data_3LEI # _entry.id 3LEI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LEI pdb_00003lei 10.2210/pdb3lei/pdb RCSB RCSB057178 ? ? WWPDB D_1000057178 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3LEO 'The same protein complexed with glycerol' unspecified PDB 3LEG 'The same protein complexed with Lewis Y antigen' unspecified PDB 3LEK 'The same protein complexed with Lewis B Antigen' unspecified # _pdbx_database_status.entry_id 3LEI _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-14 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Feil, S.C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Structure of the lectin regulatory domain of the cholesterol-dependent cytolysin lectinolysin reveals the basis for its lewis antigen specificity. ; _citation.journal_abbrev Structure _citation.journal_volume 20 _citation.page_first 248 _citation.page_last 258 _citation.year 2012 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22325774 _citation.pdbx_database_id_DOI 10.1016/j.str.2011.11.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feil, S.C.' 1 ? primary 'Lawrence, S.' 2 ? primary 'Mulhern, T.D.' 3 ? primary 'Holien, J.K.' 4 ? primary 'Hotze, E.M.' 5 ? primary 'Farrand, S.' 6 ? primary 'Tweten, R.K.' 7 ? primary 'Parker, M.W.' 8 ? # _cell.entry_id 3LEI _cell.length_a 67.010 _cell.length_b 67.010 _cell.length_c 97.800 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LEI _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Platelet aggregation factor Sm-hPAF' 16867.479 1 ? Q190C 'Mutant of the lectin domain of lectinolysin, residues 43 to 185' ? 2 non-polymer man alpha-L-fucopyranose 164.156 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 5 water nat water 18.015 144 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_seq_one_letter_code_can ;EQGNRPVETENIARGKQASQSSTAYGGAATRAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKDARYVKVELKTKNTPLSLAEVEVFRSATTQVGC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLN n 1 3 GLY n 1 4 ASN n 1 5 ARG n 1 6 PRO n 1 7 VAL n 1 8 GLU n 1 9 THR n 1 10 GLU n 1 11 ASN n 1 12 ILE n 1 13 ALA n 1 14 ARG n 1 15 GLY n 1 16 LYS n 1 17 GLN n 1 18 ALA n 1 19 SER n 1 20 GLN n 1 21 SER n 1 22 SER n 1 23 THR n 1 24 ALA n 1 25 TYR n 1 26 GLY n 1 27 GLY n 1 28 ALA n 1 29 ALA n 1 30 THR n 1 31 ARG n 1 32 ALA n 1 33 VAL n 1 34 ASP n 1 35 GLY n 1 36 ASN n 1 37 VAL n 1 38 ASP n 1 39 SER n 1 40 ASP n 1 41 TYR n 1 42 GLY n 1 43 HIS n 1 44 HIS n 1 45 SER n 1 46 VAL n 1 47 THR n 1 48 HIS n 1 49 THR n 1 50 ASN n 1 51 PHE n 1 52 GLU n 1 53 ASP n 1 54 ASN n 1 55 ALA n 1 56 TRP n 1 57 TRP n 1 58 GLN n 1 59 VAL n 1 60 ASP n 1 61 LEU n 1 62 GLY n 1 63 LYS n 1 64 THR n 1 65 GLU n 1 66 ASN n 1 67 VAL n 1 68 GLY n 1 69 LYS n 1 70 VAL n 1 71 LYS n 1 72 LEU n 1 73 TYR n 1 74 ASN n 1 75 ARG n 1 76 GLY n 1 77 ASP n 1 78 GLY n 1 79 ASN n 1 80 VAL n 1 81 ALA n 1 82 ASN n 1 83 ARG n 1 84 LEU n 1 85 SER n 1 86 ASN n 1 87 PHE n 1 88 ASP n 1 89 VAL n 1 90 VAL n 1 91 LEU n 1 92 LEU n 1 93 ASN n 1 94 GLU n 1 95 ALA n 1 96 LYS n 1 97 GLN n 1 98 GLU n 1 99 VAL n 1 100 ALA n 1 101 ARG n 1 102 GLN n 1 103 HIS n 1 104 PHE n 1 105 ASP n 1 106 SER n 1 107 LEU n 1 108 ASN n 1 109 GLY n 1 110 LYS n 1 111 ALA n 1 112 GLU n 1 113 LEU n 1 114 GLU n 1 115 VAL n 1 116 PHE n 1 117 PHE n 1 118 THR n 1 119 ALA n 1 120 LYS n 1 121 ASP n 1 122 ALA n 1 123 ARG n 1 124 TYR n 1 125 VAL n 1 126 LYS n 1 127 VAL n 1 128 GLU n 1 129 LEU n 1 130 LYS n 1 131 THR n 1 132 LYS n 1 133 ASN n 1 134 THR n 1 135 PRO n 1 136 LEU n 1 137 SER n 1 138 LEU n 1 139 ALA n 1 140 GLU n 1 141 VAL n 1 142 GLU n 1 143 VAL n 1 144 PHE n 1 145 ARG n 1 146 SER n 1 147 ALA n 1 148 THR n 1 149 THR n 1 150 GLN n 1 151 VAL n 1 152 GLY n 1 153 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene samhpaf _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Nm-65 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus mitis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 28037 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSg7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2PHL4_STRMT _struct_ref.pdbx_db_accession Q2PHL4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EQGNRPVETENIARGKQASQSSTAYGGAAARAVDGNVDSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGNV