HEADER STRUCTURE GENOMICS, UNKNOWN FUNCTION 15-JAN-10 3LEQ TITLE THE CRYSTAL STRUCTURE OF THE ROADBLOCK/LC7 DOMAIN FROM STREPTOMYCES TITLE 2 AVERMITILLIS TO 1.85A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN CVNB5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ROADBLOCK/LC7 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES AVERMITILIS; SOURCE 3 ORGANISM_TAXID: 227882; SOURCE 4 STRAIN: MA-4680; SOURCE 5 GENE: CVNB5, SAV2189, SAV_2189; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS PSI, MCSG, STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, STRUCTURE GENOMICS, UNKNOWN KEYWDS 3 FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.STEIN,X.XU,H.CUI,J.NG,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 30-OCT-24 3LEQ 1 LINK REVDAT 4 01-NOV-17 3LEQ 1 REMARK REVDAT 3 22-FEB-12 3LEQ 1 HEADER REVDAT 2 13-JUL-11 3LEQ 1 VERSN REVDAT 1 02-FEB-10 3LEQ 0 JRNL AUTH A.J.STEIN,X.XU,H.CUI,J.NG,A.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE ROADBLOCK/LC7 DOMAIN FROM JRNL TITL 2 STREPTOMYCES AVERMITILLIS TO 1.85A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 8446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 574 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 722 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.156 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.664 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 744 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1015 ; 1.238 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 106 ; 5.703 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ;26.571 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 123 ;18.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;18.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 135 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 525 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 508 ; 0.526 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 803 ; 0.901 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 236 ; 1.884 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 209 ; 2.646 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9031 21.6866 -5.6108 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.2976 REMARK 3 T33: 0.1886 T12: 0.0339 REMARK 3 T13: -0.0152 T23: -0.0385 REMARK 3 L TENSOR REMARK 3 L11: 23.4351 L22: 19.3842 REMARK 3 L33: 30.5076 L12: 1.9727 REMARK 3 L13: -1.4875 L23: -12.4230 REMARK 3 S TENSOR REMARK 3 S11: 0.6009 S12: 1.1023 S13: 0.5116 REMARK 3 S21: -0.4387 S22: -0.2142 S23: 0.3842 REMARK 3 S31: -0.1854 S32: -1.1861 S33: -0.3867 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4771 17.6544 0.8864 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: 0.1400 REMARK 3 T33: 0.2016 T12: -0.0269 REMARK 3 T13: -0.0526 T23: -0.0451 REMARK 3 L TENSOR REMARK 3 L11: 10.8820 L22: 14.9256 REMARK 3 L33: 7.7622 L12: 4.8145 REMARK 3 L13: 3.0628 L23: -4.7345 REMARK 3 S TENSOR REMARK 3 S11: -0.2188 S12: 0.0220 S13: -0.2572 REMARK 3 S21: -0.4798 S22: 0.1343 S23: -0.3201 REMARK 3 S31: 0.4681 S32: -0.5882 S33: 0.0845 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2301 15.6897 7.6268 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.3344 REMARK 3 T33: 0.2377 T12: -0.1161 REMARK 3 T13: -0.0340 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 9.2301 L22: 12.0695 REMARK 3 L33: 7.6471 L12: 0.2525 REMARK 3 L13: -4.5263 L23: -1.4926 REMARK 3 S TENSOR REMARK 3 S11: 0.2578 S12: -0.0122 S13: -0.2511 REMARK 3 S21: 0.0484 S22: -0.4276 S23: 0.8868 REMARK 3 S31: 0.5443 S32: -0.8455 S33: 0.1698 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6038 27.5180 4.