAL VAL A . n A 1 116 PHE 116 153 153 PHE PHE A . n A 1 117 PHE 117 154 154 PHE PHE A . n A 1 118 THR 118 155 155 THR THR A . n A 1 119 ALA 119 156 156 ALA ALA A . n A 1 120 LYS 120 157 157 LYS LYS A . n A 1 121 ASP 121 158 158 ASP ASP A . n A 1 122 ALA 122 159 159 ALA ALA A . n A 1 123 ARG 123 160 160 ARG ARG A . n A 1 124 TYR 124 161 161 TYR TYR A . n A 1 125 VAL 125 162 162 VAL VAL A . n A 1 126 LYS 126 163 163 LYS LYS A . n A 1 127 VAL 127 164 164 VAL VAL A . n A 1 128 GLU 128 165 165 GLU GLU A . n A 1 129 LEU 129 166 166 LEU LEU A . n A 1 130 LYS 130 167 167 LYS LYS A . n A 1 131 THR 131 168 168 THR THR A . n A 1 132 LYS 132 169 169 LYS LYS A . n A 1 133 ASN 133 170 170 ASN ASN A . n A 1 134 THR 134 171 171 THR THR A . n A 1 135 PRO 135 172 172 PRO PRO A . n A 1 136 LEU 136 173 173 LEU LEU A . n A 1 137 SER 137 174 174 SER SER A . n A 1 138 LEU 138 175 175 LEU LEU A . n A 1 139 ALA 139 176 176 ALA ALA A . n A 1 140 GLU 140 177 177 GLU GLU A . n A 1 141 VAL 141 178 178 VAL VAL A . n A 1 142 GLU 142 179 179 GLU GLU A . n A 1 143 VAL 143 180 180 VAL VAL A . n A 1 144 PHE 144 181 181 PHE PHE A . n A 1 145 ARG 145 182 182 ARG ARG A . n A 1 146 SER 146 183 183 SER SER A . n A 1 147 ALA 147 184 184 ALA ALA A . n A 1 148 THR 148 185 185 THR THR A . n A 1 149 THR 149 186 ? ? ? A . n A 1 150 GLN 150 187 ? ? ? A . n A 1 151 VAL 151 188 ? ? ? A . n A 1 152 GLY 152 189 ? ? ? A . n A 1 153 CYS 153 190 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1 1 CA CA A . C 3 NI 1 191 191 NI NI A . D 4 GOL 1 192 192 GOL GOL A . E 5 HOH 1 2 2 HOH HOH A . E 5 HOH 2 3 3 HOH HOH A . E 5 HOH 3 4 4 HOH HOH A . E 5 HOH 4 5 5 HOH HOH A . E 5 HOH 5 6 6 HOH HOH A . E 5 HOH 6 7 7 HOH HOH A . E 5 HOH 7 8 8 HOH HOH A . E 5 HOH 8 9 9 HOH HOH A . E 5 HOH 9 10 10 HOH HOH A . E 5 HOH 10 11 11 HOH HOH A . E 5 HOH 11 12 12 HOH HOH A . E 5 HOH 12 13 13 HOH HOH A . E 5 HOH 13 14 14 HOH HOH A . E 5 HOH 14 15 15 HOH HOH A . E 5 HOH 15 16 16 HOH HOH A . E 5 HOH 16 17 17 HOH HOH A . E 5 HOH 17 18 18 HOH HOH A . E 5 HOH 18 19 19 HOH HOH A . E 5 HOH 19 20 20 HOH HOH A . E 5 HOH 20 21 21 HOH HOH A . E 5 HOH 21 22 22 HOH HOH A . E 5 HOH 22 23 23 HOH HOH A . E 5 HOH 23 24 24 HOH HOH A . E 5 HOH 24 25 25 HOH HOH A . E 5 HOH 25 26 26 HOH HOH A . E 5 HOH 26 27 27 HOH HOH A . E 5 HOH 27 28 28 HOH HOH A . E 5 HOH 28 29 29 HOH HOH A . E 5 HOH 29 30 30 HOH HOH A . E 5 HOH 30 31 31 HOH HOH A . E 5 HOH 31 32 32 HOH HOH A . E 5 HOH 32 33 33 HOH HOH A . E 5 HOH 33 34 34 HOH HOH A . E 5 HOH 34 35 35 HOH HOH A . E 5 HOH 35 36 36 HOH HOH A . E 5 HOH 36 37 37 HOH HOH A . E 5 HOH 37 193 193 HOH HOH A . E 5 HOH 38 194 194 HOH HOH A . E 5 HOH 39 195 195 HOH HOH A . E 5 HOH 40 196 196 HOH HOH A . E 5 HOH 41 197 197 HOH HOH A . E 5 HOH 42 198 198 HOH HOH A . E 5 HOH 43 199 199 HOH HOH A . E 5 HOH 44 