HEADER HYDROLASE 22-JAN-10 3LHO TITLE CRYSTAL STRUCTURE OF PUTATIVE HYDROLASE (YP_751971.1) FROM SHEWANELLA TITLE 2 FRIGIDIMARINA NCIMB 400 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA FRIGIDIMARINA; SOURCE 3 ORGANISM_TAXID: 318167; SOURCE 4 STRAIN: NCIMB 400; SOURCE 5 GENE: SFRI_3296; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 30-OCT-24 3LHO 1 REMARK REVDAT 5 01-FEB-23 3LHO 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 3LHO 1 REMARK LINK REVDAT 3 01-NOV-17 3LHO 1 REMARK REVDAT 2 13-JUL-11 3LHO 1 VERSN REVDAT 1 09-MAR-10 3LHO 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE HYDROLASE (YP_751971.1) FROM JRNL TITL 2 SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1366 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1994 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 204 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.72000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.789 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2134 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1415 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2893 ; 1.459 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3468 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 265 ; 6.608 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.273 ;24.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;12.794 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 316 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2348 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 423 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1282 ; 1.875 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 518 ; 0.597 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2071 ; 2.781 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 852 ; 5.022 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 816 ; 6.894 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9667 13.7145 28.7525 REMARK 3 T TENSOR REMARK 3 T11: 0.0154 T22: 0.0149 REMARK 3 T33: 0.0268 T12: -0.0072 REMARK 3 T13: -0.0092 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.2433 L22: 0.9846 REMARK 3 L33: 1.1480 L12: -0.2532 REMARK 3 L13: 0.1738 L23: -0.5047 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0033 S13: -0.0171 REMARK 3 S21: -0.1061 S22: 0.0106 S23: 0.0740 REMARK 3 S31: 0.0903 S32: -0.0186 S33: -0.0457 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 3 4. THE METAL PRESENT IN THE PUTATIVE ACTIVE SITE WAS TENTATIVELY REMARK 3 ASSIGNED AS NICKLE (NI) BASED ON X-RAY FLURORESCENCE REMARK 3 SPECTROSCOPY AND ANOMALOUS DIFFERENCE FOURIERS. NICKLE IONS WERE REMARK 3 PRESENT DURING PURIFICATION AS CHELATING AGENT. 