HEADER TRANSFERASE 20-JAN-10 3LGB TITLE CRYSTAL STRUCTURE OF THE FE-S DOMAIN OF THE YEAST DNA PRIMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE LARGE SUBUNIT; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FE-S DOMAIN; COMPND 5 SYNONYM: DNA PRIMASE 58 KDA SUBUNIT, DNA POLYMERASE ALPHA:PRIMASE COMPND 6 COMPLEX P58 SUBUNIT, POL ALPHA-PRIMASE COMPLEX P58 SUBUNIT, DNA COMPND 7 POLYMERASE-PRIMASE COMPLEX P58 SUBUNIT; COMPND 8 EC: 2.7.7.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PRI2, YKL045W, YKL258; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSF DUET KEYWDS DNA PRIMASE, FE-S CLUSTER, DNA-BINDING, DNA-DIRECTED RNA POLYMERASE, KEYWDS 2 IRON, IRON-SULFUR, METAL-BINDING, NUCLEOTIDYLTRANSFERASE, PRIMOSOME, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.SAUGUET,L.PELLEGRINI REVDAT 4 13-NOV-24 3LGB 1 REMARK SEQADV LINK REVDAT 3 05-OCT-11 3LGB 1 REMARK VERSN SEQADV REVDAT 2 08-SEP-10 3LGB 1 REMARK JRNL REVDAT 1 21-APR-10 3LGB 0 JRNL AUTH L.SAUGUET,S.KLINGE,R.L.PERERA,J.D.MAMAN,L.PELLEGRINI JRNL TITL SHARED ACTIVE SITE ARCHITECTURE BETWEEN THE LARGE SUBUNIT OF JRNL TITL 2 EUKARYOTIC PRIMASE AND DNA PHOTOLYASE JRNL REF PLOS ONE V. 5 10083 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20404922 JRNL DOI 10.1371/JOURNAL.PONE.0010083 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 88274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4430 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.58 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 6338 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1765 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5988 REMARK 3 BIN R VALUE (WORKING SET) : 0.1759 REMARK 3 BIN FREE R VALUE : 0.1874 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 350 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3091 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15480 REMARK 3 B22 (A**2) : -1.15480 REMARK 3 B33 (A**2) : 2.30960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.155 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3304 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4478 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1225 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 85 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 483 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3304 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 418 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4322 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.47 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.88 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 316 A 511 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2315 4.3900 16.6716 REMARK 3 T TENSOR REMARK 3 T11: -0.0332 T22: -0.0580 REMARK 3 T33: -0.0547 T12: -0.0013 REMARK 3 T13: 0.0026 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5064 L22: 1.3578 REMARK 3 L33: 1.4288 L12: -0.2177 REMARK 3 L13: -0.4680 L23: 0.7143 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: -0.0139 S13: -0.0182 REMARK 3 S21: 0.1010 S22: 0.0522 S23: -0.0577 REMARK 3 S31: 0.0283 S32: -0.0065 S33: -0.0182 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 317 B 512 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4778 34.0622 -0.0666 REMARK 3 T TENSOR REMARK 3 T11: -0.0097 T22: -0.0423 REMARK 3 T33: -0.0383 T12: -0.0003 REMARK 3 T13: 0.0121 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 1.1314 L22: 0.6848 REMARK 3 L33: 1.0921 L12: 0.5507 REMARK 3 L13: -0.8310 L23: -0.7934 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: 0.0169 S13: 0.0147 REMARK 3 S21: 0.1109 S22: 0.0928 S23: 0.0620 REMARK 3 S31: -0.0524 S32: -0.0945 S33: -0.0863 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LGB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057242. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 29.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.40 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.10100 REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 20.70 REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : 0.77800 REMARK 200 FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISHCL PH 7.5, 1MM ZN ACETATE, REMARK 280 11% ETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.16000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.32000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 70.74000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.90000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.58000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 483 REMARK 465 SER A 484 REMARK 465 ALA A 485 REMARK 465 SER A 486 REMARK 465 ALA A 487 REMARK 465 ASP A 488 REMARK 465 LEU A 489 REMARK 465 GLU A 490 REMARK 465 ILE A 491 REMARK 465 GLY A 492 REMARK 465 GLU A 493 REMARK 465 GLN A 494 REMARK 465 LYS A 512 REMARK 465 SER B 316 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 498 38.94 -143.46 REMARK 500 ALA B 498 39.29 -141.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 514 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 336 SG REMARK 620 2 SF4 A 514 S1 108.5 REMARK 620 3 SF4 A 514 S2 117.7 104.3 REMARK 620 4 SF4 A 514 S3 113.4 106.1 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 514 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 417 SG REMARK 620 2 SF4 A 514 S2 104.3 REMARK 620 3 SF4 A 514 S3 121.7 106.0 REMARK 620 4 SF4 A 514 S4 113.1 107.0 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 514 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 434 SG REMARK 620 2 SF4 A 514 S1 116.6 REMARK 620 3 SF4 A 514 S3 111.5 106.5 REMARK 620 4 SF4 A 514 S4 110.5 106.3 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 514 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 474 SG REMARK 620 2 SF4 A 514 S1 119.4 REMARK 620 3 SF4 A 514 S2 113.4 104.1 REMARK 620 4 SF4 A 514 S4 106.3 105.2 107.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 515 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 171 O REMARK 620 2 HOH B 298 O 81.7 REMARK 620 3 HOH B 299 O 170.5 92.6 REMARK 620 4 HOH B 300 O 78.1 81.6 93.6 REMARK 620 5 HOH B 301 O 87.9 161.2 95.5 81.0 REMARK 620 6 HIS B 348 NE2 93.0 95.8 95.2 171.0 100.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 514 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 336 SG REMARK 620 2 SF4 B 514 S2 117.1 REMARK 620 3 SF4 B 514 S3 109.4 104.0 REMARK 620 4 SF4 B 514 S4 114.1 105.3 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 514 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 417 SG REMARK 620 2 SF4 B 514 S1 112.7 REMARK 620 3 SF4 B 514 S2 103.4 107.2 REMARK 620 4 SF4 B 514 S4 121.1 104.8 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 514 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 434 SG REMARK 620 2 SF4 B 514 S1 110.4 REMARK 620 3 SF4 B 514 S3 115.2 106.1 REMARK 620 4 SF4 B 514 S4 113.2 104.5 106.