200 200 HOH HOH A . E 5 HOH 45 201 201 HOH HOH A . E 5 HOH 46 202 202 HOH HOH A . E 5 HOH 47 203 203 HOH HOH A . E 5 HOH 48 204 204 HOH HOH A . E 5 HOH 49 205 205 HOH HOH A . E 5 HOH 50 206 206 HOH HOH A . E 5 HOH 51 207 207 HOH HOH A . E 5 HOH 52 208 208 HOH HOH A . E 5 HOH 53 209 209 HOH HOH A . E 5 HOH 54 210 210 HOH HOH A . E 5 HOH 55 211 211 HOH HOH A . E 5 HOH 56 212 212 HOH HOH A . E 5 HOH 57 213 213 HOH HOH A . E 5 HOH 58 214 214 HOH HOH A . E 5 HOH 59 215 215 HOH HOH A . E 5 HOH 60 216 216 HOH HOH A . E 5 HOH 61 217 217 HOH HOH A . E 5 HOH 62 218 218 HOH HOH A . E 5 HOH 63 219 219 HOH HOH A . E 5 HOH 64 220 220 HOH HOH A . E 5 HOH 65 221 221 HOH HOH A . E 5 HOH 66 222 222 HOH HOH A . E 5 HOH 67 223 223 HOH HOH A . E 5 HOH 68 224 224 HOH HOH A . E 5 HOH 69 225 225 HOH HOH A . E 5 HOH 70 226 226 HOH HOH A . E 5 HOH 71 227 227 HOH HOH A . E 5 HOH 72 228 228 HOH HOH A . E 5 HOH 73 229 229 HOH HOH A . E 5 HOH 74 230 230 HOH HOH A . E 5 HOH 75 231 231 HOH HOH A . E 5 HOH 76 232 232 HOH HOH A . E 5 HOH 77 233 233 HOH HOH A . E 5 HOH 78 234 234 HOH HOH A . E 5 HOH 79 235 235 HOH HOH A . E 5 HOH 80 236 236 HOH HOH A . E 5 HOH 81 237 237 HOH HOH A . E 5 HOH 82 238 238 HOH HOH A . E 5 HOH 83 239 239 HOH HOH A . E 5 HOH 84 240 240 HOH HOH A . E 5 HOH 85 241 241 HOH HOH A . E 5 HOH 86 242 242 HOH HOH A . E 5 HOH 87 243 243 HOH HOH A . E 5 HOH 88 244 244 HOH HOH A . E 5 HOH 89 245 245 HOH HOH A . E 5 HOH 90 246 246 HOH HOH A . E 5 HOH 91 247 247 HOH HOH A . E 5 HOH 92 248 248 HOH HOH A . E 5 HOH 93 249 249 HOH HOH A . E 5 HOH 94 250 250 HOH HOH A . E 5 HOH 95 251 251 HOH HOH A . E 5 HOH 96 252 252 HOH HOH A . E 5 HOH 97 253 253 HOH HOH A . E 5 HOH 98 254 254 HOH HOH A . E 5 HOH 99 255 255 HOH HOH A . E 5 HOH 100 256 256 HOH HOH A . E 5 HOH 101 257 257 HOH HOH A . E 5 HOH 102 258 258 HOH HOH A . E 5 HOH 103 259 259 HOH HOH A . E 5 HOH 104 260 260 HOH HOH A . E 5 HOH 105 261 261 HOH HOH A . E 5 HOH 106 262 262 HOH HOH A . E 5 HOH 107 263 263 HOH HOH A . E 5 HOH 108 264 264 HOH HOH A . E 5 HOH 109 265 265 HOH HOH A . E 5 HOH 110 266 266 HOH HOH A . E 5 HOH 111 267 267 HOH HOH A . E 5 HOH 112 268 268 HOH HOH A . E 5 HOH 113 269 269 HOH HOH A . E 5 HOH 114 270 270 HOH HOH A . E 5 HOH 115 271 271 HOH HOH A . E 5 HOH 116 272 272 HOH HOH A . E 5 HOH 117 273 273 HOH HOH A . E 5 HOH 118 274 274 HOH HOH A . E 5 HOH 119 275 275 HOH HOH A . E 5 HOH 120 276 276 HOH HOH A . E 5 HOH 121 277 277 HOH HOH A . E 5 HOH 122 278 278 HOH HOH A . E 5 HOH 123 279 279 HOH HOH A . E 5 HOH 124 280 280 HOH HOH A . E 5 HOH 125 281 281 HOH HOH A . E 5 HOH 126 282 282 HOH HOH A . E 5 HOH 127 283 283 HOH HOH A . E 5 HOH 128 284 284 HOH HOH A . E 5 HOH 129 285 285 HOH HOH A . E 5 HOH 130 286 286 HOH HOH A . E 5 HOH 131 287 287 HOH HOH A . E 5 HOH 132 288 288 HOH HOH A . E 5 HOH 