HEADER LIPID BINDING PROTEIN 22-JAN-10 3LHN TITLE CRYSTAL STRUCTURE OF PUTATIVE LIPOPROTEIN (NP_718719.1) FROM TITLE 2 SHEWANELLA ONEIDENSIS AT 1.42 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 26-150; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 70863; SOURCE 4 GENE: SO_3163; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDETS KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LHN 1 REMARK SEQADV REVDAT 4 17-JUL-19 3LHN 1 REMARK LINK REVDAT 3 25-OCT-17 3LHN 1 REMARK REVDAT 2 13-JUL-11 3LHN 1 VERSN REVDAT 1 23-FEB-10 3LHN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE LIPOPROTEIN (NP_718719.1) FROM JRNL TITL 2 SHEWANELLA ONEIDENSIS AT 1.42 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 43647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2191 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2950 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1622 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 16.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82000 REMARK 3 B22 (A**2) : 0.82000 REMARK 3 B33 (A**2) : -1.23000 REMARK 3 B12 (A**2) : 0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1928 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1295 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2620 ; 1.772 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3202 ; 0.910 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;28.708 ;26.753 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 351 ;11.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;12.091 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2239 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 355 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1218 ; 1.195 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 509 ; 0.303 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1967 ; 2.027 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 710 ; 1.881 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 653 ; 3.036 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): 32.0832 7.6596 14.7783 REMARK 3 T TENSOR REMARK 3 T11: 0.0441 T22: 0.0824 REMARK 3 T33: 0.0404 T12: -0.0116 REMARK 3 T13: 0.0027 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 0.6454 L22: 0.2618 REMARK 3 L33: 1.0076 L12: 0.0363 REMARK 3 L13: 0.3905 L23: -0.2672 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0402 S13: 0.0278 REMARK 3 S21: 0.0123 S22: 0.0413 S23: -0.0430 REMARK 3 S31: -0.0766 S32: 0.1048 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 44 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 48.2855 15.9082 37.0162 REMARK 3 T TENSOR REMARK 3 T11: 0.0085 T22: 0.0376 REMARK 3 T33: 0.0290 T12: 0.0043 REMARK 3 T13: -0.0138 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.6816 L22: 0.4773 REMARK 3 L33: 1.6501 L12: 0.3125 REMARK 3 L13: 0.3135 L23: 0.5569 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.0452 S13: -0.0193 REMARK 3 S21: -0.0603 S22: -0.0255 S23: 0.0826 REMARK 3 S31: -0.0561 S32: -0.1258 S33: 0.0501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS REMARK 3 ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.A REMARK 3 SULFATE ION(SO4) FROM CRYSTALLIZATION AND GLYCEROL MOLECULES(GOL) REMARK 3 FROM CRYOPROTECTANT ARE MODELED IN THE STRUCTURE. REMARK 4 REMARK 4 3LHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057288. