data_3LHH # _entry.id 3LHH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LHH RCSB RCSB057283 WWPDB D_1000057283 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC65307.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LHH _pdbx_database_status.recvd_initial_deposition_date 2010-01-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Kagan, O.' 2 'Savchenko, A.' 3 'Edwards, A.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The crystal structure of CBS domain protein from Shewanella oneidensis MR-1.' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Kagan, O.' 2 primary 'Savchenko, A.' 3 primary 'Edwards, A.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 3LHH _cell.length_a 38.605 _cell.length_b 55.257 _cell.length_c 78.822 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LHH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CBS domain protein' 19594.697 1 ? ? ? ? 2 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 3 water nat water 18.015 39 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GHLDDNVTQEDIQA(MSE)LQEGSSAGVIEHNEHA(MSE)VKNVFRLDERTISSL(MSE)VPRSDIVFLDLNLPLDANLR TV(MSE)QSPHSRFPVCRNNVDD(MSE)VGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSG(MSE)ELLEHFRTTG SQ(MSE)VFVVDEYGDLKGLVTLQD(MSE)(MSE)DALTGEFFQEDGS ; _entity_poly.pdbx_seq_one_letter_code_can ;GHLDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPV CRNNVDDMVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMD ALTGEFFQEDGS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier APC65307.2 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 LEU n 1 4 ASP n 1 5 ASP n 1 6 ASN n 1 7 VAL n 1 8 THR n 1 9 GLN n 1 10 GLU n 1 11 ASP n 1 12 ILE n 1 13 GLN n 1 14 ALA n 1 15 MSE n 1 16 LEU n 1 17 GLN n 1 18 GLU n 1 19 GLY n 1 20 SER n 1 21 SER n 1 22 ALA n 1 23 GLY n 1 24 VAL n 1 25 ILE n 1 26 GLU n 1 27 HIS n 1 28 ASN n 1 29 GLU n 1 30 HIS n 1 31 ALA n 1 32 MSE n 1 33 VAL n 1 34 LYS n 1 35 ASN n 1 36 VAL n 1 37 PHE n 1 38 ARG n 1 39 LEU n 1 40 ASP n 1 41 GLU n 1 42 ARG n 1 43 THR n 1 44 ILE n 1 45 SER n 1 46 SER n 1 47 LEU n 1 48 MSE n 1 49 VAL n 1 50 PRO n 1 51 ARG n 1 52 SER n 1 53 ASP n 1 54 ILE n 1 55 VAL n 1 56 PHE n 1 57 LEU n 1 58 ASP n 1 59 LEU n 1 60 ASN n 1 61 LEU n 1 62 PRO n 1 63 LEU n 1 64 ASP n 1 65 ALA n 1 66 ASN n 1 67 LEU n 1 68 ARG n 1 69 THR n 1 70 VAL n 1 71 MSE n 1 72 GLN n 1 73 SER n 1 74 PRO n 1 75 HIS n 1 76 SER n 1 77 ARG n 1 78 PHE n 1 79 PRO n 1 80 VAL n 1 81 CYS n 1 82 ARG n 1 83 ASN n 1 84 ASN n 1 85 VAL n 1 86 ASP n 1 87 ASP n 1 88 MSE n 1 89 VAL n 1 90 GLY n 1 91 ILE n 1 92 ILE n 1 93 SER n 1 94 ALA n 1 95 LYS n 1 96 GLN n 1 97 LEU n 1 98 LEU n 1 99 SER n 1 100 GLU n 1 101 SER n 1 102 ILE n 1 103 ALA n 1 104 GLY n 1 105 GLU n 1 106 ARG n 1 107 LEU n 1 108 GLU n 1 109 LEU n 1 110 VAL n 1 111 ASP n 1 112 LEU n 1 113 VAL n 1 114 LYS n 1 115 ASN n 1 116 CYS n 1 117 ASN n 1 118 PHE n 1 119 VAL n 1 120 PRO n 1 121 ASN n 1 122 SER n 1 123 LEU n 1 124 SER n 1 125 GLY n 1 126 MSE n 1 127 GLU n 1 