ANRLSNFDVVLLNEAKQEVARQHFDSLNGKAELEVFFTAKAARYVKVELKTKNTPLSLAEVEVFRSATTQVGQ ; _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LEI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 153 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2PHL4 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 37 _struct_ref_seq.pdbx_auth_seq_align_end 190 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LEI THR A 30 ? UNP Q2PHL4 ALA 67 'SEE REMARK 999' 67 1 1 3LEI ASP A 121 ? UNP Q2PHL4 ALA 158 'SEE REMARK 999' 158 2 1 3LEI CYS A 153 ? UNP Q2PHL4 GLN 190 'engineered mutation' 190 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose 'alpha-L-fucose; 6-deoxy-alpha-L-galactopyranose; L-fucose; fucose' 'C6 H12 O5' 164.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LEI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.24 _exptl_crystal.density_percent_sol 61.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2M MgSO4, 100mM Tris, pH 8.5, vapor diffusion, hanging drop, temperature 294K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2008-04-08 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007 HF' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3LEI _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 42.64 _reflns.d_resolution_high 1.900 _reflns.number_obs 18008 _reflns.number_all ? _reflns.percent_possible_obs 98.600 _reflns.pdbx_Rmerge_I_obs 0.124 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.600 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.610 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_unique_obs _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.90 1.97 87.70 0.429 ? 4.0 5.78 ? ? ? ? ? ? 1 1 1.97 2.05 99.00 0.368 ? 4.4 7.87 ? ? ? ? ? ? 2 1 2.05 2.14 100.00 0.342 ? 5.2 9.08 ? ? ? ? ? ? 3 1 2.14 2.25 99.90 0.348 ? 5.5 8.95 ? ? ? ? ? ? 4 1 2.25 2.39 100.00 0.279 ? 7.0 8.92 ? ? ? ? ? ? 5 1 2.39 2.58 100.00 0.230 ? 6.9 9.17 ? ? ? ? ? ? 6 1 2.58 2.84 100.00 0.173 ? 8.6 9.24 ? ? ? ? ? ? 7 1 2.84 3.25 99.90 0.112 ? 12.2 9.16 ? ? ? ? ? ? 8 1 3.25 4.09 99.90 0.088 ? 15.9 8.95 ? ? ? ? ? ? 9 1 4.09 55.28 99.50 0.062 ? 21.9 8.55 ? ? ? ? ? ? 10 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3LEI _refine.ls_number_reflns_obs 17085 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 42.64 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 98.62 _refine.ls_R_factor_obs 0.20183 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19947 _refine.ls_R_factor_R_free 0.24690 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 919 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.35 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc 0.941 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 23.803 _refine.aniso_B[1][1] -0.11 _refine.aniso_B[2][2] -0.11 _refine.aniso_B[3][3] 0.22 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 3LEO _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.126 _refine.pdbx_overall_ESU_R_Free 0.131 _refine.overall_SU_ML 0.090 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.073 _refine.overall_SU_R_Cruickshank_DPI 0.126 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1114 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 1271 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 42.64 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.017 0.021 ? 1144 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.448 1.928 ? 1549 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.892 5.000 ? 142 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.005 25.000 ? 60 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.560 15.000 ? 187 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 15.016 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.125 0.200 ? 175 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 873 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.916 1.500 ? 706 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.598 2.000 ? 1128 'X-RAY DIFFRACTION' ? r_scbond_it 2.561 3.000 ? 438 'X-RAY DIFFRACTION' ? r_scangle_it 3.982 4.500 ? 