HEADER SIGNALING PROTEIN/TRANSCRIPTION 15-JAN-10 3LF0 TITLE CRYSTAL STRUCTURE OF THE ATP BOUND MYCOBACTERIUM TUBERCULOSIS NITROGEN TITLE 2 REGULATORY PII PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITROGEN REGULATORY PROTEIN P-II; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: GLNB, MT2987, MTCY338.08C, RV2919C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28TEV; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28TEV KEYWDS PII PROTEIN, GLNK, GLNB, T-LOOP, 3-10 HELIX, C-LOOP, B-LOOP, KEYWDS 2 STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KEYWDS 3 NUCLEOTIDE-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 SIGNALING PROTEIN-TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.D.SHETTY,S.K.PALANINATHAN,M.C.M.REDDY,J.L.OWEN,J.C.SACCHETTINI,TB AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 06-SEP-23 3LF0 1 REMARK SEQADV REVDAT 2 11-AUG-10 3LF0 1 JRNL REVDAT 1 07-JUL-10 3LF0 0 JRNL AUTH N.D.SHETTY,M.C.REDDY,S.K.PALANINATHAN,J.L.OWEN, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL CRYSTAL STRUCTURES OF THE APO AND ATP BOUND MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS NITROGEN REGULATORY PII PROTEIN. JRNL REF PROTEIN SCI. V. 19 1513 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20521335 JRNL DOI 10.1002/PRO.430 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 744 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2361 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.416 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.214 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2487 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3392 ; 1.860 ; 2.014 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 6.331 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;35.058 ;23.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 416 ;19.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.902 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 411 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1766 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1045 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1635 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 129 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.227 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1579 ; 0.733 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2505 ; 1.215 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1031 ; 2.214 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 887 ; 3.696 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8557 -15.3195 11.0143 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: 0.1855 REMARK 3 T33: -0.0186 T12: 0.0090 REMARK 3 T13: -0.0197 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 8.9038 L22: 4.8882 REMARK 3 L33: 7.6456 L12: 1.6034 REMARK 3 L13: -2.3269 L23: 0.2671 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: -0.8634 S13: -0.0125 REMARK 3 S21: 0.2834 S22: -0.1410 S23: -0.3561 REMARK 3 S31: -0.0136 S32: 0.7639 S33: 0.1291 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9355 -18.6359 13.0092 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.2063 REMARK 3 T33: 0.0160 T12: 0.0272 REMARK 3 T13: 0.0709 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 4.4762 L22: 5.5083 REMARK 3 L33: 4.8298 L12: 1.0621 REMARK 3 L13: -1.0005 L23: 0.5991 REMARK 3 S TENSOR REMARK 3 S11: 0.0134 S12: -0.5187 S13: -0.3332 REMARK 3 S21: 0.4996 S22: -0.1745 S23: 0.1323 REMARK 3 S31: 0.2851 S32: -0.0126 S33: 0.1612 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2509 -10.6541 -9.0025 REMARK 3 T TENSOR REMARK 3 T11: 0.0289 T22: 0.1442 REMARK 3 T33: -0.0783 T12: 0.0108 REMARK 3 T13: 0.0153 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 5.8778 L22: 2.4070 REMARK 3 L33: 8.9433 L12: -1.5247 REMARK 3 L13: -3.7938 L23: -0.7868 REMARK 3 S TENSOR REMARK 3 S11: 0.2409 S12: 0.3290 S13: 0.2377 REMARK 3 S21: -0.2946 S22: -0.2616 S23: -0.1171 REMARK 3 S31: -0.5604 S32: -0.0133 S33: 0.0207 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 112 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4116 -10.5034 -5.7981 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1784 REMARK 3 T33: 0.0274 T12: 0.0347 REMARK 3 T13: -0.0021 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.2671 L22: 0.7527 REMARK 3 L33: 3.7721 L12: -0.1537 REMARK 3 L13: -2.5859 L23: -0.0210 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.3823 S13: 0.1104 REMARK 3 S21: -0.1518 S22: -0.1730 S23: 0.0500 REMARK 3 S31: -0.3149 S32: -0.5454 S33: 0.0449 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 86 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6514 -29.9802 -1.