128 LEU n 1 129 LEU n 1 130 GLU n 1 131 HIS n 1 132 PHE n 1 133 ARG n 1 134 THR n 1 135 THR n 1 136 GLY n 1 137 SER n 1 138 GLN n 1 139 MSE n 1 140 VAL n 1 141 PHE n 1 142 VAL n 1 143 VAL n 1 144 ASP n 1 145 GLU n 1 146 TYR n 1 147 GLY n 1 148 ASP n 1 149 LEU n 1 150 LYS n 1 151 GLY n 1 152 LEU n 1 153 VAL n 1 154 THR n 1 155 LEU n 1 156 GLN n 1 157 ASP n 1 158 MSE n 1 159 MSE n 1 160 ASP n 1 161 ALA n 1 162 LEU n 1 163 THR n 1 164 GLY n 1 165 GLU n 1 166 PHE n 1 167 PHE n 1 168 GLN n 1 169 GLU n 1 170 ASP n 1 171 GLY n 1 172 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SO_2815 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MR-1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shewanella oneidensis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 211586 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'p15Tv lic' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8EDE1_SHEON _struct_ref.pdbx_db_accession Q8EDE1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCR NNVDDMVGIISAKQLLSESIAGERLELVDLVKNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDAL TGEFFQED ; _struct_ref.pdbx_align_begin 170 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LHH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8EDE1 _struct_ref_seq.db_align_beg 170 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 337 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 168 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LHH GLY A 1 ? UNP Q8EDE1 ? ? 'expression tag' -1 1 1 3LHH HIS A 2 ? UNP Q8EDE1 ? ? 'expression tag' 0 2 1 3LHH GLY A 171 ? UNP Q8EDE1 ? ? 'expression tag' 169 3 1 3LHH SER A 172 ? UNP Q8EDE1 ? ? 'expression tag' 170 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3LHH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_percent_sol 42.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details ;0.1M Tri-Na-Citrate, 2% MPD, 25% PEG3350, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-12-02 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97937 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97937 # _reflns.entry_id 3LHH _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 27.6 _reflns.d_resolution_high 2.10 _reflns.number_obs 10353 _reflns.number_all 10353 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.101 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 28.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.14 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.797 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.52 _reflns_shell.pdbx_redundancy 7.