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.1984 T22: 0.0872 REMARK 3 T33: 0.1527 T12: 0.0127 REMARK 3 T13: 0.0125 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 15.8973 L22: 13.2981 REMARK 3 L33: 11.0691 L12: 2.9391 REMARK 3 L13: -2.7978 L23: 0.3594 REMARK 3 S TENSOR REMARK 3 S11: 0.1193 S12: 0.1039 S13: 0.7056 REMARK 3 S21: -0.3696 S22: -0.0075 S23: -0.6633 REMARK 3 S31: -0.6704 S32: 0.2796 S33: -0.1117 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3967 28.5436 1.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.1236 REMARK 3 T33: 0.1484 T12: 0.0444 REMARK 3 T13: -0.0311 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 28.9483 L22: 14.4734 REMARK 3 L33: 7.6029 L12: 13.7521 REMARK 3 L13: 2.4244 L23: 1.0290 REMARK 3 S TENSOR REMARK 3 S11: -0.3350 S12: 1.1251 S13: 0.8251 REMARK 3 S21: -1.0515 S22: 0.3918 S23: 0.1780 REMARK 3 S31: -0.5212 S32: -0.2396 S33: -0.0568 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3335 29.9475 4.4777 REMARK 3 T TENSOR REMARK 3 T11: 0.5975 T22: 0.6701 REMARK 3 T33: 0.7770 T12: 0.4037 REMARK 3 T13: -0.5663 T23: -0.1750 REMARK 3 L TENSOR REMARK 3 L11: 2.6357 L22: 20.8685 REMARK 3 L33: 10.3871 L12: -4.1656 REMARK 3 L13: -2.5100 L23: 0.6840 REMARK 3 S TENSOR REMARK 3 S11: -0.4008 S12: 0.7079 S13: 0.2844 REMARK 3 S21: -0.3504 S22: -0.2383 S23: 1.0839 REMARK 3 S31: -2.2983 S32: -3.1866 S33: 0.6391 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6033 32.1137 11.4692 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.0516 REMARK 3 T33: 0.1786 T12: 0.0208 REMARK 3 T13: 0.0045 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 21.9773 L22: 9.3884 REMARK 3 L33: 20.3295 L12: 1.6987 REMARK 3 L13: 15.0221 L23: -1.7333 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.0526 S13: 0.6436 REMARK 3 S21: 0.1823 S22: 0.1870 S23: 0.4425 REMARK 3 S31: -1.2352 S32: 0.2291 S33: -0.1245 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 43.6664 28.4646 15.2790 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.6410 REMARK 3 T33: 0.6769 T12: -0.2022 REMARK 3 T13: 0.0785 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 3.7226 L22: 14.7932 REMARK 3 L33: -4.4164 L12: -12.1933 REMARK 3 L13: -2.9836 L23: 2.2353 REMARK 3 S TENSOR REMARK 3 S11: 0.3914 S12: 0.5533 S13: 0.1372 REMARK 3 S21: -0.6755 S22: -0.8572 S23: -0.8060 REMARK 3 S31: -0.0952 S32: 0.2741 S33: 0.4659 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9939 20.5714 19.1076 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.3758 REMARK 3 T33: 0.0834 T12: -0.0610 REMARK 3 T13: -0.0323 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 86.0892 L22: 8.0237 REMARK 3 L33: 49.5746 L12: 8.3119 REMARK 3 L13: -46.5620 L23: -5.2248 REMARK 3 S TENSOR REMARK 3 S11: -0.1629 S12: -1.5799 S13: 0.3807 REMARK 3 S21: 0.1314 S22: -0.3910 S23: 0.4746 REMARK 3 S31: 0.5898 S32: 0.0418 S33: 0.5539 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 