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 514 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 474 SG REMARK 620 2 SF4 B 514 S1 105.7 REMARK 620 3 SF4 B 514 S2 114.1 107.6 REMARK 620 4 SF4 B 514 S3 118.2 105.6 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SF4 B 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 DBREF 3LGB A 317 512 UNP P20457 PRI2_YEAST 317 512 DBREF 3LGB B 317 512 UNP P20457 PRI2_YEAST 317 512 SEQADV 3LGB SER A 316 UNP P20457 EXPRESSION TAG SEQADV 3LGB A UNP P20457 ARG 382 DELETION SEQADV 3LGB A UNP P20457 ASN 383 DELETION SEQADV 3LGB A UNP P20457 GLY 384 DELETION SEQADV 3LGB SER B 316 UNP P20457 EXPRESSION TAG SEQADV 3LGB B UNP P20457 ARG 382 DELETION SEQADV 3LGB B UNP P20457 ASN 383 DELETION SEQADV 3LGB B UNP P20457 GLY 384 DELETION SEQRES 1 A 194 SER ASP GLU ILE ASN ALA GLN SER VAL TRP SER GLU GLU SEQRES 2 A 194 ILE SER SER ASN TYR PRO LEU CYS ILE LYS ASN LEU MSE SEQRES 3 A 194 GLU GLY LEU LYS LYS ASN HIS HIS LEU ARG TYR TYR GLY SEQRES 4 A 194 ARG GLN GLN LEU SER LEU PHE LEU LYS GLY ILE GLY LEU SEQRES 5 A 194 SER ALA ASP GLU ALA LEU LYS PHE TRP SER GLU ALA PHE SEQRES 6 A 194 THR ASN MSE THR MSE GLU LYS PHE ASN LYS GLU TYR ARG SEQRES 7 A 194 TYR SER PHE ARG HIS ASN TYR GLY LEU GLU GLY ASN ARG SEQRES 8 A 194 ILE ASN TYR LYS PRO TRP ASP CYS HIS THR ILE LEU SER SEQRES 9 A 194 LYS PRO ARG PRO GLY ARG GLY ASP TYR HIS GLY CYS PRO SEQRES 10 A 194 PHE ARG ASP TRP SER HIS GLU ARG LEU SER ALA GLU LEU SEQRES 11 A 194 ARG SER MSE LYS LEU THR GLN ALA GLN ILE ILE SER VAL SEQRES 12 A 194 LEU ASP SER CYS GLN LYS GLY GLU TYR THR ILE ALA CYS SEQRES 13 A 194 THR LYS VAL PHE GLU MSE THR HIS ASN SER ALA SER ALA SEQRES 14 A 194 ASP LEU GLU ILE GLY GLU GLN THR HIS ILE ALA HIS PRO SEQRES 15 A 194 ASN LEU TYR PHE GLU ARG SER ARG GLN LEU GLN LYS SEQRES 1 B 194 SER ASP GLU ILE ASN ALA GLN SER VAL TRP SER GLU GLU SEQRES 2 B 194 ILE SER SER ASN TYR PRO LEU CYS ILE LYS ASN LEU MSE SEQRES 3 B 194 GLU GLY LEU LYS LYS ASN HIS HIS LEU ARG TYR TYR GLY SEQRES 4 B 194 ARG GLN GLN LEU SER LEU PHE LEU LYS GLY ILE GLY LEU SEQRES 5 B 194 SER ALA ASP GLU ALA LEU LYS PHE TRP SER GLU ALA PHE SEQRES 6 B 194 THR ASN MSE THR MSE GLU LYS PHE ASN LYS GLU TYR ARG SEQRES 7 B 194 TYR SER PHE ARG HIS ASN TYR GLY LEU GLU GLY ASN ARG SEQRES 8 B 194 ILE ASN TYR LYS PRO TRP ASP CYS HIS THR ILE LEU SER SEQRES 9 B 194 LYS PRO ARG PRO GLY ARG GLY ASP TYR HIS GLY CYS PRO SEQRES 10 B 194 PHE ARG ASP TRP SER HIS GLU ARG LEU SER ALA GLU LEU SEQRES 11 B 194 ARG SER MSE LYS LEU THR GLN ALA GLN ILE ILE SER VAL SEQRES 12 B 194 LEU ASP SER CYS GLN LYS GLY GLU TYR THR ILE ALA CYS SEQRES 13 B 194 THR LYS VAL PHE GLU MSE THR HIS ASN SER ALA SER ALA SEQRES 14 B 194 ASP LEU GLU ILE GLY GLU GLN THR HIS ILE ALA HIS PRO SEQRES 15 B 194 ASN LEU TYR PHE GLU ARG SER ARG GLN LEU GLN LYS MODRES 3LGB MSE A 341 MET SELENOMETHIONINE MODRES 3LGB MSE A 386 MET SELENOMETHIONINE MODRES 3LGB MSE A 388 MET SELENOMETHIONINE MODRES 3LGB MSE A 451 MET SELENOMETHIONINE MODRES 3LGB MSE A 480 MET SELENOMETHIONINE MODRES 3LGB MSE B 341 MET SELENOMETHIONINE MODRES 3LGB MSE B 386 MET SELENOMETHIONINE MODRES 3LGB MSE B 388 MET SELENOMETHIONINE MODRES 3LGB MSE B 451 MET SELENOMETHIONINE MODRES 3LGB MSE B 480 MET SELENOMETHIONINE HET MSE A 341 8 HET MSE A 386 8 HET MSE A 388 8 HET MSE A 451 8 HET MSE A 480 8 HET MSE B 341 8 HET MSE B 386 8 HET MSE B 388 13 HET MSE B 451 13 HET MSE B 480 8 HET SF4 A 514 8 HET EPE A 1 15 HET EPE A 513 15 HET SF4 B 514 8 HET ZN B 515 1 HET ZN B 516 1 HET GOL B 1 6 HETNAM MSE SELENOMETHIONINE HETNAM SF4 IRON/SULFUR CLUSTER HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN EPE HEPES HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 SF4 2(FE4 