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 508 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LHH _refine.ls_number_reflns_obs 9492 _refine.ls_number_reflns_all 9492 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.08 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.578 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 91.67 _refine.ls_R_factor_obs 0.2031 _refine.ls_R_factor_all 0.2031 _refine.ls_R_factor_R_work 0.2000 _refine.ls_R_factor_R_free 0.2653 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.85 _refine.ls_number_reflns_R_free 460 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.332 _refine.solvent_model_param_bsol 40.805 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.26 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1014 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 39 _refine_hist.number_atoms_total 1076 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 27.578 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 1060 'X-RAY DIFFRACTION' ? f_angle_d 1.174 ? ? 1448 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.420 ? ? 413 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 172 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 186 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.0986 2.4021 2652 0.2504 83.00 0.3155 . . 156 . . . . 'X-RAY DIFFRACTION' . 2.4021 3.0258 3013 0.2131 93.00 0.3002 . . 151 . . . . 'X-RAY DIFFRACTION' . 3.0258 27.5808 3367 0.1862 99.00 0.2415 . . 153 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3LHH _struct.title 'The crystal structure of CBS domain protein from Shewanella oneidensis MR-1.' _struct.pdbx_descriptor 'CBS domain protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LHH _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, Cell membrane, Transmembrane, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. The chain A is likely a monomer.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 52 ? ILE A 54 ? SER A 50 ILE A 52 5 ? 3 HELX_P HELX_P2 2 PRO A 62 ? GLN A 72 ? PRO A 60 GLN A 70 1 ? 11 HELX_P HELX_P3 3 ALA A 94 ? ALA A 103 ? ALA A 92 ALA A 101 1 ? 10 HELX_P HELX_P4 4 GLU A 108 ? VAL A 113 ? GLU A 106 VAL A 111 5 ? 6 HELX_P HELX_P5 5 SER A 124 ? GLY A 136 ? SER A 122 GLY A 134 1 ? 13 HELX_P HELX_P6 6 LEU A 155 ? GLY A 164 ? LEU A 153 GLY A 162 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A LEU 47 C ? ? ? 1_555 A MSE 48 N ? ? A LEU 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A MSE 48 C ? ? ? 1_555 A VAL 49 N ? ? A MSE 46 A VAL 47 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A VAL 70 C ? ? ? 1_555 A MSE 71 N ? ? A VAL 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? A MSE 71 C ? ? ? 1_555 A GLN 72 N ? ? A MSE 69 A GLN 70 1_555 ? ? ? ? ? ? ? 1.325 ? covale5 covale ? ? A ASP 87 C ? ? ? 1_555 A MSE 88 N ? ? A ASP 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 88 C ? ? ? 1_555 A VAL 89 N ? ? A MSE 86 A VAL 87 1_555 ? ? ? ? ? ? ? 1.321 ? covale7 covale ? ? A GLY 125 C ? ? ? 1_555 A MSE 126 N ? ? A GLY 123 A MSE 124 1_555 ? ? ? ? ? ? ? 1.329 ? covale8 covale ? ? A MSE 126 C ? ? ? 1_555 A GLU 127 N ? ? A MSE 124 A GLU 125 1_555 ? ? ? ? ? ? ? 1.327 ? covale9 covale ? ? A GLN 138 C ? ? ? 1_555 A MSE 139 N ? ? A GLN 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.332 ? covale10 covale ? ? A MSE 139 C ? ? ? 1_555 A VAL 140 N ? ? A MSE 137 A VAL 138 1_555 ? ? ? ? ? ? ? 