421 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.900 _refine_ls_shell.d_res_low 1.949 _refine_ls_shell.number_reflns_R_work 1087 _refine_ls_shell.R_factor_R_work 0.295 _refine_ls_shell.percent_reflns_obs 86.55 _refine_ls_shell.R_factor_R_free 0.311 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3LEI _struct.title 'Lectin Domain of Lectinolysin complexed with Fucose' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LEI _struct_keywords.text 'lectin domain of lectinolysin, fucose, BLOOD CLOTTING, nickel' _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details 'biological unit is the same as asym.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 28 ? ASP A 34 ? ALA A 65 ASP A 71 5 ? 7 HELX_P HELX_P2 2 ASP A 40 ? HIS A 44 ? ASP A 77 HIS A 81 5 ? 5 HELX_P HELX_P3 3 VAL A 80 ? LEU A 84 ? VAL A 117 LEU A 121 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C CA . CA ? ? ? 1_555 A ARG 31 O ? ? A CA 1 A ARG 68 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc2 metalc ? ? C CA . CA ? ? ? 1_555 A ASP 34 OD1 ? ? A CA 1 A ASP 71 1_555 ? ? ? ? ? ? ? 2.489 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 A ASN 36 O ? ? A CA 1 A ASN 73 1_555 ? ? ? ? ? ? ? 2.280 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 A SER 45 OG ? ? A CA 1 A SER 82 1_555 ? ? ? ? ? ? ? 2.414 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 A SER 45 O ? ? A CA 1 A SER 82 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 A ALA 139 O ? ? A CA 1 A ALA 176 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 A GLU 140 OE1 ? ? A CA 1 A GLU 177 1_555 ? ? ? ? ? ? ? 2.468 ? ? metalc8 metalc ? ? A HIS 43 NE2 ? ? ? 1_555 D NI . NI ? ? A HIS 80 A NI 191 1_555 ? ? ? ? ? ? ? 2.160 ? ? metalc9 metalc ? ? D NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 294 1_555 ? ? ? ? ? ? ? 2.031 ? ? metalc10 metalc ? ? D NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 295 1_555 ? ? ? ? ? ? ? 2.029 ? ? metalc11 metalc ? ? D NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 296 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc12 metalc ? ? D NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 297 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc13 metalc ? ? D NI . NI ? ? ? 1_555 E HOH . O ? ? A NI 191 A HOH 298 1_555 ? ? ? ? ? ? ? 2.088 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 A 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 A 3 GLU A 112 ? LEU A 129 ? GLU A 149 LEU A 166 A 4 PHE A 87 ? LEU A 92 ? PHE A 124 LEU A 129 A 5 GLU A 98 ? PHE A 104 ? GLU A 135 PHE A 141 B 1 GLN A 17 ? GLN A 20 ? GLN A 54 GLN A 57 B 2 TRP A 56 ? ASN A 74 ? TRP A 93 ASN A 111 B 3 LEU A 138 ? ARG A 145 ? LEU A 175 ARG A 182 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 A 2 3 N LEU A 61 ? N LEU A 98 O ARG A 123 ? O ARG A 160 A 3 4 O LYS A 126 ? O LYS A 163 N VAL A 90 ? N VAL A 127 A 4 5 N LEU A 91 ? N LEU A 128 O VAL A 99 ? O VAL A 136 B 1 2 N SER A 19 ? N SER A 56 O GLN A 58 ? O GLN A 95 B 2 3 N LYS A 71 ? N LYS A 108 O GLU A 142 ? O GLU A 179 # _atom_sites.entry_id 3LEI _atom_sites.fract_transf_matrix[1][1] 0.014923 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014923 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010225 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N NI O # loop_ _database_PDB_caveat.text 'FUC A 1186 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 37 ? ? ? A . n A 1 2 GLN 2 38 ? ? ? A . n A 1 3 GLY 3 39 ? ? ? A . n A 1 4 ASN 4 40 ? ? ? A . n A 1 5 ARG 5 41 ? ? ? A . n A 1 6 PRO 6 43 43 PRO PRO A . n A 1 7 VAL 7 44 44 VAL VAL A . n A 1 8 GLU 8 45 45 GLU GLU A . n A 1 9 THR 9 46 46 THR THR A . n A 1 10 GLU 10 47 47 GLU GLU A . n A 1 11 ASN 11 48 48 ASN ASN A . n A 1 12 ILE 12 49 49 ILE ILE A . n A 1 13 ALA 13 50 50 ALA ALA A . n A 1 14 ARG 14 51 51 ARG ARG A . n A 1 15 GLY 15 52 52 GLY GLY A . n A 1 16 LYS 16 53 53 LYS LYS A . n A 1 17 GLN 17 54 54 GLN GLN A . n A 1 18 ALA 18 55 55 ALA ALA A . n A 1 19 SER 19 56 56 SER SER A . n A 1 20 GLN 20 57 57 GLN GLN A . n A 1 21 SER 21 58 58 SER SER A . n A 1 22 SER 22 59 59 SER SER A . n A 1 23 THR 23 60 60 THR THR A . n A 1 24 ALA 24 61 61 ALA ALA A . n A 1 25 TYR 25 62 62 TYR TYR A . n A 1 26 GLY 26 63 63 GLY GLY A . n A 1 27 GLY 27 64 64 GLY GLY A . n A 1 28 ALA 28 