133 289 289 HOH HOH A . E 5 HOH 134 290 290 HOH HOH A . E 5 HOH 135 291 291 HOH HOH A . E 5 HOH 136 292 292 HOH HOH A . E 5 HOH 137 293 293 HOH HOH A . E 5 HOH 138 294 294 HOH HOH A . E 5 HOH 139 295 295 HOH HOH A . E 5 HOH 140 296 296 HOH HOH A . E 5 HOH 141 297 297 HOH HOH A . E 5 HOH 142 298 298 HOH HOH A . E 5 HOH 143 299 299 HOH HOH A . E 5 HOH 144 300 300 HOH HOH A . E 5 HOH 145 301 301 HOH HOH A . E 5 HOH 146 302 302 HOH HOH A . E 5 HOH 147 303 303 HOH HOH A . E 5 HOH 148 304 304 HOH HOH A . E 5 HOH 149 305 305 HOH HOH A . E 5 HOH 150 306 306 HOH HOH A . E 5 HOH 151 307 307 HOH HOH A . E 5 HOH 152 308 308 HOH HOH A . E 5 HOH 153 309 309 HOH HOH A . E 5 HOH 154 310 310 HOH HOH A . E 5 HOH 155 311 311 HOH HOH A . E 5 HOH 156 312 312 HOH HOH A . E 5 HOH 157 313 313 HOH HOH A . E 5 HOH 158 314 314 HOH HOH A . E 5 HOH 159 315 315 HOH HOH A . E 5 HOH 160 316 316 HOH HOH A . E 5 HOH 161 317 317 HOH HOH A . E 5 HOH 162 318 318 HOH HOH A . E 5 HOH 163 319 319 HOH HOH A . E 5 HOH 164 320 320 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 76.3 ? 2 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 165.2 ? 3 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 91.1 ? 4 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 103.2 ? 5 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 70.9 ? 6 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 79.4 ? 7 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 79.2 ? 8 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 128.1 ? 9 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 115.1 ? 10 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 71.2 ? 11 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 95.2 ? 12 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 155.8 ? 13 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 93.3 ? 14 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 133.3 ? 15 O ? A SER 45 ? A SER 82 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 70.7 ? 16 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 88.2 ? 17 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 75.6 ? 18 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 81.1 ? 19 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 140.6 ? 20 O ? A SER 45 ? A SER 82 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 148.2 ? 21 O ? A ALA 139 ? A ALA 176 ? 1_555 CA ? B CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 81.6 ? 22 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 297 ? 1_555 94.9 ? 23 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 92.2 ? 24 O ? E HOH . ? A HOH 297 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 96.5 ? 25 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 88.1 ? 26 O ? E HOH . ? A HOH 297 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 175.9 ? 