HEADER HYDROLASE 20-JAN-10 3LGD TITLE CRYSTAL STRUCTURE OF HUMAN ADENOSINE DEAMINASE GROWTH FACTOR, TITLE 2 ADENOSINE DEAMINASE TYPE 2 (ADA2) CAVEAT 3LGD NAG B 550 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSINE DEAMINASE CECR1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CAT EYE SYNDROME CRITICAL REGION PROTEIN 1; COMPND 5 EC: 3.5.4.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADA2, CECR1, CECR1/ADA2, IDGFL; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7215; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PRMHA3, PS2NEO; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRMHA3-ADA2 KEYWDS TIM BARREL, DIMERIZATION AND RECEPTOR BINDING DOMAINS, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, GROWTH FACTOR, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR A.V.ZAVIALOV REVDAT 3 29-JUL-20 3LGD 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE REVDAT 2 19-MAY-10 3LGD 1 JRNL REVDAT 1 09-FEB-10 3LGD 0 JRNL AUTH A.V.ZAVIALOV,X.YU,D.SPILLMANN,G.LAUVAU,A.V.ZAVIALOV JRNL TITL STRUCTURAL BASIS FOR THE GROWTH FACTOR ACTIVITY OF HUMAN JRNL TITL 2 ADENOSINE DEAMINASE ADA2. JRNL REF J.BIOL.CHEM. V. 285 12367 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20147294 JRNL DOI 10.1074/JBC.M109.083527 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 82592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4276 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 308 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 789 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : -0.22000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : -0.27000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8158 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11032 ; 1.379 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 962 ; 5.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 372 ;31.040 ;23.065 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1448 ;16.120 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;18.139 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1220 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6094 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4814 ; 0.718 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7825 ; 1.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3344 ; 2.356 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3207 ; 3.778 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LGD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057244. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.04 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101215 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 73.