HEADER SIGNALING PROTEIN 24-JAN-10 3LIF TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE PUTATIVE TITLE 2 HISTIDINE KINASE RPHK1S-Z16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DIGUANYLATE CYCLASE (GGDEF) WITH PAS/PAC DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 40-293); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; SOURCE 3 ORGANISM_TAXID: 1076; SOURCE 4 GENE: RPA3616; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS PDC FOLD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,W.A.HENDRICKSON REVDAT 4 06-NOV-24 3LIF 1 REMARK LINK REVDAT 3 01-NOV-17 3LIF 1 REMARK REVDAT 2 11-AUG-10 3LIF 1 JRNL REVDAT 1 05-MAY-10 3LIF 0 JRNL AUTH Z.ZHANG,W.A.HENDRICKSON JRNL TITL STRUCTURAL CHARACTERIZATION OF THE PREDOMINANT FAMILY OF JRNL TITL 2 HISTIDINE KINASE SENSOR DOMAINS. JRNL REF J.MOL.BIOL. V. 400 335 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20435045 JRNL DOI 10.1016/J.JMB.2010.04.049 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2078 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3340 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 93 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.316 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.262 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.230 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3987 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5435 ; 2.417 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ;15.295 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 183 ;34.527 ;22.623 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;23.511 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.500 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 606 ; 0.183 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3060 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 0.991 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3935 ; 1.886 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1562 ; 2.750 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1499 ; 4.576 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3LIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918, 0.97935, 0.96788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56039 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.35200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4AC, 0.1M CITRATE PH5.6, 30% REMARK 280 MPD, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 92.39000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 92.39000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 92.39000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 92.39000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 92.39000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 92.39000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 92.39000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 92.39000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 92.39000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 46.19500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 138.58500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 46.19500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 46.19500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 46.19500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 138.58500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 46.19500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 138.58500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 46.19500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 138.58500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 46.19500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 138.58500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 138.58500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 46.19500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 