5. GLYCEROL (GOL) REMARK 3 , SULFATE (SO4) AND POLYETHYLENE GLYCOL FRAGMENTS (PEG AND PG4) REMARK 3 MODELED WERE PRESENT IN CRYSTALLIZATION/CRYO CONDITIONS. REMARK 4 REMARK 4 3LHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.57 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97949,0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27317 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.961 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.69500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3000M AMMONIUM SULFATE, 2.2500% REMARK 280 POLYETHYLENE GLYCOL 400, 15.0000% GLYCEROL, 0.1M HEPES PH 7.57, REMARK 280 NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.04900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.55600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.51750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.55600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.04900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.51750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 254 REMARK 465 ALA A 255 REMARK 465 ASP A 256 REMARK 465 LYS A 257 REMARK 465 ILE A 258 REMARK 465 PHE A 259 REMARK 465 GLU A 260 REMARK 465 SER A 261 REMARK 465 THR A 262 REMARK 465 ASN A 263 REMARK 465 ALA A 264 REMARK 465 MSE A 265 REMARK 465 MSE A 266 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 251 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 47.94 -79.10 REMARK 500 SER A 195 -76.90 -55.79 REMARK 500 SER A 230 -92.14 -101.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 267 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 NE2 REMARK 620 2 HIS A 164 NE2 104.9 REMARK 620 3 GLU A 234 OE1 89.5 95.9 REMARK 620 4 HOH A 306 O 96.2 99.6 161.5 REMARK 620 5 HOH A 310 O 89.9 163.6 91.2 71.3 REMARK 620 6 HOH A 327 O 160.7 94.2 90.9 78.0 70.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 268 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 277 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 381550 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LHO A 1 266 UNP Q07XY2 Q07XY2_SHEFN 1 266 SEQADV 3LHO GLY A 0 UNP Q07XY2 EXPRESSION TAG SEQRES 1 A 267 GLY MSE HIS THR ASP VAL ASN ALA LEU PHE ALA ALA LEU SEQRES 2 A 267 TRP GLN ASP TYR ILE LYS MSE THR PRO SER ALA ALA LYS SEQRES 3 A 267 ILE HIS GLN LEU LEU GLY HIS GLY ALA PRO ILE ILE ASN SEQRES 4 A 267 ASP HIS ILE ALA LEU ARG THR PHE ASN ILE ALA LYS VAL SEQRES 5 A 267 ASN LEU SER VAL LEU ALA LYS HIS PHE THR SER ILE GLY SEQRES 6 A 267 TYR VAL ASP SER GLY ASP TYR LYS PHE GLU GLN LYS LYS SEQRES 7 A 267 LEU ILE ALA LYS HIS PHE GLU HIS PRO ASP PRO LYS GLN SEQRES 8 A 267 PRO LYS VAL PHE ILE SER GLU LEU LEU VAL GLU GLU PHE SEQRES 9 A 267 SER PRO GLU VAL GLN LYS SER ILE HIS GLY LEU ILE ASP SEQRES 10 A 267 GLN VAL ASP ILE ALA ALA THR THR ALA ASP ASN PHE ILE SEQRES 11 A 267 TYR SER GLY ARG HIS TRP ASP VAL ASP LYS ALA THR TYR SEQRES 12 A 267 GLN ALA LEU LEU ALA GLU SER GLU TYR ALA ALA TRP VAL SEQRES 13 A 267 ALA ALA LEU GLY TYR ARG ALA ASN HIS PHE THR VAL SER SEQRES 14 A 267 ILE ASN ASP LEU PRO GLU PHE GLU ARG ILE GLU ASP VAL SEQRES 15 A 267 ASN GLN ALA LEU LYS GLN ALA GLY PHE VAL LEU ASN SER SEQRES 16 A 267 SER GLY GLY GLU VAL LYS GLY SER PRO GLU VAL LEU LEU SEQRES 17 A 267 GLU GLN SER SER THR MSE ALA ASP LYS VAL VAL VAL ASN SEQRES 18 A 267 PHE THR ASP GLY ASP VAL GLU ILE PRO SER CYS PHE TYR SEQRES 19 A 267 GLU PHE ALA ARG ARG TYR PRO MSE ALA ASN GLY GLN LEU SEQRES 20 A 267 TYR THR GLY PHE VAL ALA ALA SER ALA ASP LYS ILE PHE SEQRES 21 A 