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : 0.43100 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% MPD, 5% PEG 8000, 0.1M CACODYLATE, REMARK 280 PH 6.04, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 485 REMARK 465 GLY A 486 REMARK 465 SER A 487 REMARK 465 LEU A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 ILE A 491 REMARK 465 LEU A 492 REMARK 465 ASP A 493 REMARK 465 ALA A 494 REMARK 465 GLN A 495 REMARK 465 LYS A 496 REMARK 465 MET A 497 REMARK 465 VAL A 498 REMARK 465 TRP A 499 REMARK 465 ASN A 500 REMARK 465 HIS A 501 REMARK 465 ARG A 502 REMARK 465 HIS A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 HIS A 508 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 LYS B 485 REMARK 465 GLY B 486 REMARK 465 SER B 487 REMARK 465 LEU B 488 REMARK 465 HIS B 489 REMARK 465 HIS B 490 REMARK 465 ILE B 491 REMARK 465 LEU B 492 REMARK 465 ASP B 493 REMARK 465 ALA B 494 REMARK 465 GLN B 495 REMARK 465 LYS B 496 REMARK 465 MET B 497 REMARK 465 VAL B 498 REMARK 465 TRP B 499 REMARK 465 ASN B 500 REMARK 465 HIS B 501 REMARK 465 ARG B 502 REMARK 465 HIS B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 465 HIS B 506 REMARK 465 HIS B 507 REMARK 465 HIS B 508 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 324 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 372 O HOH A 841 2.04 REMARK 500 NH2 ARG B 199 O HOH B 805 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 801 O HOH B 838 1655 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 101 -60.05 -100.40 REMARK 500 SER A 130 -163.49 -113.25 REMARK 500 HIS A 358 -68.12 72.23 REMARK 500 ASP A 415 -85.21 71.15 REMARK 500 ASN B 101 -66.38 -100.70 REMARK 500 HIS B 358 -72.85 71.31 REMARK 500 ASP B 415 -85.31 74.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 850 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HIS A 88 NE2 118.1 REMARK 620 3 HIS A 330 NE2 86.5 101.8 REMARK 620 4 ASP A 415 OD1 101.6 71.8 171.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 850 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 86 NE2 REMARK 620 2 HIS B 88 NE2 120.8 REMARK 620 3 HIS B 330 NE2 91.4 95.3 REMARK 620 4 ASP B 415 OD1 88.5 86.8 177.7 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LGG RELATED DB: PDB DBREF 3LGD A 3 485 UNP Q9NZK5 CECR1_HUMAN 29 511 DBREF 3LGD B 3 485 UNP Q9NZK5 CECR1_HUMAN 29 511 SEQADV 3LGD GLY A 1 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLY A 2 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLY A 486 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD SER A 487 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LEU A 488 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 489 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 490 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ILE A 491 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LEU A 492 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ASP A 493 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ALA A 494 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLN A 495 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LYS A 496 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD MET A 497 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD VAL A 498 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD TRP A 499 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ASN