HEADER SUGAR BINDING PROTEIN 15-JAN-10 3LEW TITLE CRYSTAL STRUCTURE OF SUSD-LIKE CARBOHYDRATE BINDING PROTEIN TITLE 2 (YP_001298396.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.70 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD-LIKE CARBOHYDRATE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 23-516; COMPND 5 SYNONYM: PUTATIVE OUTER MEMBRANE PROTEIN, PROBABLY INVOLVED IN COMPND 6 NUTRIENT BINDING; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_1083; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS SUSD-LIKE CARBOHYDRATE BINDING PROTEIN, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-2, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LEW 1 REMARK SEQADV REVDAT 4 17-JUL-19 3LEW 1 REMARK LINK REVDAT 3 01-NOV-17 3LEW 1 REMARK REVDAT 2 13-JUL-11 3LEW 1 VERSN REVDAT 1 09-FEB-10 3LEW 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF SUSD-LIKE CARBOHYDRATE BINDING PROTEIN JRNL TITL 2 (YP_001298396.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.70 JRNL TITL 3 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 68804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3490 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4711 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 261 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3813 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 113 REMARK 3 SOLVENT ATOMS : 527 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 27.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.97000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.611 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4126 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2816 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5583 ; 1.486 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6859 ; 0.962 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 6.047 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;37.619 ;24.593 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;12.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.824 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4600 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 856 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2429 ; 0.827 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 988 ; 0.247 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3916 ; 1.463 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1697 ; 2.288 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1645 ; 3.624 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 456 REMARK 3 RESIDUE RANGE : A 460 A 516 REMARK 3 ORIGIN FOR THE GROUP (A): 58.5080 2.3490 22.9120 REMARK 3 T TENSOR REMARK 3 T11: 0.0327 T22: 0.0270 REMARK 3 T33: 0.0118 T12: -0.0011 REMARK 3 T13: 0.0089 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.5930 L22: 0.7673 REMARK 3 L33: 0.7115 L12: 0.0379 REMARK 3 L13: -0.0576 L23: 0.1290 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0569 