S4) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 7 ZN 2(ZN 2+) FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *496(H2 O) HELIX 1 1 GLN A 322 TRP A 325 5 4 HELIX 2 2 SER A 326 SER A 331 1 6 HELIX 3 3 PRO A 334 HIS A 348 1 15 HELIX 4 4 ARG A 351 ILE A 365 1 15 HELIX 5 5 SER A 368 PHE A 380 1 13 HELIX 6 6 THR A 387 TYR A 395 1 9 HELIX 7 7 TYR A 395 TYR A 403 1 9 HELIX 8 8 ASP A 416 LYS A 423 1 8 HELIX 9 9 CYS A 434 TRP A 439 1 6 HELIX 10 10 SER A 440 MSE A 451 1 12 HELIX 11 11 THR A 454 LYS A 467 1 14 HELIX 12 12 GLU A 469 HIS A 482 1 14 HELIX 13 13 HIS A 499 GLN A 511 1 13 HELIX 14 14 GLN B 322 TRP B 325 5 4 HELIX 15 15 SER B 326 SER B 331 1 6 HELIX 16 16 PRO B 334 HIS B 348 1 15 HELIX 17 17 ARG B 351 ILE B 365 1 15 HELIX 18 18 SER B 368 PHE B 380 1 13 HELIX 19 19 THR B 387 TYR B 395 1 9 HELIX 20 20 TYR B 395 TYR B 403 1 9 HELIX 21 21 ASP B 416 LYS B 423 1 8 HELIX 22 22 CYS B 434 TRP B 439 1 6 HELIX 23 23 SER B 440 MSE B 451 1 12 HELIX 24 24 THR B 454 LYS B 467 1 14 HELIX 25 25 GLU B 469 ASN B 483 1 15 HELIX 26 26 HIS B 499 LEU B 510 1 12 LINK C LEU A 340 N MSE A 341 1555 1555 1.35 LINK C MSE A 341 N GLU A 342 1555 1555 1.35 LINK C ASN A 385 N MSE A 386 1555 1555 1.32 LINK C MSE A 386 N THR A 387 1555 1555 1.33 LINK C THR A 387 N MSE A 388 1555 1555 1.34 LINK C MSE A 388 N GLU A 389 1555 1555 1.35 LINK C SER A 450 N MSE A 451 1555 1555 1.34 LINK C MSE A 451 N LYS A 452 1555 1555 1.36 LINK C GLU A 479 N MSE A 480 1555 1555 1.33 LINK C MSE A 480 N THR A 481 1555 1555 1.33 LINK C LEU B 340 N MSE B 341 1555 1555 1.34 LINK C MSE B 341 N GLU B 342 1555 1555 1.35 LINK C ASN B 385 N MSE B 386 1555 1555 1.34 LINK C MSE B 386 N THR B 387 1555 1555 1.35 LINK C THR B 387 N MSE B 388 1555 1555 1.35 LINK C MSE B 388 N GLU B 389 1555 1555 1.36 LINK C SER B 450 N MSE B 451 1555 1555 1.36 LINK C MSE B 451 N LYS B 452 1555 1555 1.35 LINK C GLU B 479 N MSE B 480 1555 1555 1.35 LINK C MSE B 480 N THR B 481 1555 1555 1.36 LINK SG CYS A 336 FE4 SF4 A 514 1555 1555 2.30 LINK SG CYS A 417 FE1 SF4 A 514 1555 1555 2.26 LINK SG CYS A 434 FE2 SF4 A 514 1555 1555 2.31 LINK SG CYS A 474 FE3 SF4 A 514 1555 1555 2.30 LINK O HOH B 171 ZN ZN B 515 1555 1555 2.17 LINK O HOH B 298 ZN ZN B 515 1555 1555 2.01 LINK O HOH B 299 ZN ZN B 515 1555 1555 2.08 LINK O HOH B 300 ZN ZN B 515 1555 1555 2.16 LINK O HOH B 301 ZN ZN B 515 1555 1555 2.05 LINK SG CYS B 336 FE1 SF4 B 514 1555 1555 2.29 LINK NE2 HIS B 348 ZN ZN B 515 1555 1555 2.05 LINK OE2 GLU B 389 ZN ZN B 516 1555 1555 1.94 LINK SG CYS B 417 FE3 SF4 B 514 1555 1555 2.25 LINK SG CYS B 434 FE2 SF4 B 514 1555 1555 2.31 LINK SG CYS B 474 FE4 SF4 B 514 1555 1555 2.29 SITE 1 AC1 6 CYS A 336 CYS A 417 CYS A 434 PHE A 436 SITE 2 AC1 6 CYS A 474 PRO A 500 SITE 1 AC2 10 HOH A 84 HOH A 142 HOH A 302 HOH A 309 SITE 2 AC2 10 LYS A 346 ARG A 425 ARG A 437 GLY A 468 SITE 3 AC2 10 TYR A 470 THR A 471 SITE 1 AC3 12 HOH A 73 HOH A 276 HIS A 401 GLU A 406 SITE 2 AC3 12 GLY A 407 ASN A 408 TYR A 412 HOH A 536 SITE 3 AC3 12 HOH B 120 HOH B 136 HIS B 496 ALA B 498 SITE 1 AC4 6 CYS B 336 CYS B 417 CYS B 434 PHE B 436 SITE 2 AC4 6 CYS B 474 PRO B 500 SITE 1 AC5 7 HOH B 171 HOH B 298 HOH B 299 HOH B 300 SITE 2 AC5 7 HOH B 301 LYS B 345 HIS B 348 SITE 1 AC6 4 HIS A 348 HIS A 418 GLU B 389 GLU B 490 SITE 1 AC7 6 LEU B 373 LYS B 374 SER B 377 ARG B 396 SITE 2 AC7 6 HOH B 542 HOH B 565 CRYST1 86.570 86.570 141.480 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011551 0.006669 0.000000 0.00000 SCALE2 0.000000 0.013338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007068 0.00000