65 65 ALA ALA A . n A 1 29 ALA 29 66 66 ALA ALA A . n A 1 30 THR 30 67 67 THR THR A . n A 1 31 ARG 31 68 68 ARG ARG A . n A 1 32 ALA 32 69 69 ALA ALA A . n A 1 33 VAL 33 70 70 VAL VAL A . n A 1 34 ASP 34 71 71 ASP ASP A . n A 1 35 GLY 35 72 72 GLY GLY A . n A 1 36 ASN 36 73 73 ASN ASN A . n A 1 37 VAL 37 74 74 VAL VAL A . n A 1 38 ASP 38 75 75 ASP ASP A . n A 1 39 SER 39 76 76 SER SER A . n A 1 40 ASP 40 77 77 ASP ASP A . n A 1 41 TYR 41 78 78 TYR TYR A . n A 1 42 GLY 42 79 79 GLY GLY A . n A 1 43 HIS 43 80 80 HIS HIS A . n A 1 44 HIS 44 81 81 HIS HIS A . n A 1 45 SER 45 82 82 SER SER A . n A 1 46 VAL 46 83 83 VAL VAL A . n A 1 47 THR 47 84 84 THR THR A . n A 1 48 HIS 48 85 85 HIS HIS A . n A 1 49 THR 49 86 86 THR THR A . n A 1 50 ASN 50 87 87 ASN ASN A . n A 1 51 PHE 51 88 88 PHE PHE A . n A 1 52 GLU 52 89 89 GLU GLU A . n A 1 53 ASP 53 90 90 ASP ASP A . n A 1 54 ASN 54 91 91 ASN ASN A . n A 1 55 ALA 55 92 92 ALA ALA A . n A 1 56 TRP 56 93 93 TRP TRP A . n A 1 57 TRP 57 94 94 TRP TRP A . n A 1 58 GLN 58 95 95 GLN GLN A . n A 1 59 VAL 59 96 96 VAL VAL A . n A 1 60 ASP 60 97 97 ASP ASP A . n A 1 61 LEU 61 98 98 LEU LEU A . n A 1 62 GLY 62 99 99 GLY GLY A . n A 1 63 LYS 63 100 100 LYS LYS A . n A 1 64 THR 64 101 101 THR THR A . n A 1 65 GLU 65 102 102 GLU GLU A . n A 1 66 ASN 66 103 103 ASN ASN A . n A 1 67 VAL 67 104 104 VAL VAL A . n A 1 68 GLY 68 105 105 GLY GLY A . n A 1 69 LYS 69 106 106 LYS LYS A . n A 1 70 VAL 70 107 107 VAL VAL A . n A 1 71 LYS 71 108 108 LYS LYS A . n A 1 72 LEU 72 109 109 LEU LEU A . n A 1 73 TYR 73 110 110 TYR TYR A . n A 1 74 ASN 74 111 111 ASN ASN A . n A 1 75 ARG 75 112 112 ARG ARG A . n A 1 76 GLY 76 113 113 GLY GLY A . n A 1 77 ASP 77 114 114 ASP ASP A . n A 1 78 GLY 78 115 115 GLY GLY A . n A 1 79 ASN 79 116 116 ASN ASN A . n A 1 80 VAL 80 117 117 VAL VAL A . n A 1 81 ALA 81 118 118 ALA ALA A . n A 1 82 ASN 82 119 119 ASN ASN A . n A 1 83 ARG 83 120 120 ARG ARG A . n A 1 84 LEU 84 121 121 LEU LEU A . n A 1 85 SER 85 122 122 SER SER A . n A 1 86 ASN 86 123 123 ASN ASN A . n A 1 87 PHE 87 124 124 PHE PHE A . n A 1 88 ASP 88 125 125 ASP ASP A . n A 1 89 VAL 89 126 126 VAL VAL A . n A 1 90 VAL 90 127 127 VAL VAL A . n A 1 91 LEU 91 128 128 LEU LEU A . n A 1 92 LEU 92 129 129 LEU LEU A . n A 1 93 ASN 93 130 130 ASN ASN A . n A 1 94 GLU 94 131 131 GLU GLU A . n A 1 95 ALA 95 132 132 ALA ALA A . n A 1 96 LYS 96 133 133 LYS LYS A . n A 1 97 GLN 97 134 134 GLN GLN A . n A 1 98 GLU 98 135 135 GLU GLU A . n A 1 99 VAL 99 136 136 VAL VAL A . n A 1 100 ALA 100 137 137 ALA ALA A . n A 1 101 ARG 101 138 138 ARG ARG A . n A 1 102 GLN 102 139 139 GLN GLN A . n A 1 103 HIS 103 140 140 HIS HIS A . n A 1 104 PHE 104 141 141 PHE PHE A . n A 1 105 ASP 105 142 142 ASP ASP A . n A 1 106 SER 106 143 143 SER SER A . n A 1 107 LEU 107 144 144 LEU LEU A . n A 1 108 ASN 108 145 145 ASN ASN A . n A 1 109 GLY 109 146 146 GLY GLY A . n A 1 110 LYS 110 147 147 LYS LYS A . n A 1 111 ALA 111 148 148 ALA ALA A . n A 1 112 GLU 112 149 149 GLU GLU A . n A 1 113 LEU 113 150 150 LEU LEU A . n A 1 114 GLU 114 151 151 GLU GLU A . n A 1 115 VAL 115 152 152 VAL VAL A . n A 1 116 PHE 116 153 153 PHE PHE A . n A 1 117 PHE 117 154 154 PHE PHE A . n A 1 118 THR 118 155 155 THR THR A . n A 1 119 ALA 119 156 156 ALA ALA A . n A 1 120 LYS 120 157 157 LYS LYS A . n A 1 121 ASP 121 158 158 ASP ASP A . n A 1 122 ALA 122 159 159 ALA ALA A . n A 1 123 ARG 123 160 160 ARG ARG A . n A 1 124 TYR 124 161 161 TYR TYR A . n A 1 125 VAL 125 162 162 VAL VAL A . n A 1 126 LYS 126 163 163 LYS LYS A . n A 1 127 VAL 127 164 164 VAL VAL A . n A 1 128 GLU 128 165 165 GLU GLU A . n A 1 129 LEU 129 166 166 LEU LEU A . n A 1 130 LYS 130 167 167 LYS LYS A . n A 1 131 THR 131 168 168 THR THR A . n A 1 132 LYS 132 169 169 LYS LYS A . n A 1 133 ASN 133 170 170 ASN ASN A . n A 1 134 THR 134 171 171 THR THR A . n A 1 135 PRO 135 172 172 PRO PRO A . n A 1 136 LEU 136 173 173 LEU LEU A . n A 1 137 SER 137 174 174 SER SER A . n A 1 138 LEU 138 175 175 LEU LEU A . n A 1 139 ALA 139 176 176 ALA ALA A . n A 1 140 GLU 140 177 177 GLU GLU A . n A 1 141 VAL 141 178 178 VAL VAL A . n A 1 142 GLU 142 179 179 GLU GLU A . n A 1 143 VAL 143 180 180 VAL