1.331 ? covale11 covale ? ? A ASP 157 C ? ? ? 1_555 A MSE 158 N ? ? A ASP 155 A MSE 156 1_555 ? ? ? ? ? ? ? 1.325 ? covale12 covale ? ? A MSE 158 C ? ? ? 1_555 A MSE 159 N ? ? A MSE 156 A MSE 157 1_555 ? ? ? ? ? ? ? 1.329 ? covale13 covale ? ? A MSE 159 C ? ? ? 1_555 A ASP 160 N ? ? A MSE 157 A ASP 158 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel B 1 2 ? parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 49 ? PRO A 50 ? VAL A 47 PRO A 48 A 2 LEU A 149 ? THR A 154 ? LEU A 147 THR A 152 A 3 MSE A 139 ? VAL A 143 ? MSE A 137 VAL A 141 A 4 ASN A 117 ? PRO A 120 ? ASN A 115 PRO A 118 B 1 LEU A 57 ? ASP A 58 ? LEU A 55 ASP A 56 B 2 ARG A 77 ? CYS A 81 ? ARG A 75 CYS A 79 B 3 MSE A 88 ? SER A 93 ? MSE A 86 SER A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 49 ? N VAL A 47 O LEU A 152 ? O LEU A 150 A 2 3 O LYS A 150 ? O LYS A 148 N VAL A 142 ? N VAL A 140 A 3 4 O PHE A 141 ? O PHE A 139 N ASN A 117 ? N ASN A 115 B 1 2 N LEU A 57 ? N LEU A 55 O CYS A 81 ? O CYS A 79 B 2 3 N VAL A 80 ? N VAL A 78 O GLY A 90 ? O GLY A 88 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 13 _struct_site.details 'BINDING SITE FOR RESIDUE AMP A 171' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ASP A 53 ? ASP A 51 . ? 1_555 ? 2 AC1 13 VAL A 55 ? VAL A 53 . ? 1_555 ? 3 AC1 13 HIS A 75 ? HIS A 73 . ? 1_555 ? 4 AC1 13 SER A 76 ? SER A 74 . ? 1_555 ? 5 AC1 13 ARG A 77 ? ARG A 75 . ? 1_555 ? 6 AC1 13 PRO A 79 ? PRO A 77 . ? 1_555 ? 7 AC1 13 MSE A 139 ? MSE A 137 . ? 1_555 ? 8 AC1 13 THR A 154 ? THR A 152 . ? 1_555 ? 9 AC1 13 GLN A 156 ? GLN A 154 . ? 1_555 ? 10 AC1 13 ASP A 157 ? ASP A 155 . ? 1_555 ? 11 AC1 13 HOH C . ? HOH A 185 . ? 1_555 ? 12 AC1 13 HOH C . ? HOH A 192 . ? 1_555 ? 13 AC1 13 HOH C . ? HOH A 194 . ? 1_555 ? # _database_PDB_matrix.entry_id 3LHH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3LHH _atom_sites.fract_transf_matrix[1][1] 0.025903 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018097 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012687 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 HIS 2 0 ? ? ? A . n A 1 3 LEU 3 1 ? ? ? A . n A 1 4 ASP 4 2 ? ? ? A . n A 1 5 ASP 5 3 ? ? ? A . n A 1 6 ASN 6 4 ? ? ? A . n A 1 7 VAL 7 5 ? ? ? A . n A 1 8 THR 8 6 ? ? ? A . n A 1 9 GLN 9 7 ? ? ? A . n A 1 10 GLU 10 8 ? ? ? A . n A 1 11 ASP 11 9 ? ? ? A . n A 1 12 ILE 12 10 ? ? ? A . n A 1 13 GLN 13 11 ? ? ? A . n A 1 14 ALA 14 12 ? ? ? A . n A 1 15 MSE 15 13 ? ? ? A . n A 1 16 LEU 16 14 ? ? ? A . n A 1 17 GLN 17 15 ? ? ? A . n A 1 18 GLU 18 16 ? ? ? A . n A 1 19 GLY 19 17 ? ? ? A . n A 1 20 SER 20 18 ? ? ? A . n A 1 21 SER 21 19 ? ? ? A . n A 1 22 ALA 22 20 ? ? ? A . n A 1 23 GLY 23 21 ? ? ? A . n A 1 24 VAL 24 22 ? ? ? A . n A 1 25 ILE 25 23 ? ? ? A . n A 1 26 GLU 26 24 ? ? ? A . n A 1 27 HIS 27 25 ? ? ? A . n A 1 28 ASN 28 26 ? ? ? A . n A 1 29 GLU 29 27 ? ? ? A . n A 1 30 HIS 30 28 ? ? ? A . n A 1 31 ALA 31 29 ? ? ? A . n A 1 32 MSE 32 30 ? ? ? A . n A 1 33 VAL 33 