267 GLU SER THR ASN ALA MSE MSE MODRES 3LHO MSE A 1 MET SELENOMETHIONINE MODRES 3LHO MSE A 19 MET SELENOMETHIONINE MODRES 3LHO MSE A 213 MET SELENOMETHIONINE MODRES 3LHO MSE A 241 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 19 8 HET MSE A 213 8 HET MSE A 241 8 HET NI A 267 1 HET SO4 A 268 5 HET SO4 A 269 5 HET SO4 A 270 5 HET GOL A 271 6 HET GOL A 272 6 HET GOL A 273 6 HET GOL A 274 6 HET PEG A 275 7 HET PEG A 276 7 HET PG4 A 277 13 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NI NI 2+ FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 PEG 2(C4 H10 O3) FORMUL 12 PG4 C8 H18 O5 FORMUL 13 HOH *204(H2 O) HELIX 1 1 ASP A 4 THR A 20 1 17 HELIX 2 2 THR A 20 HIS A 32 1 13 HELIX 3 3 ILE A 48 VAL A 51 5 4 HELIX 4 4 ASN A 52 SER A 62 1 11 HELIX 5 5 VAL A 100 PHE A 103 5 4 HELIX 6 6 SER A 104 ASP A 116 1 13 HELIX 7 7 GLN A 117 VAL A 118 5 2 HELIX 8 8 ASP A 119 ALA A 125 5 7 HELIX 9 9 ASN A 127 SER A 131 5 5 HELIX 10 10 ASP A 138 SER A 149 1 12 HELIX 11 11 SER A 149 GLY A 159 1 11 HELIX 12 12 ARG A 177 ALA A 188 1 12 HELIX 13 13 PRO A 203 VAL A 205 5 3 SHEET 1 A 8 VAL A 66 PHE A 73 0 SHEET 2 A 8 LEU A 78 GLU A 84 -1 O LEU A 78 N PHE A 73 SHEET 3 A 8 LYS A 92 LEU A 98 -1 O ILE A 95 N LYS A 81 SHEET 4 A 8 ASN A 38 PHE A 46 1 N LEU A 43 O PHE A 94 SHEET 5 A 8 HIS A 164 SER A 168 -1 O THR A 166 N ASP A 39 SHEET 6 A 8 GLU A 234 ARG A 238 1 O ALA A 236 N VAL A 167 SHEET 7 A 8 LEU A 207 SER A 211 -1 N GLU A 208 O ARG A 237 SHEET 8 A 8 LYS A 200 SER A 202 -1 N LYS A 200 O GLN A 209 SHEET 1 B 2 LYS A 216 PHE A 221 0 SHEET 2 B 2 GLY A 224 PRO A 229 -1 O VAL A 226 N VAL A 219 LINK C GLY A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N HIS A 2 1555 1555 1.34 LINK C LYS A 18 N MSE A 19 1555 1555 1.34 LINK C MSE A 19 N THR A 20 1555 1555 1.34 LINK C THR A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N ALA A 214 1555 1555 1.33 LINK C PRO A 240 N MSE A 241 1555 1555 1.32 LINK C MSE A 241 N ALA A 242 1555 1555 1.33 LINK NE2 HIS A 40 NI NI A 267 1555 1555 2.13 LINK NE2 HIS A 164 NI NI A 267 1555 1555 2.13 LINK OE1 GLU A 234 NI NI A 267 1555 1555 2.16 LINK NI NI A 267 O HOH A 306 1555 1555 2.29 LINK NI NI A 267 O HOH A 310 1555 1555 2.04 LINK NI NI A 267 O HOH A 327 1555 1555 2.42 SITE 1 AC1 7 HIS A 40 HIS A 164 THR A 166 GLU A 234 SITE 2 AC1 7 HOH A 306 HOH A 310 HOH A 327 SITE 1 AC2 6 GLY A 0 ILE A 48 ALA A 49 HIS A 112 SITE 2 AC2 6 HOH A 286 HOH A 382 SITE 1 AC3 4 PHE A 73 GLU A 74 GLN A 75 HOH A 334 SITE 1 AC4 4 HIS A 2 THR A 3 ASP A 4 ALA A 7 SITE 1 AC5 6 SER A 149 GLU A 150 TYR A 151 HOH A 285 SITE 2 AC5 6 HOH A 388 HOH A 461 SITE 1 AC6 4 ILE A 63 HIS A 85 VAL A 191 HOH A 387 SITE 1 AC7 5 GLN A 209 SER A 210 SER A 211 GLU A 234 SITE 2 AC7 5 HOH A 476 SITE 1 AC8 4 LYS A 50 ASP A 70 LYS A 72 HOH A 286 SITE 1 AC9 4 LYS A 18 ARG A 161 VAL A 218 HOH A 287 SITE 1 BC1 4 ARG A 44 LYS A 76 ASN A 163 HOH A 301 SITE 1 BC2 5 PRO A 21 SER A 22 LYS A 25 GLY A 189 SITE 2 BC2 5 PHE A 190 CRYST1 42.098 75.035 91.112 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023754 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010976 0.00000