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97932,0.97882 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43813 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 28.421 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M AMMONIUM SULFATE, 0.1M CITRIC REMARK 280 ACID PH 5.0, 0.001 M COPPER (II) CHLORIDE, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.16933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 200.33867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.25400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 250.42333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.08467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 100.16933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 200.33867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 250.42333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 150.25400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.08467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUGGESTS A DIMER REMARK 300 AS A SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION. CRYSTAL PACKING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS SIGNIFICANT OLIGOMERIZATION REMARK 300 STATES. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.08467 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 SER A 28 REMARK 465 GLN A 29 REMARK 465 GLY A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 ALA A 33 REMARK 465 ASN A 34 REMARK 465 ALA A 35 REMARK 465 GLU A 36 REMARK 465 THR A 37 REMARK 465 GLN A 38 REMARK 465 THR A 39 REMARK 465 THR A 40 REMARK 465 ILE A 41 REMARK 465 PRO A 42 REMARK 465 GLY B 0 REMARK 465 ALA B 26 REMARK 465 PRO B 27 REMARK 465 SER B 28 REMARK 465 GLN B 29 REMARK 465 GLY B 30 REMARK 465 ALA B 31 REMARK 465 THR B 32 REMARK 465 ALA B 33 REMARK 465 ASN B 34 REMARK 465 ALA B 35 REMARK 465 GLU B 36 REMARK 465 THR B 37 REMARK 465 GLN B 38 REMARK 465 THR B 39 REMARK 465 THR B 40 REMARK 465 ILE B 41 REMARK 465 PRO B 42 REMARK 465 LEU B 43 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 43 CG CD1 CD2 REMARK 470 LYS A 90 CE NZ REMARK 470 LYS A 100 CD CE NZ REMARK 470 ARG A 134 CD NE CZ NH1 NH2 REMARK 470 GLU A 141 CD OE1 OE2 REMARK 470 LYS A 146 CE NZ REMARK 470 LYS B 96 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 65 44.68 -146.07 REMARK 500 ASP A 91 68.62 -105.92 REMARK 500 SER B 65 45.51 -142.88 REMARK 500 GLU B 92 127.02 30.14 REMARK 500 GLU B 92 150.56 -1.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 365930 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. THE CLONED REMARK 999 CONSTRUCT CONTAINS RESIDUES 26-150 OF THE FULL LENGTH PROTEIN. DBREF 3LHN A 26 150 UNP Q8ECH9 Q8ECH9_SHEON 26 150 DBREF 3LHN B 26 150 UNP Q8ECH9 Q8ECH9_SHEON 26 150 SEQADV 3LHN GLY A 0 UNP Q8ECH9 EXPRESSION TAG SEQADV 3LHN GLY B 0 UNP Q8ECH9 EXPRESSION TAG SEQRES 1 A 126 GLY ALA PRO SER GLN GLY ALA THR ALA ASN ALA GLU THR SEQRES 2 A 126 GLN THR THR ILE PRO LEU GLY ASP THR SER GLN ASN ALA SEQRES 3 A 126 LEU ASP TRP PRO GLY VAL TYR GLU GLY VAL LEU PRO CYS SEQRES 4 A 126 ALA SER CYS GLU GLY ILE GLN THR THR LEU THR LEU GLN SEQRES 5 A 126 ALA ASP ASN SER PHE GLU LEU LYS SER ILE TYR LEU GLY SEQRES 6 A 126 LYS ASP GLU SER ILE PHE LYS VAL ALA GLY LYS PHE ASP SEQRES 7 A 126 TRP ASP SER ASN GLY SER LYS ILE THR LEU SER ASP GLY SEQRES 8 A 126 SER LYS TYR LEU VAL GLY GLU ASN GLN LEU LEU MSE LEU SEQRES 9 A 126 ASP THR GLU GLY ASN ARG ILE THR