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1200 REMARK 3 T33: 0.1202 T12: -0.0753 REMARK 3 T13: 0.1719 T23: -0.1164 REMARK 3 L TENSOR REMARK 3 L11: 7.9961 L22: 6.1053 REMARK 3 L33: 6.7949 L12: -1.6163 REMARK 3 L13: 0.5744 L23: -2.8314 REMARK 3 S TENSOR REMARK 3 S11: -0.3853 S12: 0.1476 S13: -0.7672 REMARK 3 S21: -0.2571 S22: -0.1333 S23: 0.0373 REMARK 3 S31: 0.9180 S32: -0.3040 S33: 0.5186 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 87 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8210 -18.4643 -8.4251 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: 0.3670 REMARK 3 T33: -0.0077 T12: -0.0462 REMARK 3 T13: -0.0442 T23: -0.1200 REMARK 3 L TENSOR REMARK 3 L11: 4.5381 L22: 6.9021 REMARK 3 L33: 11.5913 L12: -1.4731 REMARK 3 L13: -1.5673 L23: -4.1766 REMARK 3 S TENSOR REMARK 3 S11: -0.0694 S12: 0.7715 S13: -0.0359 REMARK 3 S21: -0.7025 S22: 0.1466 S23: 0.3784 REMARK 3 S31: 0.0727 S32: -1.8305 S33: -0.0772 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LF0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97953 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14020 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 62.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: PDB ENTRY 3BZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE PH 6.0 AND 1.0 M REMARK 280 SODIUM ACETATE TRIHYDRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.34100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.87100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.87100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 110.01150 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.87100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.87100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.67050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.87100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.87100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 110.01150 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.87100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.87100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.67050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.34100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 39 REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 HIS A 42 REMARK 465 THR A 43 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 TYR A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 GLU A 50 REMARK 465 TYR A 51 REMARK 465 SER A 52 REMARK 465 VAL A 53 REMARK 465 SER B -1 REMARK 465 LYS B 40 REMARK 465 SER C -1 REMARK 465 GLN C 39 REMARK 465 LYS C 40 REMARK 465 GLY C 41 REMARK 465 HIS C 42 REMARK 465 THR C 43 REMARK 465 GLU C 44 REMARK 465 VAL C 45 REMARK 465 TYR C 46 REMARK 465 ARG C 47 REMARK 465 GLY C 48 REMARK 465 ALA C 49 REMARK 465 GLU C 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 85 CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 26 CG CD1 CD2 REMARK 470 GLN B 39 CB CG CD OE1 NE2 REMARK 470 ARG B 79 NE CZ NH1 NH2 REMARK 470 ILE C 69 CD1 REMARK 470 LYS C 72 CD CE NZ REMARK 470 LYS C 85 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 26 -82.26 -90.