VAL A . n A 1 144 PHE 144 181 181 PHE PHE A . n A 1 145 ARG 145 182 182 ARG ARG A . n A 1 146 SER 146 183 183 SER SER A . n A 1 147 ALA 147 184 184 ALA ALA A . n A 1 148 THR 148 185 185 THR THR A . n A 1 149 THR 149 186 ? ? ? A . n A 1 150 GLN 150 187 ? ? ? A . n A 1 151 VAL 151 188 ? ? ? A . n A 1 152 GLY 152 189 ? ? ? A . n A 1 153 CYS 153 190 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FUC 1 1186 1186 FUC FUC A . C 3 CA 1 1 1 CA CA A . D 4 NI 1 191 191 NI NI A . E 5 HOH 1 2 2 HOH HOH A . E 5 HOH 2 3 3 HOH HOH A . E 5 HOH 3 4 4 HOH HOH A . E 5 HOH 4 5 5 HOH HOH A . E 5 HOH 5 6 6 HOH HOH A . E 5 HOH 6 7 7 HOH HOH A . E 5 HOH 7 8 8 HOH HOH A . E 5 HOH 8 9 9 HOH HOH A . E 5 HOH 9 10 10 HOH HOH A . E 5 HOH 10 11 11 HOH HOH A . E 5 HOH 11 12 12 HOH HOH A . E 5 HOH 12 13 13 HOH HOH A . E 5 HOH 13 14 14 HOH HOH A . E 5 HOH 14 15 15 HOH HOH A . E 5 HOH 15 16 16 HOH HOH A . E 5 HOH 16 17 17 HOH HOH A . E 5 HOH 17 18 18 HOH HOH A . E 5 HOH 18 19 19 HOH HOH A . E 5 HOH 19 20 20 HOH HOH A . E 5 HOH 20 21 21 HOH HOH A . E 5 HOH 21 22 22 HOH HOH A . E 5 HOH 22 23 23 HOH HOH A . E 5 HOH 23 24 24 HOH HOH A . E 5 HOH 24 25 25 HOH HOH A . E 5 HOH 25 26 26 HOH HOH A . E 5 HOH 26 27 27 HOH HOH A . E 5 HOH 27 28 28 HOH HOH A . E 5 HOH 28 29 29 HOH HOH A . E 5 HOH 29 30 30 HOH HOH A . E 5 HOH 30 31 31 HOH HOH A . E 5 HOH 31 32 32 HOH HOH A . E 5 HOH 32 33 33 HOH HOH A . E 5 HOH 33 34 34 HOH HOH A . E 5 HOH 34 35 35 HOH HOH A . E 5 HOH 35 36 36 HOH HOH A . E 5 HOH 36 192 192 HOH HOH A . E 5 HOH 37 193 193 HOH HOH A . E 5 HOH 38 194 194 HOH HOH A . E 5 HOH 39 195 195 HOH HOH A . E 5 HOH 40 196 196 HOH HOH A . E 5 HOH 41 197 197 HOH HOH A . E 5 HOH 42 198 198 HOH HOH A . E 5 HOH 43 199 199 HOH HOH A . E 5 HOH 44 200 200 HOH HOH A . E 5 HOH 45 201 201 HOH HOH A . E 5 HOH 46 202 202 HOH HOH A . E 5 HOH 47 203 203 HOH HOH A . E 5 HOH 48 204 204 HOH HOH A . E 5 HOH 49 205 205 HOH HOH A . E 5 HOH 50 206 206 HOH HOH A . E 5 HOH 51 207 207 HOH HOH A . E 5 HOH 52 208 208 HOH HOH A . E 5 HOH 53 209 209 HOH HOH A . E 5 HOH 54 210 210 HOH HOH A . E 5 HOH 55 211 211 HOH HOH A . E 5 HOH 56 212 212 HOH HOH A . E 5 HOH 57 213 213 HOH HOH A . E 5 HOH 58 214 214 HOH HOH A . E 5 HOH 59 215 215 HOH HOH A . E 5 HOH 60 216 216 HOH HOH A . E 5 HOH 61 217 217 HOH HOH A . E 5 HOH 62 218 218 HOH HOH A . E 5 HOH 63 219 219 HOH HOH A . E 5 HOH 64 220 220 HOH HOH A . E 5 HOH 65 221 221 HOH HOH A . E 5 HOH 66 222 222 HOH HOH A . E 5 HOH 67 223 223 HOH HOH A . E 5 HOH 68 224 224 HOH HOH A . E 5 HOH 69 225 225 HOH HOH A . E 5 HOH 70 226 226 HOH HOH A . E 5 HOH 71 227 227 HOH HOH A . E 5 HOH 72 228 228 HOH HOH A . E 5 HOH 73 229 229 HOH HOH A . E 5 HOH 74 230 230 HOH HOH A . E 5 HOH 75 231 231 HOH HOH A . E 5 HOH 76 232 232 HOH HOH A . E 5 HOH 77 233 233 HOH HOH A . E 5 HOH 78 234 234 HOH HOH A . E 5 HOH 79 235 235 HOH HOH A . E 5 HOH 80 236 236 HOH HOH A . E 5 HOH 81 237 237 HOH HOH A . E 5 HOH 82 238 238 HOH HOH A . E 5 HOH 83 239 239 HOH HOH A . E 5 HOH 84 240 240 HOH HOH A . E 5 HOH 85 241 241 HOH HOH A . E 5 HOH 86 242 242 HOH HOH A . E 5 HOH 87 243 243 HOH HOH A . E 5 HOH 88 244 244 HOH HOH A . E 5 HOH 89 245 245 HOH HOH A . E 5 HOH 90 246 246 HOH HOH A . E 5 HOH 91 247 247 HOH HOH A . E 5 HOH 92 248 248 HOH HOH A . E 5 HOH 93 249 249 HOH HOH A . E 5 HOH 94 250 250 HOH HOH A . E 5 HOH 95 251 251 HOH HOH A . E 5 HOH 96 252 252 HOH HOH A . E 5 HOH 97 253 253 HOH HOH A . E 5 HOH 98 254 254 HOH HOH A . E 5 HOH 99 255 255 HOH HOH A . E 5 HOH 100 256 256 HOH HOH A . E 5 HOH 101 257 257 HOH HOH A . E 5 HOH 102 258 258 HOH HOH A . E 5 HOH 103 259 259 HOH HOH A . E 5 HOH 104 260 260 HOH HOH A . E 5 HOH 105 261 261 HOH HOH A . E 5 HOH 106 262 262 HOH HOH A . E 5 HOH 107 263 263 HOH HOH A . E 5 HOH 108 264 264 HOH HOH A . E 5 HOH 109 265 265 HOH HOH A . E 5 HOH 110 266 266 HOH HOH A . E 5 HOH 111 267 267 HOH HOH A . E 5 HOH 112 268 268 HOH HOH A . E 5 HOH 113 269 269 HOH HOH A . E 5 HOH 114 270 270 HOH HOH A . E 5 HOH 115 271 271 HOH HOH A . E 5 HOH 116 272 272 HOH HOH A . E 5 HOH 117 273 273 HOH HOH A . E 5 HOH 118 274 274 HOH HOH A . E 5 HOH 119 275 275 HOH HOH A . E 5 HOH 120 276 276 HOH HOH A . E 5 HOH 121 277 277 HOH HOH A . E 5 HOH 122 278 