A 500 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 501 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ARG A 502 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 503 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 504 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 505 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 506 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 507 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS A 508 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLY B 1 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLY B 2 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLY B 486 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD SER B 487 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LEU B 488 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 489 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 490 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ILE B 491 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LEU B 492 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ASP B 493 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ALA B 494 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD GLN B 495 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD LYS B 496 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD MET B 497 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD VAL B 498 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD TRP B 499 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ASN B 500 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 501 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD ARG B 502 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 503 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 504 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 505 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 506 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 507 UNP Q9NZK5 EXPRESSION TAG SEQADV 3LGD HIS B 508 UNP Q9NZK5 EXPRESSION TAG SEQRES 1 A 508 GLY GLY SER ILE ASP GLU THR ARG ALA HIS LEU LEU LEU SEQRES 2 A 508 LYS GLU LYS MET MET ARG LEU GLY GLY ARG LEU VAL LEU SEQRES 3 A 508 ASN THR LYS GLU GLU LEU ALA ASN GLU ARG LEU MET THR SEQRES 4 A 508 LEU LYS ILE ALA GLU MET LYS GLU ALA MET ARG THR LEU SEQRES 5 A 508 ILE PHE PRO PRO SER MET HIS PHE PHE GLN ALA LYS HIS SEQRES 6 A 508 LEU ILE GLU ARG SER GLN VAL PHE ASN ILE LEU ARG MET SEQRES 7 A 508 MET PRO LYS GLY ALA ALA LEU HIS LEU HIS ASP ILE GLY SEQRES 8 A 508 ILE VAL THR MET ASP TRP LEU VAL ARG ASN VAL THR TYR SEQRES 9 A 508 ARG PRO HIS CYS HIS ILE CYS PHE THR PRO ARG GLY ILE SEQRES 10 A 508 MET GLN PHE ARG PHE ALA HIS PRO THR PRO ARG PRO SER SEQRES 11 A 508 GLU LYS CYS SER LYS TRP ILE LEU LEU GLU ASP TYR ARG SEQRES 12 A 508 LYS ARG VAL GLN ASN VAL THR GLU PHE ASP ASP SER LEU SEQRES 13 A 508 LEU ARG ASN PHE THR LEU VAL THR GLN HIS PRO GLU VAL SEQRES 14 A 508 ILE TYR THR ASN GLN ASN VAL VAL TRP SER LYS PHE GLU SEQRES 15 A 508 THR ILE PHE PHE THR ILE SER