138.58500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 46.19500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 46.19500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 46.19500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 138.58500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 46.19500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 46.19500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 138.58500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 138.58500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 138.58500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 46.19500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 138.58500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 46.19500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 138.58500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 46.19500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 46.19500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 46.19500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 40 REMARK 465 GLY A 41 REMARK 465 TYR A 42 REMARK 465 TRP A 286 REMARK 465 ARG A 287 REMARK 465 GLU A 288 REMARK 465 ALA A 289 REMARK 465 VAL A 290 REMARK 465 ARG A 291 REMARK 465 SER A 292 REMARK 465 ASP A 293 REMARK 465 LYS B 40 REMARK 465 GLY B 41 REMARK 465 TYR B 42 REMARK 465 ASP B 43 REMARK 465 SER B 44 REMARK 465 HIS B 45 REMARK 465 ARG B 287 REMARK 465 GLU B 288 REMARK 465 ALA B 289 REMARK 465 VAL B 290 REMARK 465 ARG B 291 REMARK 465 SER B 292 REMARK 465 ASP B 293 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 72 NH2 ARG A 268 1.75 REMARK 500 C2 CIT A 294 O HOH A 328 1.82 REMARK 500 C4 CIT A 294 O HOH A 328 1.85 REMARK 500 OG SER B 243 O4 CIT B 294 1.88 REMARK 500 O ASP A 245 O6 CIT A 294 1.96 REMARK 500 OE1 GLN B 72 NH2 ARG B 268 1.99 REMARK 500 O LEU B 106 O HOH B 12 2.13 REMARK 500 O LEU A 106 O HOH A 11 2.16 REMARK 500 C3 CIT A 294 O HOH A 328 2.18 REMARK 500 O THR A 175 N GLY A 178 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 PRO A 89 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 ALA A 117 N - CA - C ANGL. DEV. = -19.7 DEGREES REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 VAL A 184 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL A 185 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP A 245 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 VAL A 275 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ASP B 111 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ALA B 117 N - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 GLY B 182 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 VAL B 183 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 VAL B 183 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 VAL B 184 CB - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 84 -76.92 -44.39 REMARK 500 MSE A 85 -55.29 -24.03 REMARK 500 ARG A 88 53.84 -152.67 REMARK 500 HIS A 90 56.10 -142.17 REMARK 500 PRO A 91 179.10 -54.54 REMARK 500 PRO A 93 -2.98 -48.07 REMARK 500 PHE A 95 -38.91 -39.53 REMARK 500 ASP A 104 -9.89 -57.58 REMARK 500 SER A 135 -5.42 -57.86 REMARK 500 ARG A 160 6.44 -66.10 REMARK 500 VAL A 183 122.42 -175.00 REMARK 500 MSE A 233 151.03 -49.95 REMARK 500 LYS A 238 -45.82 -131.14 REMARK 500 SER A 243 163.89 159.96 REMARK 500 ARG A 268 0.49 81.99 REMARK 500 ASP A 280 124.15 115.46 REMARK 500 SER A 281 -114.52 -169.29 REMARK 500 VAL A 282 104.09 157.64 REMARK 500 LEU A 283 87.93 51.38 REMARK 500 SER A 284 -163.32 -120.81 REMARK 500 ILE B 47 -8.70 -58.55 REMARK 500 ALA B 48 -13.71 -149.42 REMARK 500 TRP B 87 42.48 -100.41 REMARK 500 ARG B 88 37.58 172.24 REMARK 500 PRO B 89 -31.41 -26.70 REMARK 500 SER B 92 170.90 -57.29 REMARK 500 LEU B 102 -70.27 -40.19 REMARK 500 ALA B 117 -75.94 91.47 REMARK 500 LYS B 127 -93.59 -22.42 REMARK 500 ASN B 146 -53.35 -127.58 REMARK 500 VAL B 183 92.65 93.74 REMARK 500 LYS B 238 -45.87 -137.08 REMARK 500 SER B 243 104.52 155.54 REMARK 500 TYR B 247 118.94 -174.78 REMARK 500 ARG B 268 -8.70 80.64 REMARK 500 SER B 281 51.65 140.45 REMARK 500 VAL B 282 -78.20 67.72 REMARK 500 LEU B 283 42.88 -70.32 REMARK 500 SER B 284 -47.82 -161.