HEADER HYDROLASE 22-JAN-10 3LHL TITLE CRYSTAL STRUCTURE OF A PUTATIVE AGMATINASE FROM CLOSTRIDIUM DIFFICILE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE AGMATINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 17-292; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM DIFFICILE; SOURCE 3 ORGANISM_TAXID: 272563; SOURCE 4 STRAIN: 630; SOURCE 5 GENE: CD0891, SPEB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC - PSGX3 (BC) KEYWDS AGMATINASE, PROTEIN STRUCTURE INITIATIVE II(PSI II), NYSGXRC, 11305E, KEYWDS 2 STRUCTURAL GENOMICS, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MANGANESE, METAL-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.PALANI,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3LHL 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 16-NOV-11 3LHL 1 VERSN HETATM REVDAT 1 23-FEB-10 3LHL 0 JRNL AUTH K.PALANI,S.K.BURLEY,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE AGMATINASE FROM CLOSTRIDIUM JRNL TITL 2 DIFFICILE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 119736.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 13323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 656 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2035 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 112 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.54000 REMARK 3 B22 (A**2) : -2.54000 REMARK 3 B33 (A**2) : 5.08000 REMARK 3 B12 (A**2) : 0.61000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.25 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 42.28 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : MPD.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : MPD.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI(III) CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13323 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 37.90 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 37.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.1M TRIS, 50% MPD, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.05900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.05900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.05900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.05900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 83.05900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 83.05900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 77.35000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 38.67500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 66.98706 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MN MN A 304 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 GLU A 293 REMARK 465 GLY A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 264 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 29.65 -143.92 REMARK 500 SER A 35 -63.76 -93.53 REMARK 500 TYR A 125 77.74 -102.25 REMARK 500 ARG A 172 10.99 -147.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 ND1 REMARK 620 2 ASP A 134 OD2 92.2 REMARK 620 3 ASP A 138 OD2 84.3 83.6 REMARK 620 4 ASP A 215 OD2 104.3 86.8 167.4 REMARK 620 5 MN A 303 MN 129.2 138.5 100.1 81.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 134 OD1 REMARK 620 2 HIS A 136 ND1 90.6 REMARK 620 3 ASP A 215 OD2 87.9 173.2 REMARK 620 4 ASP A 217 OD2 127.5 88.7 97.4 REMARK 620 5 ASP A 217 OD1 75.4 93.1 92.9 52.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11305E RELATED DB: TARGETDB DBREF 3LHL A 17 292 UNP Q18A84 Q18A84_CLOD6 17 292 SEQADV 3LHL MSE A 14 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL SER A 15 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL LEU A 16 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL GLU A 293 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL GLY A 294 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 295 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 296 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 297 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 298 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 299 UNP Q18A84 EXPRESSION TAG SEQADV 3LHL HIS A 300 UNP Q18A84 EXPRESSION TAG SEQRES 1 A 287 MSE SER LEU ASN TYR GLU GLU SER ASN LEU ILE VAL PHE SEQRES 2 A 287 GLY VAL GLY PHE ASP GLY THR THR SER ASN ARG PRO GLY SEQRES 3 A 287 ALA ARG PHE ALA SER SER SER MSE ARG LYS GLU PHE TYR SEQRES 4 A 287 GLY LEU GLU THR TYR SER PRO PHE LEU ASP LEU ASP LEU