278 HOH HOH A . E 5 HOH 123 279 279 HOH HOH A . E 5 HOH 124 280 280 HOH HOH A . E 5 HOH 125 281 281 HOH HOH A . E 5 HOH 126 282 282 HOH HOH A . E 5 HOH 127 283 283 HOH HOH A . E 5 HOH 128 284 284 HOH HOH A . E 5 HOH 129 285 285 HOH HOH A . E 5 HOH 130 286 286 HOH HOH A . E 5 HOH 131 287 287 HOH HOH A . E 5 HOH 132 288 288 HOH HOH A . E 5 HOH 133 289 289 HOH HOH A . E 5 HOH 134 290 290 HOH HOH A . E 5 HOH 135 291 291 HOH HOH A . E 5 HOH 136 292 292 HOH HOH A . E 5 HOH 137 293 293 HOH HOH A . E 5 HOH 138 294 294 HOH HOH A . E 5 HOH 139 295 295 HOH HOH A . E 5 HOH 140 296 296 HOH HOH A . E 5 HOH 141 297 297 HOH HOH A . E 5 HOH 142 298 298 HOH HOH A . E 5 HOH 143 299 299 HOH HOH A . E 5 HOH 144 300 300 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 74.9 ? 2 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 163.7 ? 3 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ASN 36 ? A ASN 73 ? 1_555 91.5 ? 4 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 100.5 ? 5 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 70.2 ? 6 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OG ? A SER 45 ? A SER 82 ? 1_555 82.8 ? 7 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 80.6 ? 8 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 127.8 ? 9 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 115.4 ? 10 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A SER 45 ? A SER 82 ? 1_555 70.0 ? 11 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 96.5 ? 12 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 157.4 ? 13 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 92.8 ? 14 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 132.3 ? 15 O ? A SER 45 ? A SER 82 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 O ? A ALA 139 ? A ALA 176 ? 1_555 69.4 ? 16 O ? A ARG 31 ? A ARG 68 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 88.5 ? 17 OD1 ? A ASP 34 ? A ASP 71 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 74.8 ? 18 O ? A ASN 36 ? A ASN 73 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 79.1 ? 19 OG ? A SER 45 ? A SER 82 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 139.9 ? 20 O ? A SER 45 ? A SER 82 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 149.9 ? 21 O ? A ALA 139 ? A ALA 176 ? 1_555 CA ? C CA . ? A CA 1 ? 1_555 OE1 ? A GLU 140 ? A GLU 177 ? 1_555 84.2 ? 22 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 294 ? 1_555 91.5 ? 23 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 295 ? 1_555 92.3 ? 24 O ? E HOH . ? A HOH 294 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 295 ? 1_555 175.0 ? 25 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 296 ? 1_555 89.5 ? 26 O ? E HOH . ? A HOH 294 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 296 ? 1_555 87.7 ? 27 O ? E HOH . ? A HOH 295 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 296 ? 1_555 95.5 ? 28 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 297 ? 1_555 174.5 ? 29 O ? E HOH . ? A HOH 294 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 297 ? 1_555 84.2 ? 30 O ? E HOH . ? A HOH 295 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 297 ? 1_555 91.8 ? 31 O ? E HOH . ? A HOH 296 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 297 ? 1_555 93.7 ? 32 NE2 ? A HIS 43 ? A HIS 80 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 89.2 ? 33 O ? E HOH . ? A HOH 294 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 88.7 ? 34 O ? E HOH . ? A HOH 295 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 88.1 ? 35 O ? E HOH . ? A HOH 296 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 176.2 ? 36 O ? E HOH . ? A HOH 297 ? 1_555 NI ? D NI . ? A NI 191 ? 1_555 O ? E HOH . ? A HOH 298 ? 1_555 87.