31 ? ? ? A . n A 1 34 LYS 34 32 ? ? ? A . n A 1 35 ASN 35 33 ? ? ? A . n A 1 36 VAL 36 34 ? ? ? A . n A 1 37 PHE 37 35 ? ? ? A . n A 1 38 ARG 38 36 ? ? ? A . n A 1 39 LEU 39 37 ? ? ? A . n A 1 40 ASP 40 38 ? ? ? A . n A 1 41 GLU 41 39 ? ? ? A . n A 1 42 ARG 42 40 ? ? ? A . n A 1 43 THR 43 41 41 THR THR A . n A 1 44 ILE 44 42 42 ILE ILE A . n A 1 45 SER 45 43 43 SER SER A . n A 1 46 SER 46 44 44 SER SER A . n A 1 47 LEU 47 45 45 LEU LEU A . n A 1 48 MSE 48 46 46 MSE MSE A . n A 1 49 VAL 49 47 47 VAL VAL A . n A 1 50 PRO 50 48 48 PRO PRO A . n A 1 51 ARG 51 49 49 ARG ARG A . n A 1 52 SER 52 50 50 SER SER A . n A 1 53 ASP 53 51 51 ASP ASP A . n A 1 54 ILE 54 52 52 ILE ILE A . n A 1 55 VAL 55 53 53 VAL VAL A . n A 1 56 PHE 56 54 54 PHE PHE A . n A 1 57 LEU 57 55 55 LEU LEU A . n A 1 58 ASP 58 56 56 ASP ASP A . n A 1 59 LEU 59 57 57 LEU LEU A . n A 1 60 ASN 60 58 58 ASN ASN A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 PRO 62 60 60 PRO PRO A . n A 1 63 LEU 63 61 61 LEU LEU A . n A 1 64 ASP 64 62 62 ASP ASP A . n A 1 65 ALA 65 63 63 ALA ALA A . n A 1 66 ASN 66 64 64 ASN ASN A . n A 1 67 LEU 67 65 65 LEU LEU A . n A 1 68 ARG 68 66 66 ARG ARG A . n A 1 69 THR 69 67 67 THR THR A . n A 1 70 VAL 70 68 68 VAL VAL A . n A 1 71 MSE 71 69 69 MSE MSE A . n A 1 72 GLN 72 70 70 GLN GLN A . n A 1 73 SER 73 71 71 SER SER A . n A 1 74 PRO 74 72 72 PRO PRO A . n A 1 75 HIS 75 73 73 HIS HIS A . n A 1 76 SER 76 74 74 SER SER A . n A 1 77 ARG 77 75 75 ARG ARG A . n A 1 78 PHE 78 76 76 PHE PHE A . n A 1 79 PRO 79 77 77 PRO PRO A . n A 1 80 VAL 80 78 78 VAL VAL A . n A 1 81 CYS 81 79 79 CYS CYS A . n A 1 82 ARG 82 80 80 ARG ARG A . n A 1 83 ASN 83 81 81 ASN ASN A . n A 1 84 ASN 84 82 82 ASN ASN A . n A 1 85 VAL 85 83 83 VAL VAL A . n A 1 86 ASP 86 84 84 ASP ASP A . n A 1 87 ASP 87 85 85 ASP ASP A . n A 1 88 MSE 88 86 86 MSE MSE A . n A 1 89 VAL 89 87 87 VAL VAL A . n A 1 90 GLY 90 88 88 GLY GLY A . n A 1 91 ILE 91 89 89 ILE ILE A . n A 1 92 ILE 92 90 90 ILE ILE A . n A 1 93 SER 93 91 91 SER SER A . n A 1 94 ALA 94 92 92 ALA ALA A . n A 1 95 LYS 95 93 93 LYS LYS A . n A 1 96 GLN 96 94 94 GLN GLN A . n A 1 97 LEU 97 95 95 LEU LEU A . n A 1 98 LEU 98 96 96 LEU LEU A . n A 1 99 SER 99 97 97 SER SER A . n A 1 100 GLU 100 98 98 GLU GLU A . n A 1 101 SER 101 99 99 SER SER A . n A 1 102 ILE 102 100 100 ILE ILE A . n A 1 103 ALA 103 101 101 ALA ALA A . n A 1 104 GLY 104 102 102 GLY GLY A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 ARG 106 104 104 ARG ARG A . n A 1 107 LEU 107 105 105 LEU LEU A . n A 1 108 GLU 108 106 106 GLU GLU A . n A 1 109 LEU 109 107 107 LEU LEU A . n A 1 110 VAL 110 108 108 VAL VAL A . n A 1 111 ASP 111 109 109 ASP ASP A . n A 1 112 LEU 112 110 110 LEU LEU A . n A 1 113 VAL 113 111 111 VAL VAL A . n A 1 114 LYS 114 112 112 LYS LYS A . n A 1 115 ASN 115 113 113 ASN ASN A . n A 1 116 CYS 116 114 114 CYS CYS A . n A 1 117 ASN 117 115 115 ASN ASN A . n A 1 118 PHE 118 116 116 PHE PHE A . n A 1 119 VAL 119 117 117 VAL