S13: 0.0197 REMARK 3 S21: -0.0082 S22: -0.0181 S23: -0.0647 REMARK 3 S31: 0.0315 S32: -0.0160 S33: -0.0013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. PEG-400 REMARK 3 FRAGMENTS (1PE AND 2PE) FROM THE CRYOPROTECTION SOLUTION ARE REMARK 3 MODELED. REMARK 4 REMARK 4 3LEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97954 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.368 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0000% POLYETHYLENE GLYCOL 3000, REMARK 280 32.0000% POLYETHYLENE GLYCOL 400, 0.1M MES PH 6.5, NANODROP', REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.88600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.35350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.88600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.35350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 OH6 1PE A 10 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 THR A 25 REMARK 465 ILE A 26 REMARK 465 PRO A 27 REMARK 465 THR A 28 REMARK 465 THR A 29 REMARK 465 TYR A 30 REMARK 465 VAL A 31 REMARK 465 ASP A 32 REMARK 465 ALA A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 VAL A 36 REMARK 465 ASP A 178 REMARK 465 GLU A 457 REMARK 465 ASN A 458 REMARK 465 GLY A 459 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CD CE NZ REMARK 470 ARG A 113 CZ NH1 NH2 REMARK 470 GLN A 175 CG CD OE1 NE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 ILE A 181 CG1 CG2 CD1 REMARK 470 GLU A 338 CG CD OE1 OE2 REMARK 470 LYS A 400 CD CE NZ REMARK 470 ASP A 456 CG OD1 OD2 REMARK 470 LYS A 516 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 472 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 472 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 163.33 69.46 REMARK 500 ASN A 83 -169.33 -77.28 REMARK 500 CYS A 169 -79.31 -130.08 REMARK 500 TYR A 305 51.14 38.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 1 REMARK 610 1PE A 2 REMARK 610 1PE A 3 REMARK 610 2PE A 4 REMARK 610 1PE A 5 REMARK 610 1PE A 6 REMARK 610 1PE A 7 REMARK 610 1PE A 8 REMARK 610 1PE A 9 REMARK 610 1PE A 10 REMARK 610 1PE A 11 REMARK 610 1PE A 12 REMARK 610 1PE A 13 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2PE A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 13 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396537 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 23-516) WAS EXPRESSED WITH A PURIFICATION REMARK 999 TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LEW A 23 516 UNP A6KZB0 A6KZB0_BACV8 23 516 SEQADV 3LEW GLY A 0 UNP A6KZB0 EXPRESSION TAG SEQRES 1 A 495 GLY LEU ASP THR ILE PRO THR THR TYR VAL ASP ALA GLY SEQRES 2 A 495 SER VAL PHE GLY LYS THR GLY ASP ALA GLU LYS VAL LEU SEQRES 3 A 495 ASN GLY GLY TRP ASN TYR LEU MSE GLU THR PHE ASN SER SEQRES 4 A 495 TYR ALA ASN PRO GLY TYR GLY ALA MSE LEU ARG ALA ASN SEQRES 5 A 495 ASP ALA MSE GLY SER ASP VAL VAL LEU ASN SER LYS TYR SEQRES 6 A 495 GLY PHE ARG THR HIS ASN GLU PHE SER ALA ILE TYR GLY SEQRES 7 A 