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP C 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BZQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO MYCOBACTERIUM TUBERCULOSIS NITROGEN REMARK 900 REGULATORY PII PROTEIN REMARK 900 RELATED ID: RV2919C RELATED DB: TARGETDB DBREF 3LF0 A 1 112 UNP P64249 GLNB_MYCTU 1 112 DBREF 3LF0 B 1 112 UNP P64249 GLNB_MYCTU 1 112 DBREF 3LF0 C 1 112 UNP P64249 GLNB_MYCTU 1 112 SEQADV 3LF0 SER A -1 UNP P64249 EXPRESSION TAG SEQADV 3LF0 HIS A 0 UNP P64249 EXPRESSION TAG SEQADV 3LF0 SER B -1 UNP P64249 EXPRESSION TAG SEQADV 3LF0 HIS B 0 UNP P64249 EXPRESSION TAG SEQADV 3LF0 SER C -1 UNP P64249 EXPRESSION TAG SEQADV 3LF0 HIS C 0 UNP P64249 EXPRESSION TAG SEQRES 1 A 114 SER HIS MET LYS LEU ILE THR ALA ILE VAL LYS PRO PHE SEQRES 2 A 114 THR LEU ASP ASP VAL LYS THR SER LEU GLU ASP ALA GLY SEQRES 3 A 114 VAL LEU GLY MET THR VAL SER GLU ILE GLN GLY TYR GLY SEQRES 4 A 114 ARG GLN LYS GLY HIS THR GLU VAL TYR ARG GLY ALA GLU SEQRES 5 A 114 TYR SER VAL ASP PHE VAL PRO LYS VAL ARG ILE GLU VAL SEQRES 6 A 114 VAL VAL ASP ASP SER ILE VAL ASP LYS VAL VAL ASP SER SEQRES 7 A 114 ILE VAL ARG ALA ALA ARG THR GLY LYS ILE GLY ASP GLY SEQRES 8 A 114 LYS VAL TRP VAL SER PRO VAL ASP THR ILE VAL ARG VAL SEQRES 9 A 114 ARG THR GLY GLU ARG GLY HIS ASP ALA LEU SEQRES 1 B 114 SER HIS MET LYS LEU ILE THR ALA ILE VAL LYS PRO PHE SEQRES 2 B 114 THR LEU ASP ASP VAL LYS THR SER LEU GLU ASP ALA GLY SEQRES 3 B 114 VAL LEU GLY MET THR VAL SER GLU ILE GLN GLY TYR GLY SEQRES 4 B 114 ARG GLN LYS GLY HIS THR GLU VAL TYR ARG GLY ALA GLU SEQRES 5 B 114 TYR SER VAL ASP PHE VAL PRO LYS VAL ARG ILE GLU VAL SEQRES 6 B 114 VAL VAL ASP ASP SER ILE VAL ASP LYS VAL VAL ASP SER SEQRES 7 B 114 ILE VAL ARG ALA ALA ARG THR GLY LYS ILE GLY ASP GLY SEQRES 8 B 114 LYS VAL TRP VAL SER PRO VAL ASP THR ILE VAL ARG VAL SEQRES 9 B 114 ARG THR GLY GLU ARG GLY HIS ASP ALA LEU SEQRES 1 C 114 SER HIS MET LYS LEU ILE THR ALA ILE VAL LYS PRO PHE SEQRES 2 C 114 THR LEU ASP ASP VAL LYS THR SER LEU GLU ASP ALA GLY SEQRES 3 C 114 VAL LEU GLY MET THR VAL SER GLU ILE GLN GLY TYR GLY SEQRES 4 C 114 ARG GLN LYS GLY HIS THR GLU VAL TYR ARG GLY ALA GLU SEQRES 5 C 114 TYR SER VAL ASP PHE VAL PRO LYS VAL ARG ILE GLU VAL SEQRES 6 C 114 VAL VAL ASP ASP SER ILE VAL ASP LYS VAL VAL ASP SER SEQRES 7 C 114 ILE VAL ARG ALA ALA ARG THR GLY LYS ILE GLY ASP GLY SEQRES 8 C 114 LYS VAL TRP VAL SER PRO VAL ASP THR ILE VAL ARG VAL SEQRES 9 C 114 ARG THR GLY GLU ARG GLY HIS ASP ALA LEU HET ATP A 701 31 HET ATP B 701 31 HET ATP C 701 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 4 ATP 3(C10 H16 N5 O13 P3) FORMUL 7 HOH *124(H2 O) HELIX 1 1 LYS A 9 PHE A 11 5 3 HELIX 2 2 THR A 12 ALA A 23 1 12 HELIX 3 3 ASP A 67 ARG A 82 1 16 HELIX 4 4 ARG A 107 LEU A 112 5 6 HELIX 5 5 THR B 12 ASP B 22 1 11 HELIX 6 6 ILE B 69 ARG B 82 1 14 HELIX 7 7 ARG B 107 LEU B 112 5 6 HELIX 8 8 LYS C 9 PHE C 11 5 3 HELIX 9 9 THR C 12 GLY C 24 1 13 HELIX 10 10 ILE C 69 ARG C 82 1 14 HELIX 11 11 ARG C 107 LEU C 112 5 6 SHEET 1 15 1 MET A 1 VAL A 8 0 SHEET 1 16 1 THR A 29 GLY A 35 0 SHEET 1 17 1 VAL A 56 ASP A 66 0 SHEET 1 18 1 LYS A 90 VAL A 96 0 SHEET 1 19 1 MET B 1 VAL B 8 0 SHEET 1 20 1 THR B 29 GLY B 35 0 SHEET 1 21 1 HIS B 42 TYR B 46 0 SHEET 1 22 1 ALA B 49 VAL B 53 0 SHEET 1 23 1 VAL B 56 ASP B 66 0 SHEET 1 24 1 GLY B 89 VAL B 96 0 SHEET 1 25 1 MET C 1 VAL C 8 0 SHEET 1 26 1 THR C 29 TYR C 36 0 SHEET 1 27 1 PHE C 55 ASP C 66 0 SHEET 1 28 1 LYS C 90 VAL C 96 0 SITE 1 AC1 21 ILE A 7 GLY A 35 TYR A 36 GLY A 37 SITE 2 AC1 21 ARG A 38 ILE A 86 GLY A 87 ASP A 88 SITE 3 AC1 21 GLY A 89 LYS A 90 HOH A 128 HOH A 148 SITE 4 AC1 21 GLY B 27 MET B 28 THR B 29 GLU B 62 SITE 5 AC1 21 VAL B 63 VAL B 64 ARG B 101 ARG B 103 SITE 6 AC1 21 HOH B 143 SITE 1 AC2 23 ILE B 7 ILE B 33 GLY B 35 TYR B 36 SITE 2 AC2 23 GLY B 37 ARG B 38 GLN B 39 LYS B 58 SITE 3 AC2 23 ILE B 86 GLY B 87 ASP B 88 GLY B 89 SITE 4 AC2 23 LYS B 90 HOH B 134 HOH B 144 GLY C 27 SITE 5 AC2 23 MET C 28 THR C 29 GLU C 62 VAL C 63 SITE 6 AC2 23 VAL C 64 ARG C 101 ARG C 103 SITE 1 AC3 19 GLY A 27 MET A 28 VAL A 63 VAL A 64 SITE 2 AC3 19 ARG A 101 ARG A 103 ILE C 7 GLY C 35 SITE 3 AC3 19 TYR C 36 GLY C 37 ARG C 38 LYS C 58 SITE 4 AC3 19 ILE C 86 GLY C 87 ASP C 88 GLY C 89 SITE 5 AC3 19 LYS C 90 HOH C 130 HOH C 139 CRYST1 69.742 69.742 146.682 90.00 90.00 90.00 P 43 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014339 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006817 0.00000