HEADER HYDROLASE 19-JAN-10 3LG8 TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL PART OF SUBUNIT E (E101-206) FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII OF A1AO ATP SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: A-TYPE ATP SYNTHASE SUBUNIT E; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 101-206; COMPND 5 SYNONYM: V-TYPE ATP SYNTHASE SUBUNIT E, V-ATPASE SUBUNIT E; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 2190; SOURCE 5 STRAIN: ATCC 43067; SOURCE 6 GENE: ATPE, MJ0220; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET 9D KEYWDS ARCHAEA, PERIPHERAL STALK, HYDROLASE, STRUCTURAL PROTEIN, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.M.BALAKRISHNA,M.S.S.MANIMEKALAI,C.HUNKE,S.GAYEN,J.JEYAKANTHAN, AUTHOR 2 G.GRUBER REVDAT 4 01-NOV-23 3LG8 1 REMARK REVDAT 3 01-NOV-17 3LG8 1 REMARK REVDAT 2 12-FEB-14 3LG8 1 JRNL VERSN REVDAT 1 07-JUL-10 3LG8 0 JRNL AUTH A.M.BALAKRISHNA,M.S.S.MANIMEKALAI,C.HUNKE,S.GAYEN,M.ROSSLE, JRNL AUTH 2 J.JEYAKANTHAN,G.GRUBER JRNL TITL CRYSTAL AND SOLUTION STRUCTURE OF THE C-TERMINAL PART OF THE JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII A1AO ATP SYNTHASE SUBUNIT E JRNL TITL 3 REVEALED BY X-RAY DIFFRACTION AND SMALL-ANGLE X-RAY JRNL TITL 4 SCATTERING JRNL REF J.BIOENERG.BIOMEMBR. V. 42 311 2010 JRNL REFN ISSN 0145-479X JRNL PMID 20571891 JRNL DOI 10.1007/S10863-010-9298-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.K.LOKANATH,Y.MATSUURA,C.KUROISHI,N.TAKAHASHI,N.KUNISHIMA REMARK 1 TITL DIMERIC CORE STRUCTURE OF MODULAR STATOR SUBUNIT E OF REMARK 1 TITL 2 ARCHAEAL H+ -ATPASE REMARK 1 REF J.MOL.BIOL. V. 366 933 2007 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 17189637 REMARK 1 DOI 10.1016/J.JMB.2006.11.088 REMARK 2 REMARK 2 RESOLUTION. 4.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 2125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.356 REMARK 3 R VALUE (WORKING SET) : 0.353 REMARK 3 FREE R VALUE : 0.381 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 201 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 260 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.4080 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 1.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 1.483 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 108.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.803 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.735 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1042 ; 0.004 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1446 ; 0.847 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 210 ; 4.918 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 196 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 840 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 105 A 200 4 REMARK 3 1 B 105 B 200 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 472 ; 0.330 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ONLY THE BACK BONE ATOMS FOR ALL THE REMARK 3 RESIDUES WERE ASSIGNED SINCE THE SIDE CHAINS ARE NOT VISIBLE IN REMARK 3 THE ELECTRON DENSITY MAP. 2. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3LG8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057239. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2125 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.50 REMARK 200 R MERGE FOR SHELL (I) : 0.07600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 26.35 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DM9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M CESIUM CHLORIDE, 0.1M MES REMARK 280 MONOHYDRATE BUFFER (PH 6.5), 30% V/V JEFFAMINE M-600, 1MM TCEP, REMARK 280 0.1MM GLYCINE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.88100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.76200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.82150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 124.70250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.94050 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.88100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 99.76200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 124.70250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 74.82150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.94050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 