HEADER UNKNOWN FUNCTION 19-JAN-10 3LFZ TITLE CRYSTAL STRUCTURE OF PROTEIN MJ1225 FROM METHANOCALDOCOCCUS TITLE 2 JANNASCHII, A PUTATIVE ARCHAEAL HOMOLOG OF G-AMPK. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MJ1225; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ1225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET101-D KEYWDS MJ1225, AMPK, AMP, ADP, CBS DOMAIN, ARCHAEA, METHANOCALDOCOCCUS KEYWDS 2 JANNASCHII, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR I.GOMEZ-GARCIA,I.OYENARTE,D.KORTAZAR,L.A.MARTINEZ-CRUZ REVDAT 3 06-SEP-23 3LFZ 1 REMARK REVDAT 2 22-FEB-12 3LFZ 1 AUTHOR VERSN REVDAT 1 21-APR-10 3LFZ 0 JRNL AUTH I.GOMEZ-GARCIA,I.OYENARTE,L.A.MARTINEZ-CRUZ JRNL TITL THE CRYSTAL STRUCTURE OF PROTEIN MJ1225 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII SHOWS STRONG CONSERVATION OF JRNL TITL 3 KEY STRUCTURAL FEATURES SEEN IN THE EUKARYAL GAMMA-AMPK. JRNL REF J.MOL.BIOL. V. 65 813 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20382158 JRNL DOI 10.1016/J.JMB.2010.03.045 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.GOMEZ GARCIA,D.KORTAZAR,I.OYENARTE,J.M.MATO, REMARK 1 AUTH 2 M.L.MARTINEZ-CHANTAR,L.A.MARTINEZ-CRUZ REMARK 1 TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY REMARK 1 TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF PROTEIN MJ1225 FROM REMARK 1 TITL 3 METHANOCALDOCOCCUS JANNASCHII, A PUTATIVE ARCHAEAL HOMOLOGUE REMARK 1 TITL 4 OF GAMMA-AMPK. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 65 813 2009 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 19652347 REMARK 1 DOI 10.1107/S1744309109026475 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1168 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : -0.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.338 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.680 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2374 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3229 ; 1.230 ; 2.039 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 281 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 103 ;40.608 ;24.563 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;17.690 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1686 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1397 ; 0.966 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2288 ; 1.564 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 977 ; 0.787 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 941 ; 1.482 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 78.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3KPD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LIGAND SOAKS, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 54.57200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.50716 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.47133 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 54.57200 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.50716 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.47133 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 54.57200 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.50716 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.47133 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 54.57200 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.50716 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.47133 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 54.57200 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.50716 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.47133 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 54.57200 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.50716 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.47133 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.01432 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 94.94267 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 63.01432 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 94.94267 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 63.01432 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.94267 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 63.01432 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.94267 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 63.01432 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 94.94267 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 63.01432 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 94.94267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 211 CA GLY A 215 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 10 108.80 -49.87 REMARK 500 LYS A 34 -8.29 65.29 REMARK 500 GLU A 72 -73.12 -91.93 REMARK 500 SER A 129 -164.88 -160.18 REMARK 500 ASP A 261 159.70 -45.