VAL A . n A 1 120 PRO 120 118 118 PRO PRO A . n A 1 121 ASN 121 119 119 ASN ASN A . n A 1 122 SER 122 120 120 SER SER A . n A 1 123 LEU 123 121 121 LEU LEU A . n A 1 124 SER 124 122 122 SER SER A . n A 1 125 GLY 125 123 123 GLY GLY A . n A 1 126 MSE 126 124 124 MSE MSE A . n A 1 127 GLU 127 125 125 GLU GLU A . n A 1 128 LEU 128 126 126 LEU LEU A . n A 1 129 LEU 129 127 127 LEU LEU A . n A 1 130 GLU 130 128 128 GLU GLU A . n A 1 131 HIS 131 129 129 HIS HIS A . n A 1 132 PHE 132 130 130 PHE PHE A . n A 1 133 ARG 133 131 131 ARG ARG A . n A 1 134 THR 134 132 132 THR THR A . n A 1 135 THR 135 133 133 THR THR A . n A 1 136 GLY 136 134 134 GLY GLY A . n A 1 137 SER 137 135 135 SER SER A . n A 1 138 GLN 138 136 136 GLN GLN A . n A 1 139 MSE 139 137 137 MSE MSE A . n A 1 140 VAL 140 138 138 VAL VAL A . n A 1 141 PHE 141 139 139 PHE PHE A . n A 1 142 VAL 142 140 140 VAL VAL A . n A 1 143 VAL 143 141 141 VAL VAL A . n A 1 144 ASP 144 142 142 ASP ASP A . n A 1 145 GLU 145 143 143 GLU GLU A . n A 1 146 TYR 146 144 144 TYR TYR A . n A 1 147 GLY 147 145 145 GLY GLY A . n A 1 148 ASP 148 146 146 ASP ASP A . n A 1 149 LEU 149 147 147 LEU LEU A . n A 1 150 LYS 150 148 148 LYS LYS A . n A 1 151 GLY 151 149 149 GLY GLY A . n A 1 152 LEU 152 150 150 LEU LEU A . n A 1 153 VAL 153 151 151 VAL VAL A . n A 1 154 THR 154 152 152 THR THR A . n A 1 155 LEU 155 153 153 LEU LEU A . n A 1 156 GLN 156 154 154 GLN GLN A . n A 1 157 ASP 157 155 155 ASP ASP A . n A 1 158 MSE 158 156 156 MSE MSE A . n A 1 159 MSE 159 157 157 MSE MSE A . n A 1 160 ASP 160 158 158 ASP ASP A . n A 1 161 ALA 161 159 159 ALA ALA A . n A 1 162 LEU 162 160 160 LEU LEU A . n A 1 163 THR 163 161 161 THR THR A . n A 1 164 GLY 164 162 162 GLY GLY A . n A 1 165 GLU 165 163 163 GLU GLU A . n A 1 166 PHE 166 164 164 PHE PHE A . n A 1 167 PHE 167 165 165 PHE PHE A . n A 1 168 GLN 168 166 ? ? ? A . n A 1 169 GLU 169 167 ? ? ? A . n A 1 170 ASP 170 168 ? ? ? A . n A 1 171 GLY 171 169 ? ? ? A . n A 1 172 SER 172 170 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 48 A MSE 46 ? MET SELENOMETHIONINE 2 A MSE 71 A MSE 69 ? MET SELENOMETHIONINE 3 A MSE 88 A MSE 86 ? MET SELENOMETHIONINE 4 A MSE 126 A MSE 124 ? MET SELENOMETHIONINE 5 A MSE 139 A MSE 137 ? MET SELENOMETHIONINE 6 A MSE 158 A MSE 156 ? MET SELENOMETHIONINE 7 A MSE 159 A MSE 157 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-02 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.3278 16.5155 49.3386 0.5033 0.2917 0.3047 -0.0512 0.0221 -0.0175 0.1629 2.3074 2.0604 0.3741 0.5776 1.0298 -0.0764 0.0645 0.1270 -0.4374 0.1172 -0.0815 -0.4913 0.2630 -0.0264 'X-RAY DIFFRACTION' 2 ? ? ? ? ? 0.2378 0.2458 0.2197 0.0607 -0.0209 -0.0167 2.1034 0.9057 1.6641 0.2512 0.7260 0.5845 0.0567 0.1116 0.1120 0.0062 -0.1612 0.0326 -0.1212 -0.2522 0.0681 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details 'chain A resid 53:113' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP 'model building' . ? 5 WARP 'model building' . ? 