495 LYS GLY GLY THR ASN THR LEU SER TRP LEU LEU ALA TYR SEQRES 8 A 495 ARG VAL ILE ASN ASP CYS ASN GLY VAL LEU ASP ASN ILE SEQRES 9 A 495 ASP ALA ALA GLU GLY THR GLN ALA ASP ARG ASN ARG ILE SEQRES 10 A 495 LYS GLY GLN ALA LEU ALA LEU ARG GLY PHE LEU TYR LEU SEQRES 11 A 495 HIS LEU ALA SER CYS TYR SER PHE ALA ILE ASP LYS ASP SEQRES 12 A 495 PRO ASP ALA VAL CYS ALA PRO ILE TYR THR GLN SER THR SEQRES 13 A 495 ASP GLU THR ILE ALA ALA GLU GLY LYS PRO ALA SER SER SEQRES 14 A 495 VAL SER GLU VAL TYR ALA GLN SER ILE ASN ASP LEU GLU SEQRES 15 A 495 GLU ALA LEU GLU LEU ILE PRO GLU THR TYR VAL ARG ASP SEQRES 16 A 495 ALA LYS HIS LYS ILE ASP ASN GLU VAL VAL LEU GLY ILE SEQRES 17 A 495 LEU SER ARG ALA CYS LEU TYR ALA ARG GLN TRP GLU LYS SEQRES 18 A 495 ALA LYS THR TYR SER ASP LYS LEU LEU ALA LYS ASP ASN SEQRES 19 A 495 TYR LEU MSE THR GLU SER GLU TYR LYS ALA GLY PHE ASN SEQRES 20 A 495 SER VAL ASP ASN LYS GLU TRP ILE TRP GLY HIS ALA GLN SEQRES 21 A 495 THR ASN ASP GLN SER ASN ALA SER TYR GLN PHE HIS TYR SEQRES 22 A 495 LEU ASP THR THR THR LYS GLY SER TYR TYR TYR SER PHE SEQRES 23 A 495 ASN VAL ASP PRO TYR PHE ARG ASP LEU PHE GLU ASP GLY SEQRES 24 A 495 ASP TYR ARG LYS GLU MSE LEU PHE TRP ALA THR ASP PRO SEQRES 25 A 495 GLY ALA ASP VAL GLU SER ALA ALA TYR VAL TRP MSE ARG SEQRES 26 A 495 ASN SER LYS PHE ARG PHE ARG ASP ILE GLU ASN GLN LEU SEQRES 27 A 495 GLY ASP ILE VAL LEU MSE ARG VAL ALA GLU ILE TYR LEU SEQRES 28 A 495 ILE ASN ALA GLU ALA LYS ALA HIS LEU ASN ASP PRO ASP SEQRES 29 A 495 ALA ILE ASN LYS LEU ASN ASP LEU LYS THR ALA ARG GLY SEQRES 30 A 495 ALA LYS THR ILE HIS THR ASN LEU SER GLN GLN ASP LEU SEQRES 31 A 495 LEU GLU THR ILE TRP LEU GLU ARG ARG LYS GLU LEU TRP SEQRES 32 A 495 GLY GLU GLY PHE SER LEU ILE ASP ILE ILE ARG ASN GLN SEQRES 33 A 495 GLN THR VAL VAL ARG ASN ALA TYR PRO GLU GLY PRO ILE SEQRES 34 A 495 ASP TYR ILE TYR THR ASP GLU ASN GLY GLN THR HIS THR SEQRES 35 A 495 LEU LYS LYS LYS THR GLN GLY HIS ARG PHE PHE ASN PHE SEQRES 36 A 495 PRO ASP LYS SER ALA PHE CYS PRO ASN SER LYS TYR TYR SEQRES 37 A 495 LEU TYR ARG ILE THR ASP SER GLU GLU LEU ALA ASN LYS SEQRES 38 A 495 ASN LEU TYR LYS ASP HIS PRO LYS LEU SER ILE TYR THR SEQRES 39 A 495 LYS MODRES 3LEW MSE A 55 MET SELENOMETHIONINE MODRES 3LEW MSE A 69 MET SELENOMETHIONINE MODRES 3LEW MSE A 76 MET SELENOMETHIONINE MODRES 3LEW MSE A 258 MET SELENOMETHIONINE MODRES 3LEW MSE A 326 MET SELENOMETHIONINE MODRES 3LEW MSE A 345 MET SELENOMETHIONINE MODRES 3LEW MSE A 365 MET SELENOMETHIONINE HET MSE A 55 8 HET MSE A 69 8 HET MSE A 76 8 HET MSE A 258 8 HET MSE A 326 8 HET MSE A 345 13 HET MSE A 365 8 HET 1PE A 1 13 HET 1PE A 2 10 HET 1PE A 3 9 HET 2PE A 4 17 HET 1PE A 5 10 HET 1PE A 6 6 HET 1PE A 7 9 HET 1PE A 8 7 HET 1PE A 9 7 HET 1PE A 10 7 HET 1PE A 11 5 HET 1PE A 12 8 HET 1PE A 13 5 HETNAM MSE SELENOMETHIONINE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM 2PE NONAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 1PE 12(C10 H22 O6) FORMUL 5 2PE C18 