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 284 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KH5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROTEIN MJ1225 FROM METHANOCALDOCOCCUS REMARK 900 JANNASCHII, A PUTATIVE ARCHAEAL HOMOLOG OF G-AMPK. DBREF 3LFZ A 1 280 UNP Q58622 Y1225_METJA 1 280 SEQRES 1 A 280 MET PHE VAL ARG VAL MET LYS ILE ALA GLN ASN LYS LYS SEQRES 2 A 280 ILE VAL THR VAL TYR PRO THR THR THR ILE ARG LYS ALA SEQRES 3 A 280 LEU MET THR MET ASN GLU ASN LYS TYR ARG ARG LEU PRO SEQRES 4 A 280 VAL VAL ASN ALA GLY ASN ASN LYS VAL VAL GLY ILE ILE SEQRES 5 A 280 THR SER MET ASP ILE VAL ASP PHE MET GLY GLY GLY SER SEQRES 6 A 280 LYS TYR ASN LEU ILE ARG GLU LYS HIS GLU ARG ASN PHE SEQRES 7 A 280 LEU ALA ALA ILE ASN GLU PRO VAL ARG GLU ILE MET GLU SEQRES 8 A 280 GLU ASN VAL ILE THR LEU LYS GLU ASN ALA ASP ILE ASP SEQRES 9 A 280 GLU ALA ILE GLU THR PHE LEU THR LYS ASN VAL GLY GLY SEQRES 10 A 280 ALA PRO ILE VAL ASN ASP GLU ASN GLN LEU ILE SER LEU SEQRES 11 A 280 ILE THR GLU ARG ASP VAL ILE ARG ALA LEU LEU ASP LYS SEQRES 12 A 280 ILE ASP GLU ASN GLU VAL ILE ASP ASP TYR ILE THR ARG SEQRES 13 A 280 ASP VAL ILE VAL ALA THR PRO GLY GLU ARG LEU LYS ASP SEQRES 14 A 280 VAL ALA ARG THR MET VAL ARG ASN GLY PHE ARG ARG LEU SEQRES 15 A 280 PRO VAL VAL SER GLU GLY ARG LEU VAL GLY ILE ILE THR SEQRES 16 A 280 SER THR ASP PHE ILE LYS LEU LEU GLY SER ASP TRP ALA SEQRES 17 A 280 PHE ASN HIS MET GLN THR GLY ASN VAL ARG GLU ILE THR SEQRES 18 A 280 ASN VAL ARG MET GLU GLU ILE MET LYS ARG ASP VAL ILE SEQRES 19 A 280 THR ALA LYS GLU GLY ASP LYS LEU LYS LYS ILE ALA GLU SEQRES 20 A 280 ILE MET VAL THR ASN ASP ILE GLY ALA LEU PRO VAL VAL SEQRES 21 A 280 ASP GLU ASN LEU ARG ILE LYS GLY ILE ILE THR GLU LYS SEQRES 22 A 280 ASP VAL LEU LYS TYR PHE ALA HET ATP A 281 31 HET ADP A 282 27 HET ATP A 283 31 HET AMP A 284 23 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 2 ATP 2(C10 H16 N5 O13 P3) FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 5 AMP C10 H14 N5 O7 P FORMUL 6 HOH *16(H2 O) HELIX 1 1 ARG A 4 ILE A 8 5 5 HELIX 2 2 THR A 22 LYS A 34 1 13 HELIX 3 3 SER A 54 MET A 61 1 8 HELIX 4 4 GLY A 64 LYS A 66 5 3 HELIX 5 5 TYR A 67 GLU A 72 1 6 HELIX 6 6 ASN A 77 ILE A 82 1 6 HELIX 7 7 ASN A 83 GLU A 84 5 2 HELIX 8 8 PRO A 85 ILE A 89 5 5 HELIX 9 9 ASP A 102 LYS A 113 1 12 HELIX 10 10 GLU A 133 LEU A 141 1 9 HELIX 11 11 ASP A 142 ILE A 144 5 3 HELIX 12 12 ILE A 150 ILE A 154 5 5 HELIX 13 13 ARG A 166 GLY A 178 1 13 HELIX 14 14 SER A 196 GLY A 204 1 9 HELIX 15 15 SER A 205 THR A 214 1 10 HELIX 16 16 VAL A 217 ASN A 222 1 6 HELIX 17 17 ARG A 224 MET A 229 1 6 HELIX 18 18 LYS A 241 ASP A 253 1 13 HELIX 19 19 GLU A 272 LEU A 276 1 5 HELIX 20 20 LYS A 277 ALA A 280 5 4 SHEET 1 A 2 ARG A 37 VAL A 41 0 SHEET 2 A 2 VAL A 48 THR A 53 -1 O GLY A 50 N VAL A 40 SHEET 1 B 3 LEU A 97 LYS A 98 0 SHEET 2 B 3 GLY A 117 VAL A 121 1 O VAL A 121 N LEU A 97 SHEET 3 B 3 LEU A 127 THR A 132 -1 O SER A 129 N ILE A 120 SHEET 1 C 2 ARG A 181 SER A 186 0 SHEET 2 C 2 ARG A 189 THR A 195 -1 O GLY A 192 N VAL A 184 SHEET 1 D 2 ALA A 256 VAL A 260 0 SHEET 2 D 2 ILE A 266 THR A 271 -1 O GLY A 268 N VAL A 259 CISPEP 1 ALA A 43 GLY A 44 0 21.05 CISPEP 2 GLY A 215 ASN A 216 0 10.04 SITE 1 AC1 19 ARG A 37 ILE A 51 THR A 53 MET A 55 SITE 2 AC1 19 ASP A 56 GLU A 91 VAL A 94 ILE A 95 SITE 3 AC1 19 ASN A 114 VAL A 115 GLY A 116 GLY A 117 SITE 4 AC1 19 GLU A 133 ARG A 176 ARG A 180 ARG A 181 SITE 5 AC1 19 ADP A 282 HOH A 293 HOH A 295 SITE 1 AC2 16 THR A 155 ASP A 157 VAL A 158 ILE A 159 SITE 2 AC2 16 GLY A 178 PHE A 179 ARG A 180 ARG A 181 SITE 3 AC2 16 LEU A 182 THR A 271 LYS A 273 ASP A 274 SITE 4 AC2 16 LYS A 277 ATP A 281 HOH A 293 HOH A 295 SITE 1 AC3 15 ARG A 134 ARG A 180 ARG A 181 ILE A 193 SITE 2 AC3 15 THR A 195 THR A 197 ASP A 198 LYS A 201 SITE 3 AC3 15 VAL A 233 ILE A 234 ASP A 253 ILE A 254 SITE 4 AC3 15 GLY A 255 ALA A 256 HOH A 287 SITE 1 AC4 7 SER A 65 ASN A 68 LEU A 69 GLU A 72 SITE 2 AC4 7 LYS A 73 GLU A 88 GLU A 92 CRYST1 109.144 109.144 142.414 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009162 0.005290 0.000000 0.00000 SCALE2 0.000000 0.010580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007022 0.00000