GLY LEU ILE HIS TYR ALA SEQRES 16 A 508 PRO VAL PHE ARG ASP TYR VAL PHE ARG SER MET GLN GLU SEQRES 17 A 508 PHE TYR GLU ASP ASN VAL LEU TYR MET GLU ILE ARG ALA SEQRES 18 A 508 ARG LEU LEU PRO VAL TYR GLU LEU SER GLY GLU HIS HIS SEQRES 19 A 508 ASP GLU GLU TRP SER VAL LYS THR TYR GLN GLU VAL ALA SEQRES 20 A 508 GLN LYS PHE VAL GLU THR HIS PRO GLU PHE ILE GLY ILE SEQRES 21 A 508 LYS ILE ILE TYR SER ASP HIS ARG SER LYS ASP VAL ALA SEQRES 22 A 508 VAL ILE ALA GLU SER ILE ARG MET ALA MET GLY LEU ARG SEQRES 23 A 508 ILE LYS PHE PRO THR VAL VAL ALA GLY PHE ASP LEU VAL SEQRES 24 A 508 GLY HIS GLU ASP THR GLY HIS SER LEU HIS ASP TYR LYS SEQRES 25 A 508 GLU ALA LEU MET ILE PRO ALA LYS ASP GLY VAL LYS LEU SEQRES 26 A 508 PRO TYR PHE PHE HIS ALA GLY GLU THR ASP TRP GLN GLY SEQRES 27 A 508 THR SER ILE ASP ARG ASN ILE LEU ASP ALA LEU MET LEU SEQRES 28 A 508 ASN THR THR ARG ILE GLY HIS GLY PHE ALA LEU SER LYS SEQRES 29 A 508 HIS PRO ALA VAL ARG THR TYR SER TRP LYS LYS ASP ILE SEQRES 30 A 508 PRO ILE GLU VAL CYS PRO ILE SER ASN GLN VAL LEU LYS SEQRES 31 A 508 LEU VAL SER ASP LEU ARG ASN HIS PRO VAL ALA THR LEU SEQRES 32 A 508 MET ALA THR GLY HIS PRO MET VAL ILE SER SER ASP ASP SEQRES 33 A 508 PRO ALA MET PHE GLY ALA LYS GLY LEU SER TYR ASP PHE SEQRES 34 A 508 TYR GLU VAL PHE MET GLY ILE GLY GLY MET LYS ALA ASP SEQRES 35 A 508 LEU ARG THR LEU LYS GLN LEU ALA MET ASN SER ILE LYS SEQRES 36 A 508 TYR SER THR LEU LEU GLU SER GLU LYS ASN THR PHE MET SEQRES 37 A 508 GLU ILE TRP LYS LYS ARG TRP ASP LYS PHE ILE ALA ASP SEQRES 38 A 508 VAL ALA THR LYS GLY SER LEU HIS HIS ILE LEU ASP ALA SEQRES 39 A 508 GLN LYS MET VAL TRP ASN HIS ARG HIS HIS HIS HIS HIS SEQRES 40 A 508 HIS SEQRES 1 B 508 GLY GLY SER ILE ASP GLU THR ARG ALA HIS LEU LEU LEU SEQRES 2 B 508 LYS GLU LYS MET MET ARG LEU GLY GLY ARG LEU VAL LEU SEQRES 3 B 508 ASN THR LYS GLU GLU LEU ALA ASN GLU ARG LEU MET THR SEQRES 4 B 508 LEU LYS ILE ALA GLU MET LYS GLU ALA MET ARG THR LEU SEQRES 5 B 508 ILE PHE PRO PRO SER MET HIS PHE PHE GLN ALA LYS HIS SEQRES 6 B 508 LEU ILE GLU ARG SER GLN VAL PHE ASN ILE LEU ARG MET SEQRES 7 B 508 MET PRO LYS GLY ALA ALA LEU HIS LEU HIS ASP ILE GLY SEQRES 8 B 508 ILE VAL THR MET ASP TRP LEU VAL ARG ASN VAL THR TYR SEQRES 9 B 508 ARG PRO HIS CYS HIS ILE CYS PHE THR PRO ARG GLY ILE SEQRES 10 B 508 MET GLN PHE ARG PHE ALA HIS PRO THR PRO ARG PRO SER SEQRES 11 B 508 GLU LYS CYS SER LYS TRP ILE LEU LEU GLU ASP TYR ARG SEQRES 12 B 508 LYS ARG VAL GLN ASN VAL THR GLU PHE ASP ASP SER LEU SEQRES 13 B 508 LEU ARG ASN PHE THR LEU VAL THR GLN HIS PRO GLU VAL SEQRES 14 B 508 ILE TYR THR ASN GLN ASN VAL VAL TRP SER LYS PHE GLU SEQRES 15 B 508 THR ILE PHE PHE THR ILE SER GLY LEU ILE HIS TYR ALA SEQRES 16 B 508 PRO VAL PHE ARG ASP TYR VAL PHE ARG SER MET GLN GLU SEQRES 17 B 508 PHE TYR GLU ASP ASN VAL LEU TYR MET GLU ILE ARG ALA SEQRES 18 B 508 ARG LEU LEU PRO VAL TYR GLU LEU SER GLY GLU HIS HIS SEQRES 19 B 508 ASP GLU GLU TRP SER VAL LYS THR TYR GLN GLU VAL ALA SEQRES 20 B 508 GLN LYS PHE VAL GLU THR HIS PRO GLU PHE