27 O ? E HOH . ? A HOH 298 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 299 ? 1_555 86.3 ? 28 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 174.0 ? 29 O ? E HOH . ? A HOH 297 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 88.4 ? 30 O ? E HOH . ? A HOH 298 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 92.4 ? 31 O ? E HOH . ? A HOH 299 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 300 ? 1_555 88.4 ? 32 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 301 ? 1_555 90.7 ? 33 O ? E HOH . ? A HOH 297 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 301 ? 1_555 86.9 ? 34 O ? E HOH . ? A HOH 298 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 301 ? 1_555 175.4 ? 35 O ? E HOH . ? A HOH 299 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 301 ? 1_555 90.2 ? 36 O ? E HOH . ? A HOH 300 ? 1_555 NI ? C NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 301 ? 1_555 84.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-29 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2021-10-13 6 'Structure model' 1 5 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_struct_conn_angle 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.value' 21 5 'Structure model' '_struct_conn.pdbx_dist_value' 22 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3LE0 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 31.790 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 31.790 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 1.3.2 'Fri May 5 14:40:40 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 ADSC Quantum ? ? ? ? 'data collection' ? ? ? # _pdbx_entry_details.entry_id 3LE0 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE FOR THE LECTIN DOMAIN OF LECTINOLYSIN WAS DERIVED FROM THE PUBLISHED PROTEIN SEQUENCE PUBLISHED BY FARRAND ET AL. (BIOCHEMISTRY, VOL. 47, 2008). ACCORDING TO THEIR SEQUENCING RESULTS AMINO ACIDS 67 AND 158 ARE THREONINE AND ASPARTATE, RESPECTIVELY. THE CORRECTNESS OF THR 67 AND ASP 158 WAS CONFIRMED IN THE ELECTRON DENSITY MAP. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 38 ? A GLU 1 2 1 Y 1 A GLN 39 ? A GLN 2 3 1 Y 1 A GLY 40 ? A GLY 3 4 1 Y 1 A ASN 41 ? A ASN 4 5 1 Y 1 A ARG 42 ? A ARG 5 6 1 Y 1 A PRO 43 ? A PRO 6 7 1 Y 1 A THR 186 ? A THR 149 8 1 Y 1 A GLN 187 ? A GLN 150 9 1 Y 1 A VAL 188 ? A VAL 151 10 1 Y 1 A GLY 189 ? A GLY 152 11 1 Y 1 A CYS 190 ? A CYS 153 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 GLN N N N N 89 GLN CA C N S 90 GLN C C N N 91 GLN O O N N 92 GLN CB C N N 93 GLN CG C N N 94 GLN CD C N N 95 GLN OE1 O N N 96 GLN NE2 N N N 97 GLN OXT O N N 98 GLN H H N N 99 GLN H2 H N N 100 GLN HA H N N 101 GLN HB2 H N N 102 GLN HB3 H N N 103 GLN HG2 H N N 104 GLN HG3 H N N 105 GLN HE21 H N N 106 GLN HE22 