GLY GLY LEU ALA GLU SEQRES 10 A 126 HIS TYR ILE LEU LYS LYS LYS GLY MSE SEQRES 1 B 126 GLY ALA PRO SER GLN GLY ALA THR ALA ASN ALA GLU THR SEQRES 2 B 126 GLN THR THR ILE PRO LEU GLY ASP THR SER GLN ASN ALA SEQRES 3 B 126 LEU ASP TRP PRO GLY VAL TYR GLU GLY VAL LEU PRO CYS SEQRES 4 B 126 ALA SER CYS GLU GLY ILE GLN THR THR LEU THR LEU GLN SEQRES 5 B 126 ALA ASP ASN SER PHE GLU LEU LYS SER ILE TYR LEU GLY SEQRES 6 B 126 LYS ASP GLU SER ILE PHE LYS VAL ALA GLY LYS PHE ASP SEQRES 7 B 126 TRP ASP SER ASN GLY SER LYS ILE THR LEU SER ASP GLY SEQRES 8 B 126 SER LYS TYR LEU VAL GLY GLU ASN GLN LEU LEU MSE LEU SEQRES 9 B 126 ASP THR GLU GLY ASN ARG ILE THR GLY GLY LEU ALA GLU SEQRES 10 B 126 HIS TYR ILE LEU LYS LYS LYS GLY MSE MODRES 3LHN MSE A 127 MET SELENOMETHIONINE MODRES 3LHN MSE A 150 MET SELENOMETHIONINE MODRES 3LHN MSE B 127 MET SELENOMETHIONINE MODRES 3LHN MSE B 150 MET SELENOMETHIONINE HET MSE A 127 16 HET MSE A 150 18 HET MSE B 127 16 HET MSE B 150 18 HET SO4 A 1 5 HET GOL A 2 12 HET GOL B 3 12 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 HOH *228(H2 O) HELIX 1 1 THR A 46 LEU A 51 1 6 HELIX 2 2 LEU A 139 HIS A 142 5 4 HELIX 3 3 THR B 46 LEU B 51 1 6 HELIX 4 4 LEU B 139 HIS B 142 5 4 SHEET 1 A 9 GLY A 55 LEU A 61 0 SHEET 2 A 9 GLY A 68 LEU A 75 -1 O THR A 71 N GLY A 59 SHEET 3 A 9 SER A 80 LEU A 88 -1 O GLU A 82 N THR A 74 SHEET 4 A 9 SER A 93 TRP A 103 -1 O VAL A 97 N LEU A 83 SHEET 5 A 9 LYS A 109 LEU A 112 -1 O THR A 111 N ASP A 102 SHEET 6 A 9 LYS A 117 GLY A 121 -1 O TYR A 118 N ILE A 110 SHEET 7 A 9 GLN A 124 MSE A 127 -1 O GLN A 124 N GLY A 121 SHEET 8 A 9 ILE A 144 LYS A 147 -1 O LEU A 145 N LEU A 125 SHEET 9 A 9 GLY A 55 LEU A 61 -1 N GLU A 58 O LYS A 146 SHEET 1 B 9 SER B 93 LYS B 100 0 SHEET 2 B 9 SER B 80 TYR B 87 -1 N LEU B 83 O VAL B 97 SHEET 3 B 9 ILE B 69 LEU B 75 -1 N THR B 72 O LYS B 84 SHEET 4 B 9 GLY B 55 LEU B 61 -1 N GLY B 59 O THR B 71 SHEET 5 B 9 ILE B 144 LYS B 147 -1 O LYS B 146 N GLU B 58 SHEET 6 B 9 GLN B 124 MSE B 127 -1 N LEU B 125 O LEU B 145 SHEET 7 B 9 LYS B 117 GLY B 121 -1 N GLY B 121 O GLN B 124 SHEET 8 B 9 LYS B 109 THR B 111 -1 N ILE B 110 O TYR B 118 SHEET 9 B 9 ASP B 102 TRP B 103 -1 N ASP B 102 O THR B 111 SSBOND 1 CYS A 63 CYS A 66 1555 1555 2.12 SSBOND 2 CYS B 63 CYS B 66 1555 1555 2.13 LINK C LEU A 126 N AMSE A 127 1555 1555 1.34 LINK C LEU A 126 N BMSE A 127 1555 1555 1.33 LINK C AMSE A 127 N LEU A 128 1555 1555 1.32 LINK C BMSE A 127 N LEU A 128 1555 1555 1.33 LINK C AGLY A 149 N AMSE A 150 1555 1555 1.34 LINK C BGLY A 149 N BMSE A 150 1555 1555 1.34 LINK C LEU B 126 N AMSE B 127 1555 1555 1.33 LINK C LEU B 126 N BMSE B 127 1555 1555 1.32 LINK C AMSE B 127 N LEU B 128 1555 1555 1.33 LINK C BMSE B 127 N LEU B 128 1555 1555 1.33 LINK C GLY B 149 N AMSE B 150 1555 1555 1.33 LINK C GLY B 149 N BMSE B 150 1555 1555 1.33 SITE 1 AC1 5 ASN A 133 ARG A 134 HOH A 177 HOH A 233 SITE 2 AC1 5 LYS B 90 SITE 1 AC2 10 VAL A 60 LEU A 61 PRO A 62 GLU A 67 SITE 2 AC2 10 GLY A 68 HIS A 142 HOH A 153 HOH A 154 SITE 3 AC2 10 HOH A 216 HOH A 263 SITE 1 AC3 10 GLY A 138 VAL B 60 LEU B 61 PRO B 62 SITE 2 AC3 10 GLU B 67 GLY B 68 HIS B 142 HOH B 207 SITE 3 AC3 10 HOH B 221 HOH B 237 CRYST1 50.185 50.185 300.508 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019926 0.011504 0.000000 0.00000 SCALE2 0.000000 0.023009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003328 0.00000