ILE GLY ILE SEQRES 21 B 508 LYS ILE ILE TYR SER ASP HIS ARG SER LYS ASP VAL ALA SEQRES 22 B 508 VAL ILE ALA GLU SER ILE ARG MET ALA MET GLY LEU ARG SEQRES 23 B 508 ILE LYS PHE PRO THR VAL VAL ALA GLY PHE ASP LEU VAL SEQRES 24 B 508 GLY HIS GLU ASP THR GLY HIS SER LEU HIS ASP TYR LYS SEQRES 25 B 508 GLU ALA LEU MET ILE PRO ALA LYS ASP GLY VAL LYS LEU SEQRES 26 B 508 PRO TYR PHE PHE HIS ALA GLY GLU THR ASP TRP GLN GLY SEQRES 27 B 508 THR SER ILE ASP ARG ASN ILE LEU ASP ALA LEU MET LEU SEQRES 28 B 508 ASN THR THR ARG ILE GLY HIS GLY PHE ALA LEU SER LYS SEQRES 29 B 508 HIS PRO ALA VAL ARG THR TYR SER TRP LYS LYS ASP ILE SEQRES 30 B 508 PRO ILE GLU VAL CYS PRO ILE SER ASN GLN VAL LEU LYS SEQRES 31 B 508 LEU VAL SER ASP LEU ARG ASN HIS PRO VAL ALA THR LEU SEQRES 32 B 508 MET ALA THR GLY HIS PRO MET VAL ILE SER SER ASP ASP SEQRES 33 B 508 PRO ALA MET PHE GLY ALA LYS GLY LEU SER TYR ASP PHE SEQRES 34 B 508 TYR GLU VAL PHE MET GLY ILE GLY GLY MET LYS ALA ASP SEQRES 35 B 508 LEU ARG THR LEU LYS GLN LEU ALA MET ASN SER ILE LYS SEQRES 36 B 508 TYR SER THR LEU LEU GLU SER GLU LYS ASN THR PHE MET SEQRES 37 B 508 GLU ILE TRP LYS LYS ARG TRP ASP LYS PHE ILE ALA ASP SEQRES 38 B 508 VAL ALA THR LYS GLY SER LEU HIS HIS ILE LEU ASP ALA SEQRES 39 B 508 GLN LYS MET VAL TRP ASN HIS ARG HIS HIS HIS HIS HIS SEQRES 40 B 508 HIS MODRES 3LGD ASN B 101 ASN GLYCOSYLATION SITE MODRES 3LGD ASN A 101 ASN GLYCOSYLATION SITE MODRES 3LGD ASN A 159 ASN GLYCOSYLATION SITE MODRES 3LGD ASN B 159 ASN GLYCOSYLATION SITE MODRES 3LGD ASN A 352 ASN GLYCOSYLATION SITE MODRES 3LGD ASN B 352 ASN GLYCOSYLATION SITE HET NAG A 550 14 HET NAG A 650 14 HET NAG A 750 14 HET ZN A 850 1 HET EDO A 950 4 HET UNX A 951 1 HET NAG B 550 14 HET NAG B 650 14 HET NAG B 750 14 HET ZN B 850 1 HET EDO B 950 4 HET UNX B 951 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM UNX UNKNOWN ATOM OR ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 UNX 2(X) FORMUL 15 HOH *789(H2 O) HELIX 1 1 SER A 3 ARG A 19 1 17 HELIX 2 2 ASN A 27 LEU A 52 1 26 HELIX 3 3 PHE A 54 MET A 58 5 5 HELIX 4 4 HIS A 59 GLU A 68 1 10 HELIX 5 5 SER A 70 MET A 79 1 10 HELIX 6 6 THR A 94 ASN A 101 1 8 HELIX 7 7 VAL A 102 ARG A 105 5 4 HELIX 8 8 LEU A 139 ARG A 145 1 7 HELIX 9 9 ASN A 148 PHE A 160 1 13 HELIX 10 10 HIS A 166 TYR A 171 1 6 HELIX 11 11 ASN A 173 HIS A 193 1 21 HELIX 12 12 TYR A 194 ASP A 212 1 19 HELIX 13 13 ASP A 235 HIS A 254 1 20 HELIX 14 14 ASP A 271 PHE A 289 1 19 HELIX 15 15 LEU A 308 ASP A 310 5 3 HELIX 16 16 TYR A 311 MET A 316 1 6 HELIX 17 17 MET A 316 ASP A 321 1 6 HELIX 18 18 ARG A 343 LEU A 351 1 9 HELIX 19 19 ALA A 361 LYS A 364 5 4 HELIX 20 20 HIS A 365 LYS A 375 1 11 HELIX 21 21 CYS A 382 LEU A 389 1 8 HELIX 22 22 ASP A 394 HIS A 398 5 5 HELIX 23 23 PRO A 399 THR A 406 1 8 HELIX 24 24 ASP A 416 GLY A 421 5 6 HELIX 25 25 LEU A 425 GLY A 435 1 11 HELIX 26 26 ASP A 442 TYR A 456 1 15 HELIX 27 27 LEU A 460 THR A 484 1 25 HELIX 28 28 SER B 3 ARG B 19 1 17 HELIX 29 29 ASN B 27 LEU B 52 1 26 HELIX 30 30 PHE B 54 MET B 58 5 5 HELIX 