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 88 PRO A 89 -114.90 REMARK 500 ASP A 116 ALA A 117 -128.91 REMARK 500 GLY A 182 VAL A 183 -129.60 REMARK 500 SER A 243 PRO A 244 -126.42 REMARK 500 PRO A 244 ASP A 245 109.88 REMARK 500 ASP B 116 ALA B 117 50.85 REMARK 500 GLY B 182 VAL B 183 -33.87 REMARK 500 ARG B 242 SER B 243 -107.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 294 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LI8 RELATED DB: PDB REMARK 900 RELATED ID: 3LI9 RELATED DB: PDB REMARK 900 RELATED ID: 3LIA RELATED DB: PDB REMARK 900 RELATED ID: 3LIB RELATED DB: PDB REMARK 900 RELATED ID: 3LIC RELATED DB: PDB REMARK 900 RELATED ID: 3LID RELATED DB: PDB REMARK 900 RELATED ID: 3LIE RELATED DB: PDB DBREF 3LIF A 40 293 UNP Q6N3S7 Q6N3S7_RHOPA 40 293 DBREF 3LIF B 40 293 UNP Q6N3S7 Q6N3S7_RHOPA 40 293 SEQRES 1 A 254 LYS GLY TYR ASP SER HIS LYS ILE ALA LEU ALA GLN SER SEQRES 2 A 254 GLU THR GLU MSE ARG ASN LEU SER HIS SER LEU ALA GLU SEQRES 3 A 254 HIS ALA THR HIS THR PHE GLN GLY ALA ASP VAL VAL LEU SEQRES 4 A 254 ASP ASP ILE VAL SER PHE MSE LYS TRP ARG PRO HIS PRO SEQRES 5 A 254 SER PRO VAL PHE ASN GLU ARG LEU ARG ALA LEU ALA ASP SEQRES 6 A 254 ASN LEU PRO GLN LEU SER ASP VAL ALA ILE LEU ASP ALA SEQRES 7 A 254 ASP GLY GLN LEU THR TYR ALA SER VAL LYS PRO VAL PRO SEQRES 8 A 254 ALA LEU ASP ASN SER ASP ARG SER TYR PHE ARG TYR HIS SEQRES 9 A 254 ARG ALA ASN ASP ASP HIS THR LEU LEU ILE THR GLY PRO SEQRES 10 A 254 ILE GLN SER ARG THR SER GLY VAL TRP VAL PHE VAL VAL SEQRES 11 A 254 SER ARG ARG LEU GLU THR THR ASP GLY LYS PHE PHE GLY SEQRES 12 A 254 VAL VAL VAL ALA THR ILE GLU SER GLU TYR PHE SER THR SEQRES 13 A 254 PHE TYR LYS THR PHE ASP LEU GLY PRO GLY GLY SER ILE SEQRES 14 A 254 SER LEU LEU HIS SER ASP GLY ARG LEU LEU ILE GLN TRP SEQRES 15 A 254 PRO SER LEU GLN THR GLY ARG ASP MSE ALA ASN MSE VAL SEQRES 16 A 254 LEU PHE GLN LYS ALA LEU PRO ARG SER PRO ASP GLY TYR SEQRES 17 A 254 TYR LEU THR VAL SER PRO PHE ASP GLY LEU THR LYS TYR SEQRES 18 A 254 LEU ALA TYR ARG ARG VAL SER ARG TYR PRO LEU VAL VAL SEQRES 19 A 254 THR VAL ALA ARG THR GLU ASP SER VAL LEU SER GLY TRP SEQRES 20 A 254 ARG GLU ALA VAL ARG SER ASP SEQRES 1 B 254 LYS GLY TYR ASP SER HIS LYS ILE ALA LEU ALA GLN SER SEQRES 2 B 254 GLU THR GLU MSE ARG ASN LEU SER HIS SER LEU ALA GLU SEQRES 3 B 254 HIS ALA THR HIS THR PHE GLN GLY ALA ASP VAL VAL LEU SEQRES 4 B 254 ASP ASP ILE VAL SER PHE MSE LYS TRP ARG PRO HIS PRO SEQRES 5 B 254 SER PRO VAL PHE ASN GLU ARG LEU ARG ALA LEU ALA ASP SEQRES 6 B 254 ASN LEU PRO GLN LEU SER ASP VAL ALA ILE LEU ASP ALA SEQRES 7 B 254 ASP GLY GLN LEU THR TYR ALA SER VAL LYS PRO VAL PRO SEQRES 8 B 254 ALA LEU ASP ASN SER ASP ARG SER TYR PHE ARG TYR HIS SEQRES 9 B 254 ARG ALA ASN ASP ASP HIS THR LEU LEU ILE THR GLY PRO SEQRES 10 B 254 ILE GLN SER ARG THR SER GLY VAL TRP VAL PHE VAL VAL SEQRES 11 B 254 SER ARG ARG LEU GLU THR THR ASP GLY LYS PHE PHE GLY SEQRES 12 B 254 VAL VAL VAL ALA THR ILE GLU SER GLU TYR PHE SER THR SEQRES 13 B 254 PHE TYR LYS THR PHE ASP LEU GLY PRO GLY GLY SER ILE SEQRES 14 B 254 SER LEU LEU HIS SER ASP GLY ARG LEU LEU ILE GLN TRP SEQRES 15 B 254 PRO SER LEU GLN THR GLY ARG ASP MSE ALA ASN MSE VAL SEQRES 16 B 254 LEU PHE GLN LYS ALA LEU PRO ARG SER PRO ASP GLY TYR SEQRES 17 B 254 TYR LEU THR VAL SER PRO PHE ASP GLY LEU THR LYS TYR SEQRES 18 B 254 LEU ALA TYR ARG ARG VAL SER ARG TYR PRO LEU VAL VAL SEQRES 19 B 254 THR VAL ALA ARG THR GLU ASP SER VAL LEU SER GLY TRP SEQRES 20 B 254 ARG GLU ALA VAL ARG SER ASP MODRES 3LIF MSE A 56 MET SELENOMETHIONINE MODRES 3LIF MSE A 85 MET