SEQRES 5 A 287 GLU ASP TYR ASN ILE CYS ASP TYR GLY ASP LEU GLU ILE SEQRES 6 A 287 SER VAL GLY SER THR GLU GLN VAL LEU LYS GLU ILE TYR SEQRES 7 A 287 GLN GLU THR TYR LYS ILE VAL ARG ASP SER LYS VAL PRO SEQRES 8 A 287 PHE MSE ILE GLY GLY GLU HIS LEU VAL THR LEU PRO ALA SEQRES 9 A 287 PHE LYS ALA VAL HIS GLU LYS TYR ASN ASP ILE TYR VAL SEQRES 10 A 287 ILE HIS PHE ASP ALA HIS THR ASP LEU ARG GLU GLU TYR SEQRES 11 A 287 ASN ASN SER LYS ASN SER HIS ALA THR VAL ILE LYS ARG SEQRES 12 A 287 ILE TRP ASP ILE VAL GLY ASP ASN LYS ILE PHE GLN PHE SEQRES 13 A 287 GLY ILE ARG SER GLY THR LYS GLU GLU PHE LYS PHE ALA SEQRES 14 A 287 THR GLU GLU LYS HIS THR TYR MSE GLU ILE GLY GLY ILE SEQRES 15 A 287 ASP THR PHE GLU ASN ILE VAL ASN MSE LEU ASN GLY LYS SEQRES 16 A 287 ASN ILE TYR LEU THR ILE ASP LEU ASP VAL LEU ASP ALA SEQRES 17 A 287 SER VAL PHE PRO GLY THR GLY THR PRO GLU PRO GLY GLY SEQRES 18 A 287 VAL ASN TYR ARG GLU PHE GLN GLU ILE PHE LYS ILE ILE SEQRES 19 A 287 LYS ASN SER ASN ILE ASN ILE VAL GLY CYS ASP ILE VAL SEQRES 20 A 287 GLU LEU SER PRO ASP TYR ASP THR THR GLY VAL SER THR SEQRES 21 A 287 VAL ILE ALA CYS LYS ILE LEU ARG GLU LEU CYS LEU ILE SEQRES 22 A 287 ILE SER ASP LYS ILE LYS GLU GLY HIS HIS HIS HIS HIS SEQRES 23 A 287 HIS MODRES 3LHL MSE A 47 MET SELENOMETHIONINE MODRES 3LHL MSE A 106 MET SELENOMETHIONINE MODRES 3LHL MSE A 190 MET SELENOMETHIONINE MODRES 3LHL MSE A 204 MET SELENOMETHIONINE HET MSE A 47 8 HET MSE A 106 8 HET MSE A 190 8 HET MSE A 204 8 HET MN A 301 1 HET MN A 302 1 HET MN A 303 1 HET MN A 304 1 HET PO4 A 305 5 HET PO4 A 306 5 HET MPD A 307 8 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM PO4 PHOSPHATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 MN 4(MN 2+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 8 MPD C6 H14 O2 FORMUL 9 HOH *166(H2 O) HELIX 1 1 GLY A 39 ARG A 41 5 3 HELIX 2 2 PHE A 42 TYR A 52 1 11 HELIX 3 3 GLU A 66 TYR A 68 5 3 HELIX 4 4 SER A 82 ASP A 100 1 19 HELIX 5 5 GLU A 110 LEU A 112 5 3 HELIX 6 6 VAL A 113 TYR A 125 1 13 HELIX 7 7 THR A 152 GLY A 162 1 11 HELIX 8 8 THR A 175 GLU A 184 1 10 HELIX 9 9 THR A 197 LEU A 205 1 9 HELIX 10 10 ASP A 217 LEU A 219 5 3 HELIX 11 11 ASN A 236 GLN A 241 1 6 HELIX 12 12 GLN A 241 ASN A 249 1 9 HELIX 13 13 SER A 263 ASP A 267 5 5 HELIX 14 14 GLY A 270 LYS A 292 1 23 SHEET 1 A 8 ILE A 70 ASP A 75 0 SHEET 2 A 8 LEU A 23 VAL A 28 1 N VAL A 25 O CYS A 71 SHEET 3 A 8 VAL A 103 GLY A 108 1 O PHE A 105 N ILE A 24 SHEET 4 A 8 ASN A 253 VAL A 260 1 O CYS A 257 N MSE A 106 SHEET 5 A 8 ASN A 209 ASP A 215 1 N ILE A 210 O ASN A 253 SHEET 6 A 8 ILE A 128 PHE A 133 1 N TYR A 129 O ASN A 209 SHEET 7 A 8 ILE A 166 ILE A 171 1 O PHE A 167 N HIS A 132 SHEET 8 A 8 TYR A 189 ILE A 192 1 O TYR A 189 N GLN A 168 SHEET 1 B 2 TYR A 57 SER A 58 0 SHEET 2 B 2 LEU A 63 ASP A 64 -1 O LEU A 63 N SER A 58 LINK C SER A 46 N MSE A 47 1555 1555 1.33 LINK C MSE A 47 N ARG A 48 1555 1555 1.33 LINK C PHE A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N ILE A 107 1555 1555 1.33 LINK C TYR A 189 N MSE A 190 1555 1555 1.33 LINK C MSE A 190 N GLU A 191 1555 1555 1.33 LINK C ASN A 203 N MSE A 204 1555 1555 1.33 LINK C MSE A 204 N LEU A 205 1555 1555 1.33 LINK ND1 HIS A 111 MN MN A 301 1555 1555 2.22 LINK OD2 ASP A 134 MN MN A 301 1555 1555 2.17 LINK OD1 ASP A 134 MN MN A 302 1555 1555 2.31 LINK ND1 HIS A 136 MN MN A 302 1555 1555 2.43 LINK OD2 ASP A 138 MN MN A 301 1555 1555 2.35 LINK OD2 ASP A 215 MN MN A 301 1555 1555 2.22 LINK OD2 ASP A 215 MN MN A 302 1555 1555 2.37 LINK OD2 ASP A 217 MN MN A 302 1555 1555 2.04 LINK OD1 ASP A 217 MN MN A 302 1555 1555 2.73 LINK MN MN A 301 MN MN A 303 1555 1555 2.86 SITE 1 AC1 6 HIS A 111 ASP A 134 ASP A 138 ASP A 215 SITE 2 AC1 6 MN A 302 MN A 303 SITE 1 AC2 6 ASP A 134 HIS A 136 ASP A 215 ASP A 217 SITE 2 AC2 6 MN A 301 MN A 303 SITE 1 AC3 6 ASP A 138 HIS A 150 ASP A 215 GLU A 261 SITE 2 AC3 6 MN A 301 MN A 302 SITE 1 AC4 1 ASN A 236 SITE 1 AC5 7 THR A 34 SER A 35 ASN A 36 ARG A 37 SITE 2 AC5 7 TYR A 143 HIS A 150 HOH A 323 SITE 1 AC6 7 ARG A 99 TYR A 143 ASN A 144 ASN A 145 SITE 2 AC6 7 HOH A 364 HOH A 419 HOH A 431 SITE 1 AC7 6 HOH A 6 PHE A 26 GLY A 27 SER A 44 SITE 2 AC7 6 ARG A 48 ASP A 72 CRYST1 77.350 77.350 166.118 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012928 0.007464 0.000000 0.00000 SCALE2 0.000000 0.014928 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006020 0.00000