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-29 4 'Structure model' 1 3 2020-07-29 5 'Structure model' 1 4 2021-10-13 6 'Structure model' 1 5 2023-09-06 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Structure summary' 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen 10 5 'Structure model' chem_comp 11 5 'Structure model' database_2 12 5 'Structure model' struct_ref_seq_dif 13 6 'Structure model' chem_comp_atom 14 6 'Structure model' chem_comp_bond 15 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 5 'Structure model' '_chem_comp.pdbx_synonyms' 37 5 'Structure model' '_database_2.pdbx_DOI' 38 5 'Structure model' '_database_2.pdbx_database_accession' 39 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_phasing_MR.entry_id 3LEI _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 48.900 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 48.900 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 d*TREK 9.4SSI 'Jan 10 2006' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data scaling' http://www.rigaku.com/software/dtrek.html ? ? 2 PHASER 1.3.2 'Fri May 5 14:40:40 2006' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CrystalClear . ? ? ? ? 'data collection' ? ? ? 6 d*TREK . ? ? ? ? 'data reduction' ? ? ? # _pdbx_entry_details.entry_id 3LEI _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE FOR THE LECTIN DOMAIN OF LECTINOLYSIN WAS DERIVED FROM THE PUBLISHED PROTEIN SEQUENCE PUBLISHED BY FARRAND ET AL. (BIOCHEMISTRY, VOL. 47, 2008). ACCORDING TO THEIR SEQUENCING RESULTS AMINO ACIDS 67 AND 158 ARE THREONINE AND ASPARTATE, RESPECTIVELY. THE CORRECTNESS OF THR 67 AND ASP 158 WAS CONFIRMED IN THE ELECTRON DENSITY MAP. ; _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 62 ? ? 46.68 28.95 2 1 ASN A 116 ? ? 27.63 59.93 3 1 GLU A 177 ? ? -171.57 145.48 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id FUC _pdbx_validate_chiral.auth_seq_id 1186 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 37 ? A GLU 1 2 1 Y 1 A GLN 38 ? A GLN 2 3 1 Y 1 A GLY 39 ? A GLY 3 4 1 Y 1 A ASN 40 ? A ASN 4 5 1 Y 1 A ARG 41 ? A ARG 5 6 1 Y 1 A THR 186 ? A THR 149 7 1 Y 1 A GLN 187 ? A GLN 150 8 1 Y 1 A VAL 188 ? A VAL 151 9 1 Y 1 A GLY 189 ? A GLY 152 10 1 Y 1 A CYS 190 ? A CYS 153 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 FUC C1 C N R 89 FUC C2 C N S 90 FUC C3 C N R 91 FUC C4 C N S 92 FUC C5 C N S 93 FUC C6 C N N 94 FUC O1 O N N 95 FUC O2 O N N 96 FUC O3 O N N 97 FUC O4 O N N 98 FUC O5 O N N 99 FUC H1 H N N 100 FUC H2 H N N 101 FUC H3 H N N 102 FUC H4 H N N 103 FUC H5 H N N 104 FUC H61 H N N 105 FUC H62 H N N 106 FUC H63 H N N 107 FUC HO1 H N N 108 FUC HO2 H N N 109 FUC HO3 H N N 110 FUC HO4 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 NI NI NI N N 254 PHE N N N N 255 PHE CA C N S 256 PHE C C N N 257 PHE O O N N 258 PHE CB C N N 259 PHE CG C Y N 260 PHE CD1 C Y N 261 PHE CD2 C Y N 262 PHE CE1 C Y N 263 PHE CE2 C Y N 264 PHE CZ C Y N 265 PHE OXT O N N 266 PHE H H N N 267 PHE H2 H N N 268 PHE HA H N N 269 PHE HB2 H N N 270 PHE HB3 H N N 271 PHE HD1 H N N 272 PHE HD2 H N N 273 PHE HE1 H N N 274 PHE HE2 H N N 275 PHE HZ H N N 276 PHE HXT H N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SER N N N N 295 SER CA C N S 296 SER C C N N 297 SER O O N N 298 SER CB C N N 299 SER OG O N N 300 SER OXT O N N 301 SER H H N N 302 SER H2 H N N 303 SER HA H N N 304 SER HB2 H N N 305 SER HB3 H N N 306 SER HG H N N 307 SER HXT H N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 VAL N N N N 377 VAL CA C N S 378 VAL C C N N 379 VAL O O N N 380 VAL CB C N N 381 VAL CG1 C N N 382 VAL CG2 C N N 383 VAL OXT O N N 384 VAL H H N N 385 VAL H2 H N N 386 VAL HA H N N 387 VAL HB H N N 388 VAL HG11 H N N 389 VAL HG12 H N N 390 VAL HG13 H N N 391 VAL HG21 H N N 392 VAL HG22 H N N 393 VAL HG23 H N N 394 VAL HXT H N N 395 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 FUC C1 C2 sing N N 83 FUC C1 O1 sing N N 84 FUC C1 O5 sing N N 85 FUC C1 H1 sing N N 86 FUC C2 C3 sing N N 87 FUC C2 O2 sing N N 88 FUC C2 H2 sing N N 89 FUC C3 C4 sing N N 90 FUC C3 O3 sing N N 91 FUC C3 H3 sing N N 92 FUC C4 C5 sing N N 93 FUC C4 O4 sing N N 94 FUC C4 H4 sing N N 95 FUC C5 C6 sing N N 96 FUC C5 O5 sing N N 97 FUC C5 H5 sing N N 98 FUC C6 H61 sing N N 99 FUC C6 H62 sing N N 100 FUC C6 H63 sing N N 101 FUC O1 HO1 sing N N 102 FUC O2 HO2 sing N N 103 FUC O3 HO3 sing N N 104 FUC O4 HO4 sing N N 105 GLN N CA sing N N 106 GLN N H sing N N 107 GLN N H2 sing N N 108 GLN CA C sing N N 109 GLN CA CB sing N N 110 GLN CA HA sing N N 111 GLN C O doub N N 112 GLN C OXT sing N N 113 GLN CB CG sing N N 114 GLN CB HB2 sing N N 115 GLN CB