6 HKL-3000 phasing . ? 7 PHENIX refinement '(phenix.refine: 1.5_2)' ? 8 HKL-3000 'data reduction' . ? 9 HKL-3000 'data scaling' . ? 10 DM phasing . ? 11 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 81 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 68.41 _pdbx_validate_torsion.psi -51.51 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A HIS 0 ? A HIS 2 3 1 Y 1 A LEU 1 ? A LEU 3 4 1 Y 1 A ASP 2 ? A ASP 4 5 1 Y 1 A ASP 3 ? A ASP 5 6 1 Y 1 A ASN 4 ? A ASN 6 7 1 Y 1 A VAL 5 ? A VAL 7 8 1 Y 1 A THR 6 ? A THR 8 9 1 Y 1 A GLN 7 ? A GLN 9 10 1 Y 1 A GLU 8 ? A GLU 10 11 1 Y 1 A ASP 9 ? A ASP 11 12 1 Y 1 A ILE 10 ? A ILE 12 13 1 Y 1 A GLN 11 ? A GLN 13 14 1 Y 1 A ALA 12 ? A ALA 14 15 1 Y 1 A MSE 13 ? A MSE 15 16 1 Y 1 A LEU 14 ? A LEU 16 17 1 Y 1 A GLN 15 ? A GLN 17 18 1 Y 1 A GLU 16 ? A GLU 18 19 1 Y 1 A GLY 17 ? A GLY 19 20 1 Y 1 A SER 18 ? A SER 20 21 1 Y 1 A SER 19 ? A SER 21 22 1 Y 1 A ALA 20 ? A ALA 22 23 1 Y 1 A GLY 21 ? A GLY 23 24 1 Y 1 A VAL 22 ? A VAL 24 25 1 Y 1 A ILE 23 ? A ILE 25 26 1 Y 1 A GLU 24 ? A GLU 26 27 1 Y 1 A HIS 25 ? A HIS 27 28 1 Y 1 A ASN 26 ? A ASN 28 29 1 Y 1 A GLU 27 ? A GLU 29 30 1 Y 1 A HIS 28 ? A HIS 30 31 1 Y 1 A ALA 29 ? A ALA 31 32 1 Y 1 A MSE 30 ? A MSE 32 33 1 Y 1 A VAL 31 ? A VAL 33 34 1 Y 1 A LYS 32 ? A LYS 34 35 1 Y 1 A ASN 33 ? A ASN 35 36 1 Y 1 A VAL 34 ? A VAL 36 37 1 Y 1 A PHE 35 ? A PHE 37 38 1 Y 1 A ARG 36 ? A ARG 38 39 1 Y 1 A LEU 37 ? A LEU 39 40 1 Y 1 A ASP 38 ? A ASP 40 41 1 Y 1 A GLU 39 ? A GLU 41 42 1 Y 1 A ARG 40 ? A ARG 42 43 1 Y 1 A GLN 166 ? A GLN 168 44 1 Y 1 A GLU 167 ? A GLU 169 45 1 Y 1 A ASP 168 ? A ASP 170 46 1 Y 1 A GLY 169 ? A GLY 171 47 1 Y 1 A SER 170 ? A SER 172 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ADENOSINE MONOPHOSPHATE' AMP 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP 1 171 1 AMP AMP A . C 3 HOH 1 172 1 HOH HOH A . C 3 HOH 2 173 2 HOH HOH A . C 3 HOH 3 174 3 HOH HOH A . C 3 HOH 4 175 4 HOH HOH A . C 3 HOH 5 176 5 HOH HOH A . C 3 HOH 6 177 6 HOH HOH A . C 3 HOH 7 178 7 HOH HOH A . C 3 HOH 8 179 8 HOH HOH A . C 3 HOH 9 180 9 HOH HOH A . C 3 HOH 10 181 10 HOH HOH A . C 3 HOH 11 182 11 HOH HOH A . C 3 HOH 12 183 12 HOH HOH A . C 3 HOH 13 184 13 HOH HOH A . C 3 HOH 14 185 14 HOH HOH A . C 3 HOH 15 186 15 HOH HOH A . C 3 HOH 16 187 16 HOH HOH A . C 3 HOH 17 188 17 HOH HOH A . C 3 HOH 18 189 18 HOH HOH A . C 3 HOH 19 190 19 HOH HOH A . C 3 HOH 20 191 20 HOH HOH A . C 3 HOH 21 192 21 HOH HOH A . C 3 HOH 22 193 22 HOH HOH A . C 3 HOH 23 194 23 HOH HOH A . C 3 HOH 24 195 24 HOH HOH A . C 3 HOH 25 196 25 HOH HOH A . C 3 HOH 26 197 26 HOH HOH A . C 3 HOH 27 198 27 HOH HOH A . C 3 HOH 28 199 28 HOH HOH A . C 3 HOH 29 200 29 HOH HOH A . C 3 HOH 30 201 30 HOH HOH A . C 3 HOH 31 202 31 HOH HOH A . C 3 HOH 32 203 32 HOH HOH A . C 3 HOH 33 204 33 HOH HOH A . C 3 HOH 34 205 34 HOH HOH A . C 3 HOH 35 206 35 HOH HOH A . C 3 HOH 36 207 36 HOH HOH A . C 3 HOH 37 208 37 HOH HOH A . C 3 HOH 38 209 38 HOH HOH A . C 3 HOH 39 210 39 HOH HOH A . #