H N N 107 GLN HXT H N N 108 GLU N N N N 109 GLU CA C N S 110 GLU C C N N 111 GLU O O N N 112 GLU CB C N N 113 GLU CG C N N 114 GLU CD C N N 115 GLU OE1 O N N 116 GLU OE2 O N N 117 GLU OXT O N N 118 GLU H H N N 119 GLU H2 H N N 120 GLU HA H N N 121 GLU HB2 H N N 122 GLU HB3 H N N 123 GLU HG2 H N N 124 GLU HG3 H N N 125 GLU HE2 H N N 126 GLU HXT H N N 127 GLY N N N N 128 GLY CA C N N 129 GLY C C N N 130 GLY O O N N 131 GLY OXT O N N 132 GLY H H N N 133 GLY H2 H N N 134 GLY HA2 H N N 135 GLY HA3 H N N 136 GLY HXT H N N 137 GOL C1 C N N 138 GOL O1 O N N 139 GOL C2 C N N 140 GOL O2 O N N 141 GOL C3 C N N 142 GOL O3 O N N 143 GOL H11 H N N 144 GOL H12 H N N 145 GOL HO1 H N N 146 GOL H2 H N N 147 GOL HO2 H N N 148 GOL H31 H N N 149 GOL H32 H N N 150 GOL HO3 H N N 151 HIS N N N N 152 HIS CA C N S 153 HIS C C N N 154 HIS O O N N 155 HIS CB C N N 156 HIS CG C Y N 157 HIS ND1 N Y N 158 HIS CD2 C Y N 159 HIS CE1 C Y N 160 HIS NE2 N Y N 161 HIS OXT O N N 162 HIS H H N N 163 HIS H2 H N N 164 HIS HA H N N 165 HIS HB2 H N N 166 HIS HB3 H N N 167 HIS HD1 H N N 168 HIS HD2 H N N 169 HIS HE1 H N N 170 HIS HE2 H N N 171 HIS HXT H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 ILE N N N N 176 ILE CA C N S 177 ILE C C N N 178 ILE O O N N 179 ILE CB C N S 180 ILE CG1 C N N 181 ILE CG2 C N N 182 ILE CD1 C N N 183 ILE OXT O N N 184 ILE H H N N 185 ILE H2 H N N 186 ILE HA H N N 187 ILE HB H N N 188 ILE HG12 H N N 189 ILE HG13 H N N 190 ILE HG21 H N N 191 ILE HG22 H N N 192 ILE HG23 H N N 193 ILE HD11 H N N 194 ILE HD12 H N N 195 ILE HD13 H N N 196 ILE HXT H N N 197 LEU N N N N 198 LEU CA C N S 199 LEU C C N N 200 LEU O O N N 201 LEU CB C N N 202 LEU CG C N N 203 LEU CD1 C N N 204 LEU CD2 C N N 205 LEU OXT O N N 206 LEU H H N N 207 LEU H2 H N N 208 LEU HA H N N 209 LEU HB2 H N N 210 LEU HB3 H N N 211 LEU HG H N N 212 LEU HD11 H N N 213 LEU HD12 H N N 214 LEU HD13 H N N 215 LEU HD21 H N N 216 LEU HD22 H N N 217 LEU HD23 H N N 218 LEU HXT H N N 219 LYS N N N N 220 LYS CA C N S 221 LYS C C N N 222 LYS O O N N 223 LYS CB C N N 224 LYS CG C N N 225 LYS CD C N N 226 LYS CE C N N 227 LYS NZ N N N 228 LYS OXT O N N 229 LYS H H N N 230 LYS H2 H N N 231 LYS HA H N N 232 LYS HB2 H N N 233 LYS HB3 H N N 234 LYS HG2 H N N 235 LYS HG3 H N N 236 LYS HD2 H N N 237 LYS HD3 H N N 238 LYS HE2 H N N 239 LYS HE3 H N N 240 LYS HZ1 H N N 241 LYS HZ2 H N N 242 LYS HZ3 H N N 243 LYS HXT H N N 244 NI NI NI N N 245 PHE N N N N 246 PHE CA C N S 247 PHE C C N N 248 PHE O O N N 249 PHE CB C N N 250 PHE CG C Y N 251 PHE CD1 C Y N 252 PHE CD2 C Y N 253 PHE CE1 C Y N 254 PHE CE2 C Y N 255 PHE CZ C Y N 256 PHE OXT O N N 257 PHE H H N N 258 PHE H2 H N N 259 PHE HA H N N 260 PHE HB2 H N N 261 PHE HB3 H N N 262 PHE HD1 H N N 263 PHE HD2 H N N 264 PHE HE1 H N N 265 PHE HE2 H N N 266 PHE HZ H N