HB3 sing N N 116 GLN CG CD sing N N 117 GLN CG HG2 sing N N 118 GLN CG HG3 sing N N 119 GLN CD OE1 doub N N 120 GLN CD NE2 sing N N 121 GLN NE2 HE21 sing N N 122 GLN NE2 HE22 sing N N 123 GLN OXT HXT sing N N 124 GLU N CA sing N N 125 GLU N H sing N N 126 GLU N H2 sing N N 127 GLU CA C sing N N 128 GLU CA CB sing N N 129 GLU CA HA sing N N 130 GLU C O doub N N 131 GLU C OXT sing N N 132 GLU CB CG sing N N 133 GLU CB HB2 sing N N 134 GLU CB HB3 sing N N 135 GLU CG CD sing N N 136 GLU CG HG2 sing N N 137 GLU CG HG3 sing N N 138 GLU CD OE1 doub N N 139 GLU CD OE2 sing N N 140 GLU OE2 HE2 sing N N 141 GLU OXT HXT sing N N 142 GLY N CA sing N N 143 GLY N H sing N N 144 GLY N H2 sing N N 145 GLY CA C sing N N 146 GLY CA HA2 sing N N 147 GLY CA HA3 sing N N 148 GLY C O doub N N 149 GLY C OXT sing N N 150 GLY OXT HXT sing N N 151 HIS N CA sing N N 152 HIS N H sing N N 153 HIS N H2 sing N N 154 HIS CA C sing N N 155 HIS CA CB sing N N 156 HIS CA HA sing N N 157 HIS C O doub N N 158 HIS C OXT sing N N 159 HIS CB CG sing N N 160 HIS CB HB2 sing N N 161 HIS CB HB3 sing N N 162 HIS CG ND1 sing Y N 163 HIS CG CD2 doub Y N 164 HIS ND1 CE1 doub Y N 165 HIS ND1 HD1 sing N N 166 HIS CD2 NE2 sing Y N 167 HIS CD2 HD2 sing N N 168 HIS CE1 NE2 sing Y N 169 HIS CE1 HE1 sing N N 170 HIS NE2 HE2 sing N N 171 HIS OXT HXT sing N N 172 HOH O H1 sing N N 173 HOH O H2 sing N N 174 ILE N CA sing N N 175 ILE N H sing N N 176 ILE N H2 sing N N 177 ILE CA C sing N N 178 ILE CA CB sing N N 179 ILE CA HA sing N N 180 ILE C O doub N N 181 ILE C OXT sing N N 182 ILE CB CG1 sing N N 183 ILE CB CG2 sing N N 184 ILE CB HB sing N N 185 ILE CG1 CD1 sing N N 186 ILE CG1 HG12 sing N N 187 ILE CG1 HG13 sing N N 188 ILE CG2 HG21 sing N N 189 ILE CG2 HG22 sing N N 190 ILE CG2 HG23 sing N N 191 ILE CD1 HD11 sing N N 192 ILE CD1 HD12 sing N N 193 ILE CD1 HD13 sing N N 194 ILE OXT HXT sing N N 195 LEU N CA sing N N 196 LEU N H sing N N 197 LEU N H2 sing N N 198 LEU CA C sing N N 199 LEU CA CB sing N N 200 LEU CA HA sing N N 201 LEU C O doub N N 202 LEU C OXT sing N N 203 LEU CB CG sing N N 204 LEU CB HB2 sing N N 205 LEU CB HB3 sing N N 206 LEU CG CD1 sing N N 207 LEU CG CD2 sing N N 208 LEU CG HG sing N N 209 LEU CD1 HD11 sing N N 210 LEU CD1 HD12 sing N N 211 LEU CD1 HD13 sing N N 212 LEU CD2 HD21 sing N N 213 LEU CD2 HD22 sing N N 214 LEU CD2 HD23 sing N N 215 LEU OXT HXT sing N N 216 LYS N CA sing N N 217 LYS N H sing N N 218 LYS N H2 sing N N 219 LYS CA C sing N N 220 LYS CA CB sing N N 221 LYS CA HA sing N N 222 LYS C O doub N N 223 LYS C OXT sing N N 224 LYS CB CG sing N N 225 LYS CB HB2 sing N N 226 LYS CB HB3 sing N N 227 LYS CG CD sing N N 228 LYS CG HG2 sing N N 229 LYS CG HG3 sing N N 230 LYS CD CE sing N N 231 LYS CD HD2 sing N N 232 LYS CD HD3 sing N N 233 LYS CE NZ sing N N 234 LYS CE HE2 sing N N 235 LYS CE HE3 sing N N 236 LYS NZ HZ1 sing N N 237 LYS NZ HZ2 sing N N 238 LYS NZ HZ3 sing N N 239 LYS OXT HXT sing N N 240 PHE N CA sing N N 241 PHE N H sing N N 242 PHE N H2 sing N N 243 PHE CA C sing N N 244 PHE CA CB sing N N 245 PHE CA HA sing N N 246 PHE C O doub N N 247 PHE C OXT sing N N 248 PHE CB CG sing N N 249 PHE CB HB2 sing N N 250 PHE CB HB3 sing N N 251 PHE CG CD1 doub Y N 252 PHE CG CD2 sing Y N 253 PHE CD1 CE1 sing Y N 254 PHE CD1 HD1 sing N N 255 PHE CD2 CE2 doub Y N 256 PHE CD2 HD2 sing N N 257 PHE CE1 CZ doub Y N 258 PHE CE1 HE1 sing N N 259 PHE CE2 CZ sing Y N 260 PHE CE2 HE2 sing N N 261 PHE CZ HZ sing N N 262 PHE OXT HXT sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 VAL N CA sing N N 362 VAL N H sing N N 363 VAL N H2 sing N N 364 VAL CA C sing N N 365 VAL CA CB sing N N 366 VAL CA HA sing N N 367 VAL C O doub N N 368 VAL C OXT sing N N 369 VAL CB CG1 sing N N 370 VAL CB CG2 sing N N 371 VAL CB HB sing N N 372 VAL CG1 HG11 sing N N 373 VAL CG1 HG12 sing N N 374 VAL CG1 HG13 sing N N 375 VAL CG2 HG21 sing N N 376 VAL CG2 HG22 sing N N 377 VAL CG2 HG23 sing N N 378 VAL OXT HXT sing N N 379 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 alpha-L-fucopyranose FUC 3 'CALCIUM ION' CA 4 'NICKEL (II) ION' NI 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3LEO _pdbx_initial_refinement_model.details ? #