31 31 HIS B 59 GLU B 68 1 10 HELIX 32 32 SER B 70 MET B 79 1 10 HELIX 33 33 THR B 94 ASN B 101 1 8 HELIX 34 34 VAL B 102 ARG B 105 5 4 HELIX 35 35 LEU B 139 ARG B 145 1 7 HELIX 36 36 ASN B 148 PHE B 160 1 13 HELIX 37 37 HIS B 166 TYR B 171 1 6 HELIX 38 38 ASN B 173 HIS B 193 1 21 HELIX 39 39 TYR B 194 ASP B 212 1 19 HELIX 40 40 ASP B 235 HIS B 254 1 20 HELIX 41 41 ASP B 271 PHE B 289 1 19 HELIX 42 42 LEU B 308 ASP B 310 5 3 HELIX 43 43 TYR B 311 MET B 316 1 6 HELIX 44 44 MET B 316 ASP B 321 1 6 HELIX 45 45 ARG B 343 LEU B 351 1 9 HELIX 46 46 PHE B 360 LYS B 364 5 5 HELIX 47 47 HIS B 365 LYS B 375 1 11 HELIX 48 48 CYS B 382 LEU B 389 1 8 HELIX 49 49 ASP B 394 HIS B 398 5 5 HELIX 50 50 PRO B 399 THR B 406 1 8 HELIX 51 51 ASP B 416 PHE B 420 5 5 HELIX 52 52 LEU B 425 GLY B 435 1 11 HELIX 53 53 ASP B 442 TYR B 456 1 15 HELIX 54 54 LEU B 460 THR B 484 1 25 SHEET 1 A 4 GLY A 82 HIS A 88 0 SHEET 2 A 4 VAL A 214 ALA A 221 1 O ARG A 220 N LEU A 87 SHEET 3 A 4 GLY A 259 HIS A 267 1 O ILE A 263 N ILE A 219 SHEET 4 A 4 VAL A 293 VAL A 299 1 O ALA A 294 N ILE A 262 SHEET 1 B 3 MET A 118 PHE A 122 0 SHEET 2 B 3 CYS A 108 PHE A 112 -1 N CYS A 111 O GLN A 119 SHEET 3 B 3 ILE A 137 LEU A 138 -1 O ILE A 137 N ILE A 110 SHEET 1 C 4 HIS A 330 ALA A 331 0 SHEET 2 C 4 ILE A 356 HIS A 358 1 O GLY A 357 N ALA A 331 SHEET 3 C 4 ILE A 379 VAL A 381 1 O GLU A 380 N ILE A 356 SHEET 4 C 4 MET A 410 ILE A 412 1 O VAL A 411 N VAL A 381 SHEET 1 D 4 GLY B 82 HIS B 88 0 SHEET 2 D 4 VAL B 214 ALA B 221 1 O ARG B 220 N LEU B 87 SHEET 3 D 4 GLY B 259 HIS B 267 1 O ILE B 263 N ILE B 219 SHEET 4 D 4 VAL B 293 VAL B 299 1 O ALA B 294 N ILE B 262 SHEET 1 E 3 MET B 118 PHE B 122 0 SHEET 2 E 3 CYS B 108 PHE B 112 -1 N HIS B 109 O ARG B 121 SHEET 3 E 3 ILE B 137 LEU B 138 -1 O ILE B 137 N ILE B 110 SHEET 1 F 4 HIS B 330 ALA B 331 0 SHEET 2 F 4 ILE B 356 HIS B 358 1 O GLY B 357 N ALA B 331 SHEET 3 F 4 ILE B 379 VAL B 381 1 O GLU B 380 N ILE B 356 SHEET 4 F 4 MET B 410 ILE B 412 1 O VAL B 411 N VAL B 381 SSBOND 1 CYS A 111 CYS A 133 1555 1555 2.04 SSBOND 2 CYS B 111 CYS B 133 1555 1555 2.04 LINK ND2 ASN A 101 C1 NAG A 550 1555 1555 1.44 LINK ND2 ASN A 159 C1 NAG A 650 1555 1555 1.44 LINK ND2 ASN A 352 C1 NAG A 750 1555 1555 1.45 LINK ND2 ASN B 101 C1 NAG B 550 1555 1555 1.44 LINK ND2 ASN B 159 C1 NAG B 650 1555 1555 1.44 LINK ND2 ASN B 352 C1 NAG B 750 1555 1555 1.45 LINK NE2 HIS A 86 ZN ZN A 850 1555 1555 2.21 LINK NE2 HIS A 88 ZN ZN A 850 1555 1555 2.15 LINK NE2 HIS A 330 ZN ZN A 850 1555 1555 2.26 LINK OD1 ASP A 415 ZN ZN A 850 1555 1555 2.56 LINK NE2 HIS B 86 ZN ZN B 850 1555 1555 2.24 LINK NE2 HIS B 88 ZN ZN B 850 1555 1555 2.19 LINK NE2 HIS B 330 ZN ZN B 850 1555 1555 2.21 LINK OD1 ASP B 415 ZN ZN B 850 1555 1555 2.32 CISPEP 1 HIS A 124 PRO A 125 0 -3.89 CISPEP 2 HIS B 124 PRO B 125 0 1.54 CRYST1 63.212 73.099 80.662 113.38 94.18 92.16 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015820 0.000597 0.001523 0.00000 SCALE2 0.000000 0.013690 0.005990 0.00000 SCALE3 0.000000 0.000000 0.013568 0.00000