N 267 PHE HXT H N N 268 PRO N N N N 269 PRO CA C N S 270 PRO C C N N 271 PRO O O N N 272 PRO CB C N N 273 PRO CG C N N 274 PRO CD C N N 275 PRO OXT O N N 276 PRO H H N N 277 PRO HA H N N 278 PRO HB2 H N N 279 PRO HB3 H N N 280 PRO HG2 H N N 281 PRO HG3 H N N 282 PRO HD2 H N N 283 PRO HD3 H N N 284 PRO HXT H N N 285 SER N N N N 286 SER CA C N S 287 SER C C N N 288 SER O O N N 289 SER CB C N N 290 SER OG O N N 291 SER OXT O N N 292 SER H H N N 293 SER H2 H N N 294 SER HA H N N 295 SER HB2 H N N 296 SER HB3 H N N 297 SER HG H N N 298 SER HXT H N N 299 THR N N N N 300 THR CA C N S 301 THR C C N N 302 THR O O N N 303 THR CB C N R 304 THR OG1 O N N 305 THR CG2 C N N 306 THR OXT O N N 307 THR H H N N 308 THR H2 H N N 309 THR HA H N N 310 THR HB H N N 311 THR HG1 H N N 312 THR HG21 H N N 313 THR HG22 H N N 314 THR HG23 H N N 315 THR HXT H N N 316 TRP N N N N 317 TRP CA C N S 318 TRP C C N N 319 TRP O O N N 320 TRP CB C N N 321 TRP CG C Y N 322 TRP CD1 C Y N 323 TRP CD2 C Y N 324 TRP NE1 N Y N 325 TRP CE2 C Y N 326 TRP CE3 C Y N 327 TRP CZ2 C Y N 328 TRP CZ3 C Y N 329 TRP CH2 C Y N 330 TRP OXT O N N 331 TRP H H N N 332 TRP H2 H N N 333 TRP HA H N N 334 TRP HB2 H N N 335 TRP HB3 H N N 336 TRP HD1 H N N 337 TRP HE1 H N N 338 TRP HE3 H N N 339 TRP HZ2 H N N 340 TRP HZ3 H N N 341 TRP HH2 H N N 342 TRP HXT H N N 343 TYR N N N N 344 TYR CA C N S 345 TYR C C N N 346 TYR O O N N 347 TYR CB C N N 348 TYR CG C Y N 349 TYR CD1 C Y N 350 TYR CD2 C Y N 351 TYR CE1 C Y N 352 TYR CE2 C Y N 353 TYR CZ C Y N 354 TYR OH O N N 355 TYR OXT O N N 356 TYR H H N N 357 TYR H2 H N N 358 TYR HA H N N 359 TYR HB2 H N N 360 TYR HB3 H N N 361 TYR HD1 H N N 362 TYR HD2 H N N 363 TYR HE1 H N N 364 TYR HE2 H N N 365 TYR HH H N N 366 TYR HXT H N N 367 VAL N N N N 368 VAL CA C N S 369 VAL C C N N 370 VAL O O N N 371 VAL CB C N N 372 VAL CG1 C N N 373 VAL CG2 C N N 374 VAL OXT O N N 375 VAL H H N N 376 VAL H2 H N N 377 VAL HA H N N 378 VAL HB H N N 379 VAL HG11 H N N 380 VAL HG12 H N N 381 VAL HG13 H N N 382 VAL HG21 H N N 383 VAL HG22 H N N 384 VAL HG23 H N N 385 VAL HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 PHE N CA sing N N 231 PHE N H sing N N 232 PHE N H2 sing N N 233 PHE CA C sing N N 234 PHE CA CB sing N N 235 PHE CA HA sing N N 236 PHE C O doub N N 237 PHE C OXT sing N N 238 PHE CB CG sing N N 239 PHE CB HB2 sing N N 240 PHE CB HB3 sing N N 241 PHE CG CD1 doub Y N 242 PHE CG CD2 sing Y N 243 PHE CD1 CE1 sing Y N 244 PHE CD1 HD1 sing N N 245 PHE CD2 CE2 doub Y N 246 PHE CD2 HD2 sing N N 247 PHE CE1 CZ doub Y N 248 PHE CE1 HE1 sing N N 249 PHE CE2 CZ sing Y N 250 PHE CE2 HE2 sing N N 251 PHE CZ HZ sing N N 252 PHE OXT HXT sing N N 253 PRO N CA sing N N 254 PRO N CD sing N N 255 PRO N H sing N N 256 PRO CA C sing N N 257 PRO CA CB sing N N 258 PRO CA HA sing N N 