SELENOMETHIONINE MODRES 3LIF MSE A 230 MET SELENOMETHIONINE MODRES 3LIF MSE A 233 MET SELENOMETHIONINE MODRES 3LIF MSE B 56 MET SELENOMETHIONINE MODRES 3LIF MSE B 85 MET SELENOMETHIONINE MODRES 3LIF MSE B 230 MET SELENOMETHIONINE MODRES 3LIF MSE B 233 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 85 8 HET MSE A 230 8 HET MSE A 233 8 HET MSE B 56 8 HET MSE B 85 8 HET MSE B 230 8 HET MSE B 233 8 HET MPD A 1 8 HET CIT A 294 13 HET MPD B 2 8 HET CIT B 294 13 HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CIT CITRIC ACID FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 MPD 2(C6 H14 O2) FORMUL 4 CIT 2(C6 H8 O7) FORMUL 7 HOH *93(H2 O) HELIX 1 1 ASP A 43 TRP A 87 1 45 HELIX 2 2 PRO A 93 LEU A 106 1 14 HELIX 3 3 ARG A 137 ASN A 146 1 10 HELIX 4 4 GLU A 189 LYS A 198 1 10 HELIX 5 5 MSE A 233 LYS A 238 1 6 HELIX 6 6 LYS A 238 SER A 243 1 6 HELIX 7 7 ALA B 48 TRP B 87 1 40 HELIX 8 8 PRO B 93 LEU B 106 1 14 HELIX 9 9 ARG B 137 ALA B 145 1 9 HELIX 10 10 GLU B 189 THR B 199 1 11 HELIX 11 11 MSE B 233 LYS B 238 1 6 HELIX 12 12 LYS B 238 SER B 243 1 6 SHEET 1 A 5 LEU A 121 ALA A 124 0 SHEET 2 A 5 LEU A 109 LEU A 115 -1 N ILE A 114 O TYR A 123 SHEET 3 A 5 PHE A 180 ILE A 188 -1 O VAL A 185 N ALA A 113 SHEET 4 A 5 TRP A 165 GLU A 174 -1 N VAL A 169 O ALA A 186 SHEET 5 A 5 LEU A 152 GLN A 158 -1 N THR A 154 O VAL A 168 SHEET 1 B 2 VAL A 129 PRO A 130 0 SHEET 2 B 2 GLN B 225 THR B 226 1 O THR B 226 N VAL A 129 SHEET 1 C 5 LEU A 217 TRP A 221 0 SHEET 2 C 5 SER A 207 HIS A 212 -1 N ILE A 208 O TRP A 221 SHEET 3 C 5 LEU A 271 THR A 278 -1 O VAL A 272 N LEU A 211 SHEET 4 C 5 THR A 258 ARG A 265 -1 N ALA A 262 O VAL A 275 SHEET 5 C 5 ASP A 245 VAL A 251 -1 N THR A 250 O LYS A 259 SHEET 1 D 5 LEU B 121 ALA B 124 0 SHEET 2 D 5 LEU B 109 LEU B 115 -1 N ILE B 114 O TYR B 123 SHEET 3 D 5 PHE B 180 ILE B 188 -1 O VAL B 183 N LEU B 115 SHEET 4 D 5 TRP B 165 GLU B 174 -1 N PHE B 167 O ILE B 188 SHEET 5 D 5 LEU B 152 GLN B 158 -1 N THR B 154 O VAL B 168 SHEET 1 E 5 LEU B 217 TRP B 221 0 SHEET 2 E 5 SER B 207 HIS B 212 -1 N ILE B 208 O TRP B 221 SHEET 3 E 5 LEU B 271 THR B 278 -1 O VAL B 272 N LEU B 211 SHEET 4 E 5 THR B 258 ARG B 265 -1 N ALA B 262 O VAL B 275 SHEET 5 E 5 ASP B 245 VAL B 251 -1 N TYR B 248 O LEU B 261 LINK C GLU A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ARG A 57 1555 1555 1.33 LINK C PHE A 84 N MSE A 85 1555 1555 1.35 LINK C MSE A 85 N LYS A 86 1555 1555 1.35 LINK C ASP A 229 N MSE A 230 1555 1555 1.32 LINK C MSE A 230 N ALA A 231 1555 1555 1.33 LINK C ASN A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N VAL A 234 1555 1555 1.31 LINK C GLU B 55 N MSE B 56 1555 1555 1.32 LINK C MSE B 56 N ARG B 57 1555 1555 1.34 LINK C PHE B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N LYS B 86 1555 1555 1.33 LINK C ASP B 229 N MSE B 230 1555 1555 1.32 LINK C MSE B 230 N ALA B 231 1555 1555 1.33 LINK C ASN B 232 N MSE B 233 1555 1555 1.33 LINK C MSE B 233 N VAL B 234 1555 1555 1.31 CISPEP 1 LYS A 127 PRO A 128 0 -1.51 CISPEP 2 GLY A 155 PRO A 156 0 0.94 CISPEP 3 TRP A 221 PRO A 222 0 6.01 CISPEP 4 ASP A 245 GLY A 246 0 13.17 CISPEP 5 VAL A 282 LEU A 283 0 8.34 CISPEP 6 LEU A 283 SER A 284 0 -5.85 CISPEP 7 SER A 284 GLY A 285 0 -7.59 CISPEP 8 GLY B 155 PRO B 156 0 6.58 CISPEP 9 TRP B 221 PRO B 222 0 9.59 CISPEP 10 SER B 281 VAL B 282 0 -8.61 SITE 1 AC1 5 ARG A 137 TYR A 139 SER A 159 ARG A 160 SITE 2 AC1 5 THR A 161 SITE 1 AC2 6 ARG A 57 ARG A 242 SER A 243 ASP A 245 SITE 2 AC2 6 GLY A 246 HOH A 328 SITE 1 AC3 6 LEU B 132 ARG B 137 TYR B 139 SER B 159 SITE 2 AC3 6 ARG B 160 THR B 161 SITE 1 AC4 5 ARG B 57 ARG B 242 SER B 243 ASP B 245 SITE 2 AC4 5 HOH B 305 CRYST1 184.780 184.780 184.780 90.00 90.00 90.00 P 43 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005412 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005412 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005412 0.00000