30.8203 20.4085 17.9418 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.2392 REMARK 3 T33: 0.1571 T12: -0.0615 REMARK 3 T13: 0.0583 T23: -0.0565 REMARK 3 L TENSOR REMARK 3 L11: 32.3491 L22: 13.1238 REMARK 3 L33: 24.5180 L12: 7.2315 REMARK 3 L13: -14.1934 L23: -4.1657 REMARK 3 S TENSOR REMARK 3 S11: 0.3658 S12: -1.2588 S13: 0.5623 REMARK 3 S21: 0.9878 S22: -0.4170 S23: 1.0522 REMARK 3 S31: 0.5428 S32: -0.8994 S33: 0.0511 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1400 21.8470 5.7247 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.2104 REMARK 3 T33: 0.2433 T12: -0.0520 REMARK 3 T13: 0.0865 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 8.9213 L22: 1.9515 REMARK 3 L33: 18.4146 L12: 2.2523 REMARK 3 L13: -13.2286 L23: -5.3044 REMARK 3 S TENSOR REMARK 3 S11: -0.1109 S12: -0.7537 S13: 0.2899 REMARK 3 S21: -0.4082 S22: 0.0352 S23: -0.2457 REMARK 3 S31: 0.3883 S32: 0.9090 S33: 0.0757 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 33.0836 21.2877 10.3790 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0805 REMARK 3 T33: 0.0976 T12: 0.0113 REMARK 3 T13: -0.0090 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 19.5980 L22: 6.1563 REMARK 3 L33: 16.4645 L12: 2.1806 REMARK 3 L13: -12.1117 L23: -0.4541 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.5255 S13: -0.0452 REMARK 3 S21: -0.0823 S22: -0.1289 S23: 0.2077 REMARK 3 S31: 0.0382 S32: 0.0628 S33: 0.1939 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 111 REMARK 3 ORIGIN FOR THE GROUP (A): 29.7887 11.6376 16.8274 REMARK 3 T TENSOR REMARK 3 T11: 0.3428 T22: 0.5040 REMARK 3 T33: 0.2366 T12: -0.0471 REMARK 3 T13: 0.0904 T23: 0.1188 REMARK 3 L TENSOR REMARK 3 L11: 14.6222 L22: 28.1098 REMARK 3 L33: 33.7681 L12: -18.3279 REMARK 3 L13: -22.4490 L23: 18.0638 REMARK 3 S TENSOR REMARK 3 S11: -1.1548 S12: -0.8267 S13: -0.6849 REMARK 3 S21: 1.5878 S22: 0.8765 S23: 1.1752 REMARK 3 S31: 1.1936 S32: 0.1771 S33: 0.2783 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 112 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 35.2142 11.1669 8.7041 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1018 REMARK 3 T33: 0.1619 T12: -0.0106 REMARK 3 T13: 0.0249 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.5483 L22: 14.1178 REMARK 3 L33: 17.1182 L12: -5.0071 REMARK 3 L13: -4.3555 L23: 1.0572 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.1639 S13: 0.2365 REMARK 3 S21: 0.1824 S22: 0.1558 S23: -0.1469 REMARK 3 S31: 0.0869 S32: -0.0232 S33: -0.0983 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 38.2828 13.3100 1.1439 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1202 REMARK 3 T33: 0.2238 T12: -0.0002 REMARK 3 T13: 0.1027 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 19.8002 L22: 24.9808 REMARK 3 L33: 33.5270 L12: 9.5151 REMARK 3 L13: -5.8822 L23: -1.3152 REMARK 3 S TENSOR REMARK 3 S11: -0.2627 S12: 0.1413 S13: -0.0813 REMARK 3 S21: -1.8095 S22: 0.0644 S23: -1.2253 REMARK 3 S31: 0.0592 S32: 0.5464 S33: 0.1983 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THIS WAS A IN SITU PROTEOLYSIS CRYSTAL STRUCTURE SO REMARK 3 THERE IS HIGHER THAN USUAL DEGREE OF DISORDER. REMARK 4 REMARK 4 3LEQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000, SHELX, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM PHOSPHATE, 0.1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.73300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.91200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.73300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.91200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.99420 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.38359 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 8 REMARK 465 SER A 64 REMARK 465 LYS A 65 REMARK 465 GLY A 66 REMARK 465 VAL A 67 REMARK 465 SER A 68 REMARK 465 MSE A 69 REMARK 465 ASP A 70 REMARK 465 PHE A 71 REMARK 465 ARG A 72 REMARK 465 ARG A 73 REMARK 465 GLY A 74 REMARK 465 PRO A 75 REMARK 465 VAL A 76 REMARK 465 GLY A 124 REMARK 465 GLU A 125 REMARK 465 HIS A 126 REMARK 465 LEU A 127 REMARK 465 SER A 128 REMARK 465 ALA A 129 REMARK 465 PRO A 130 REMARK 465 PRO A 131 REMARK 465 ARG A 132 REMARK 465 GLY A 133 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 11 CG CD OE1 NE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ASP A 35 CG OD1 OD2 REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 105 CG CD OE1 NE2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC65473.1 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS WAS A IN SITU PROTEOLYSIS CRYSTAL STRUCTURE DBREF 3LEQ A 8 133 UNP Q82L23 Q82L23_STRAW 8 133 SEQRES 1 A 126 THR HIS SER GLN LEU ASP GLN LEU LEU THR GLY LEU VAL SEQRES 2 A 126 ASP ARG VAL ALA GLU VAL ASP HIS ALA VAL VAL LEU SER SEQRES 3 A 126 GLU ASP GLY LEU VAL VAL SER LYS SER THR GLY PHE LEU SEQRES 4 A 126 ARG ASP ASP ALA GLU ARG LEU ALA ALA THR ALA SER GLY SEQRES 5 A 126 LEU MSE SER LEU SER LYS GLY VAL SER MSE ASP PHE ARG SEQRES 6 A 126 ARG GLY PRO VAL ARG GLN ALA LEU ILE GLU MSE GLY LYS SEQRES 7 A 126 GLY TYR LEU ILE LEU THR ALA ALA GLY PRO GLY ALA HIS SEQRES 8 A 126 LEU VAL VAL LEU THR ARG GLN GLY ALA ASP VAL GLY VAL SEQRES 9 A 126 VAL ALA TYR GLN MSE ASN MSE LEU VAL LYS LYS ILE GLY SEQRES 10 A 126 GLU HIS LEU SER ALA PRO PRO ARG GLY MODRES 3LEQ MSE A 61 MET SELENOMETHIONINE MODRES 3LEQ MSE A 83 MET SELENOMETHIONINE MODRES 3LEQ MSE A 116 MET SELENOMETHIONINE MODRES 3LEQ MSE A 118 MET SELENOMETHIONINE HET MSE A 61 8 HET MSE A 83 8 HET MSE A 116 8 HET MSE A 118 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *37(H2 O) HELIX 1 1 SER A 10 VAL A 23 1 14 HELIX 2 2 LEU A 46 LEU A 63 1 18 HELIX 3 3 ASP A 108 ILE A 123 1 16 SHEET 1 A 5 VAL A 38 LYS A 41 0 SHEET 2 A 5 VAL A 26 SER A 33 -1 N VAL A 31 O VAL A 39 SHEET 3 A 5 ALA A 97 THR A 103 -1 O VAL A 100 N VAL A 30 SHEET 4 A 5 TYR A 87 ALA A 92 -1 N ILE A 89 O VAL A 101 SHEET 5 A 5 GLN A 78 GLU A 82 -1 N ALA A 79 O LEU A 90 LINK C LEU A 60 N MSE A 61 1555 1555 1.32 LINK C MSE A 61 N SER A 62 1555 1555 1.33 LINK C GLU A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N GLY A 84 1555 1555 1.34 LINK C GLN A 115 N MSE A 116 1555 1555 1.34 LINK C MSE A 116 N ASN A 117 1555 1555 1.33 LINK C ASN A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N LEU A 119 1555 1555 1.33 CRYST1 89.466 29.824 40.752 90.00 104.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011177 0.000000 0.002972 0.00000 SCALE2 0.000000 0.033530 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025391 0.00000