H38 O10 FORMUL 15 HOH *527(H2 O) HELIX 1 1 LYS A 39 THR A 57 1 19 HELIX 2 2 TYR A 66 MSE A 76 1 11 HELIX 3 3 PHE A 88 GLU A 93 1 6 HELIX 4 4 GLY A 101 ILE A 125 1 25 HELIX 5 5 ASP A 126 ALA A 128 5 3 HELIX 6 6 THR A 131 TYR A 157 1 27 HELIX 7 7 GLU A 179 GLU A 184 1 6 HELIX 8 8 VAL A 191 ILE A 209 1 19 HELIX 9 9 ASP A 222 ALA A 237 1 16 HELIX 10 10 GLN A 239 ASP A 254 1 16 HELIX 11 11 THR A 259 LYS A 264 1 6 HELIX 12 12 ASN A 287 TYR A 290 5 4 HELIX 13 13 GLN A 291 ASP A 296 1 6 HELIX 14 14 PRO A 311 PHE A 317 5 7 HELIX 15 15 ARG A 323 GLU A 325 5 3 HELIX 16 16 VAL A 367 LEU A 381 1 15 HELIX 17 17 ASP A 385 GLY A 398 1 14 HELIX 18 18 SER A 407 LEU A 423 1 17 HELIX 19 19 PHE A 428 ASN A 436 1 9 HELIX 20 20 SER A 486 LEU A 490 5 5 HELIX 21 21 THR A 494 ASN A 501 1 8 SHEET 1 A 2 VAL A 80 LEU A 82 0 SHEET 2 A 2 PHE A 307 VAL A 309 -1 O ASN A 308 N VAL A 81 SHEET 1 B 2 VAL A 168 ALA A 170 0 SHEET 2 B 2 SER A 189 SER A 190 -1 O SER A 189 N ALA A 170 SHEET 1 C 2 TRP A 275 HIS A 279 0 SHEET 2 C 2 ILE A 362 ARG A 366 -1 O ILE A 362 N HIS A 279 SHEET 1 D 4 LEU A 327 ALA A 330 0 SHEET 2 D 4 TYR A 342 ASN A 347 -1 O ARG A 346 N PHE A 328 SHEET 3 D 4 HIS A 462 GLN A 469 1 O LYS A 467 N VAL A 343 SHEET 4 D 4 ILE A 450 TYR A 454 -1 N TYR A 452 O LEU A 464 LINK C LEU A 54 N MSE A 55 1555 1555 1.33 LINK C MSE A 55 N GLU A 56 1555 1555 1.32 LINK C ALA A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N LEU A 70 1555 1555 1.33 LINK C ALA A 75 N MSE A 76 1555 1555 1.32 LINK C MSE A 76 N GLY A 77 1555 1555 1.34 LINK C LEU A 257 N MSE A 258 1555 1555 1.33 LINK C MSE A 258 N THR A 259 1555 1555 1.33 LINK C GLU A 325 N MSE A 326 1555 1555 1.34 LINK C MSE A 326 N LEU A 327 1555 1555 1.32 LINK C TRP A 344 N MSE A 345 1555 1555 1.33 LINK C MSE A 345 N ARG A 346 1555 1555 1.32 LINK C LEU A 364 N MSE A 365 1555 1555 1.32 LINK C MSE A 365 N ARG A 366 1555 1555 1.34 CISPEP 1 GLY A 448 PRO A 449 0 4.41 SITE 1 AC1 7 1PE A 2 1PE A 3 ALA A 252 LYS A 253 SITE 2 AC1 7 ASP A 254 ASN A 255 HOH A 835 SITE 1 AC2 9 1PE A 1 1PE A 3 1PE A 11 ASN A 255 SITE 2 AC2 9 TYR A 371 ASP A 392 THR A 395 HOH A 527 SITE 3 AC2 9 HOH A 596 SITE 1 AC3 7 1PE A 1 1PE A 2 LEU A 251 ASN A 255 SITE 2 AC3 7 TYR A 371 ASP A 392 HOH A 530 SITE 1 AC4 6 LYS A 218 ASP A 271 PRO A 484 ASN A 485 SITE 2 AC4 6 HOH A 881 HOH A 884 SITE 1 AC5 5 TYR A 112 TYR A 173 SER A 496 GLU A 497 SITE 2 AC5 5 HOH A1000 SITE 1 AC6 3 ASN A 443 ALA A 444 HOH A 843 SITE 1 AC7 5 LEU A 206 GLU A 207 ASN A 223 LYS A 253 SITE 2 AC7 5 HOH A 911 SITE 1 AC8 1 TYR A 312 SITE 1 AC9 3 ILE A 161 ALA A 237 ARG A 238 SITE 1 BC1 1 ASN A 388 SITE 1 BC2 2 1PE A 2 HOH A 747 SITE 1 BC3 7 PHE A 37 GLY A 38 LYS A 39 PHE A 58 SITE 2 BC3 7 ASN A 59 LEU A 109 HOH A 872 SITE 1 BC4 2 ASN A 200 GLU A 207 CRYST1 191.772 46.707 73.524 90.00 106.55 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005215 0.000000 0.001550 0.00000 SCALE2 0.000000 0.021410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014189 0.00000