259 PRO C O doub N N 260 PRO C OXT sing N N 261 PRO CB CG sing N N 262 PRO CB HB2 sing N N 263 PRO CB HB3 sing N N 264 PRO CG CD sing N N 265 PRO CG HG2 sing N N 266 PRO CG HG3 sing N N 267 PRO CD HD2 sing N N 268 PRO CD HD3 sing N N 269 PRO OXT HXT sing N N 270 SER N CA sing N N 271 SER N H sing N N 272 SER N H2 sing N N 273 SER CA C sing N N 274 SER CA CB sing N N 275 SER CA HA sing N N 276 SER C O doub N N 277 SER C OXT sing N N 278 SER CB OG sing N N 279 SER CB HB2 sing N N 280 SER CB HB3 sing N N 281 SER OG HG sing N N 282 SER OXT HXT sing N N 283 THR N CA sing N N 284 THR N H sing N N 285 THR N H2 sing N N 286 THR CA C sing N N 287 THR CA CB sing N N 288 THR CA HA sing N N 289 THR C O doub N N 290 THR C OXT sing N N 291 THR CB OG1 sing N N 292 THR CB CG2 sing N N 293 THR CB HB sing N N 294 THR OG1 HG1 sing N N 295 THR CG2 HG21 sing N N 296 THR CG2 HG22 sing N N 297 THR CG2 HG23 sing N N 298 THR OXT HXT sing N N 299 TRP N CA sing N N 300 TRP N H sing N N 301 TRP N H2 sing N N 302 TRP CA C sing N N 303 TRP CA CB sing N N 304 TRP CA HA sing N N 305 TRP C O doub N N 306 TRP C OXT sing N N 307 TRP CB CG sing N N 308 TRP CB HB2 sing N N 309 TRP CB HB3 sing N N 310 TRP CG CD1 doub Y N 311 TRP CG CD2 sing Y N 312 TRP CD1 NE1 sing Y N 313 TRP CD1 HD1 sing N N 314 TRP CD2 CE2 doub Y N 315 TRP CD2 CE3 sing Y N 316 TRP NE1 CE2 sing Y N 317 TRP NE1 HE1 sing N N 318 TRP CE2 CZ2 sing Y N 319 TRP CE3 CZ3 doub Y N 320 TRP CE3 HE3 sing N N 321 TRP CZ2 CH2 doub Y N 322 TRP CZ2 HZ2 sing N N 323 TRP CZ3 CH2 sing Y N 324 TRP CZ3 HZ3 sing N N 325 TRP CH2 HH2 sing N N 326 TRP OXT HXT sing N N 327 TYR N CA sing N N 328 TYR N H sing N N 329 TYR N H2 sing N N 330 TYR CA C sing N N 331 TYR CA CB sing N N 332 TYR CA HA sing N N 333 TYR C O doub N N 334 TYR C OXT sing N N 335 TYR CB CG sing N N 336 TYR CB HB2 sing N N 337 TYR CB HB3 sing N N 338 TYR CG CD1 doub Y N 339 TYR CG CD2 sing Y N 340 TYR CD1 CE1 sing Y N 341 TYR CD1 HD1 sing N N 342 TYR CD2 CE2 doub Y N 343 TYR CD2 HD2 sing N N 344 TYR CE1 CZ doub Y N 345 TYR CE1 HE1 sing N N 346 TYR CE2 CZ sing Y N 347 TYR CE2 HE2 sing N N 348 TYR CZ OH sing N N 349 TYR OH HH sing N N 350 TYR OXT HXT sing N N 351 VAL N CA sing N N 352 VAL N H sing N N 353 VAL N H2 sing N N 354 VAL CA C sing N N 355 VAL CA CB sing N N 356 VAL CA HA sing N N 357 VAL C O doub N N 358 VAL C OXT sing N N 359 VAL CB CG1 sing N N 360 VAL CB CG2 sing N N 361 VAL CB HB sing N N 362 VAL CG1 HG11 sing N N 363 VAL CG1 HG12 sing N N 364 VAL CG1 HG13 sing N N 365 VAL CG2 HG21 sing N N 366 VAL CG2 HG22 sing N N 367 VAL CG2 HG23 sing N N 368 VAL OXT HXT sing N N 369 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'NICKEL (II) ION' NI 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2J1R _pdbx_initial_refinement_model.details 'PDB entry 2J1R' #