101 CG CD OE1 OE2 REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 PRO A 103 CG CD REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 TYR A 105 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 ASP A 107 CG OD1 OD2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 ILE A 110 CG1 CG2 CD1 REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ILE A 113 CG1 CG2 CD1 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ASP A 115 CG OD1 OD2 REMARK 470 ILE A 118 CG1 CG2 CD1 REMARK 470 SER A 119 OG REMARK 470 LEU A 120 CG CD1 CD2 REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 ILE A 126 CG1 CG2 CD1 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 129 CG CD1 CD2 REMARK 470 ASN A 130 CG OD1 ND2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 MET A 134 CG SD CE REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 LEU A 136 CG CD1 CD2 REMARK 470 ILE A 137 CG1 CG2 CD1 REMARK 470 ASP A 138 CG OD1 OD2 REMARK 470 ASP A 139 CG OD1 OD2 REMARK 470 SER A 140 OG REMARK 470 THR A 141 OG1 CG2 REMARK 470 LEU A 142 CG CD1 CD2 REMARK 470 TRP A 143 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 143 CZ3 CH2 REMARK 470 ASN A 144 CG OD1 ND2 REMARK 470 LEU A 145 CG CD1 CD2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 VAL A 149 CG1 CG2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ASN A 151 CG OD1 ND2 REMARK 470 THR A 153 OG1 CG2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 VAL A 156 CG1 CG2 REMARK 470 THR A 157 OG1 CG2 REMARK 470 VAL A 158 CG1 CG2 REMARK 470 LEU A 159 CG CD1 CD2 REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 GLU A 163 CG CD OE1 OE2 REMARK 470 PRO A 164 CG CD REMARK 470 VAL A 165 CG1 CG2 REMARK 470 ASP A 166 CG OD1 OD2 REMARK 470 ILE A 167 CG1 CG2 CD1 REMARK 470 CYS A 171 SG REMARK 470 ILE A 172 CG1 CG2 CD1 REMARK 470 ILE A 173 CG1 CG2 CD1 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 THR A 175 OG1 CG2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 LEU A 179 CG CD1 CD2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 SER A 181 OG REMARK 470 LEU A 182 CG CD1 CD2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 ASN A 184 CG OD1 ND2 REMARK 470 SER A 185 OG REMARK 470 LEU A 186 CG CD1 CD2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 ILE A 189 CG1 CG2 CD1 REMARK 470 PHE A 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 191 CG OD1 ND2 REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 193 CG OD1 ND2 REMARK 470 LEU A 194 CG CD1 CD2 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 VAL A 196 CG1 CG2 REMARK 470 ILE A 197 CG1 CG2 CD1 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 200 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 THR A 202 OG1 CG2 REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 PHE A 206 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 PRO B 103 CG CD REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 TYR B 105 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 ASP B 107 CG OD1 OD2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 ILE B 110 CG1 CG2 CD1 REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 LEU B 112 CG CD1 CD2 REMARK 470 ILE B 113 CG1 CG2 CD1 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 ASP B 115 CG OD1 OD2 REMARK 470 ILE B 118 CG1 CG2 CD1 REMARK 470 SER B 119 OG REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LEU B 125 CG CD1 CD2 REMARK 470 ILE B 126 CG1 CG2 CD1 REMARK 470 VAL B 127 CG1 CG2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 129 CG CD1 CD2 REMARK 470 ASN B 130 CG OD1 ND2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 133 CG OD1 OD2 REMARK 470 MET B 134 CG SD CE REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 LEU B 136 CG CD1 CD2 REMARK 470 ILE B 137 CG1 CG2 CD1 REMARK 470 ASP B 138 CG OD1 OD2 REMARK 470 ASP B 139 CG OD1 OD2 REMARK 470 SER B 140 OG REMARK 470 THR B 141 OG1 CG2 REMARK 470 LEU B 142 CG CD1 CD2 REMARK 470 TRP B 143 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 143 CZ3 CH2 REMARK 470 ASN B 144 CG OD1 ND2 REMARK 470 LEU B 145 CG CD1 CD2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 470 VAL B 149 CG1 CG2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 ASN B 151 CG OD1 ND2 REMARK 470 THR B 153 OG1 CG2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 VAL B 156 CG1 CG2 REMARK 470 THR B 157 OG1 CG2 REMARK 470 VAL B 158 CG1 CG2 REMARK 470 LEU B 159 CG CD1 CD2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 PRO B 164 CG CD REMARK 470 VAL B 165 CG1 CG2 REMARK 470 ASP B 166 CG OD1 OD2 REMARK 470 ILE B 167 CG1 CG2 CD1 REMARK 470 CYS B 171 SG REMARK 470 ILE B 172 CG1 CG2 CD1 REMARK 470 ILE B 173 CG1 CG2 CD1 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 THR B 175 OG1 CG2 REMARK 470 ASP B 177 CG OD1 OD2 REMARK 470 LEU B 179 CG CD1 CD2 REMARK 470 LYS B 180 CG CD CE NZ REMARK 470 SER B 181 OG REMARK 470 LEU B 182 CG CD1 CD2 REMARK 470 ASP B 183 CG OD1 OD2 REMARK 470 ASN B 184 CG OD1 ND2 REMARK 470 SER B 185 OG REMARK 470 LEU B 186 CG CD1 CD2 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 ILE B 189 CG1 CG2 CD1 REMARK 470 PHE B 190 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN B 191 CG OD1 ND2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 193 CG OD1 ND2 REMARK 470 LEU B 194 CG CD1 CD2 REMARK 470 ASN B 195 CG OD1 ND2 REMARK 470 VAL B 196 CG1 CG2 REMARK 470 ILE B 197 CG1 CG2 CD1 REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 201 CG1 CG2 CD1 REMARK 470 THR B 202 OG1 CG2 REMARK 470 GLU B 203 CG CD OE1 OE2 REMARK 470 LYS B 204 CG CD CE NZ REMARK 470 LEU B 205 CG CD1 CD2 REMARK 470 PHE B 206 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 164 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 102 -13.31 73.76 REMARK 500 PRO A 103 57.12 -90.08 REMARK 500 ALA A 117 -70.97 -56.06 REMARK 500 ILE A 126 89.65 -67.78 REMARK 500 LYS A 131 177.42 65.43 REMARK 500 ASP A 133 -8.24 -55.88 REMARK 500 ASP A 139 37.57 -98.99 REMARK 500 LYS A 147 -75.13 -75.81 REMARK 500 ASN A 151 -80.57 -74.40 REMARK 500 THR A 153 -109.07 -79.47 REMARK 500 LYS A 154 -47.07 -153.00 REMARK 500 LYS A 160 -107.19 -133.87 REMARK 500 VAL A 165 -117.34 -135.41 REMARK 500 ASP A 166 -88.09 -133.85 REMARK 500 ILE A 167 -38.21 -134.22 REMARK 500 ILE A 201 31.27 -95.75 REMARK 500 GLU A 203 -30.00 -158.52 REMARK 500 LYS B 131 -151.24 56.76 REMARK 500 ASN B 151 -93.00 -105.17 REMARK 500 LYS B 160 -59.46 -156.44 REMARK 500 VAL B 165 -110.72 -126.69 REMARK 500 ASP B 166 -95.43 -139.04 REMARK 500 ALA B 176 74.98 -64.94 REMARK 500 LEU B 182 79.93 -102.54 REMARK 500 THR B 202 -56.50 -152.42 REMARK 500 GLU B 203 -74.40 -75.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2DM9 RELATED DB: PDB REMARK 900 RELATED ID: 2DMA RELATED DB: PDB DBREF 3LG8 A 101 206 UNP Q57673 VATE_METJA 101 206 DBREF 3LG8 B 101 206 UNP Q57673 VATE_METJA 101 206 SEQRES 1 A 106 GLU GLN PRO GLU TYR LYS ASP LYS LEU ILE LYS LEU ILE SEQRES 2 A 106 LYS ASP GLY ALA ILE SER LEU GLY GLY GLY GLU LEU ILE SEQRES 3 A 106 VAL ARG LEU ASN LYS ARG ASP MET GLU LEU ILE ASP ASP SEQRES 4 A 106 SER THR LEU TRP ASN LEU GLU LYS GLU VAL GLU ASN ALA SEQRES 5 A 106 THR LYS LYS VAL THR VAL LEU LYS LYS GLY GLU PRO VAL SEQRES 6 A 106 ASP ILE ALA GLY GLY CYS ILE ILE GLU THR ALA ASP GLY SEQRES 7 A 106 LEU LYS SER LEU ASP ASN SER LEU GLU ALA ILE PHE ASN SEQRES 8 A 106 ARG ASN LEU ASN VAL ILE ARG ALA ARG ILE THR GLU LYS SEQRES 9 A 106 LEU PHE SEQRES 1 B 106 GLU GLN PRO GLU TYR LYS ASP LYS LEU ILE LYS LEU ILE SEQRES 2 B 106 LYS ASP GLY ALA ILE SER LEU GLY GLY GLY GLU LEU ILE SEQRES 3 B 106 VAL ARG LEU ASN LYS ARG ASP MET GLU LEU ILE ASP ASP SEQRES 4 B 106 SER THR LEU TRP ASN LEU GLU LYS GLU VAL GLU ASN ALA SEQRES 5 B 106 THR LYS LYS VAL THR VAL LEU LYS LYS GLY GLU PRO VAL SEQRES 6 B 106 ASP ILE ALA GLY GLY CYS ILE ILE GLU THR ALA ASP GLY SEQRES 7 B 106 LEU LYS SER LEU ASP ASN SER LEU GLU ALA ILE PHE ASN SEQRES 8 B 106 ARG ASN LEU ASN VAL ILE ARG ALA ARG ILE THR GLU LYS SEQRES 9 B 106 LEU PHE HELIX 1 1 ASP A 107 GLY A 121 1 15 HELIX 2 2 LYS A 131 LEU A 136 1 6 HELIX 3 3 GLU A 148 THR A 153 1 6 HELIX 4 4 ASN A 184 ILE A 189 1 6 HELIX 5 5 ILE A 189 ILE A 201 1 13 HELIX 6 6 ASP B 107 LYS B 114 1 8 HELIX 7 7 ASN B 130 SER B 140 1 11 HELIX 8 8 THR B 141 GLU B 146 1 6 HELIX 9 9 LYS B 147 ASN B 151 5 5 HELIX 10 10 ASN B 184 ILE B 189 1 6 HELIX 11 11 ILE B 189 ARG B 200 1 12 SHEET 1 A 2 CYS B 171 ILE B 172 0 SHEET 2 A 2 LEU B 179 LYS B 180 -1 O LYS B 180 N CYS B 171 CRYST1 73.658 73.658 149.643 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013576 0.007838 0.000000 0.00000 SCALE2 0.000000 0.015677 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006683 0.00000