HEADER HYDROLASE 26-JAN-10 3LJE TITLE THE X-RAY STRUCTURE OF ZEBRAFISH RNASE5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZEBRAFISH RNASE5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS ANGIOGENINS, FISH RNASES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.RUSSO KRAUSS,A.MERLINO,F.COSCIA,L.MAZZARELLA,F.SICA REVDAT 3 06-SEP-23 3LJE 1 REMARK REVDAT 2 05-JAN-11 3LJE 1 JRNL REVDAT 1 24-NOV-10 3LJE 0 JRNL AUTH E.PIZZO,A.MERLINO,M.TURANO,I.RUSSO KRAUSS,F.COSCIA, JRNL AUTH 2 A.ZANFARDINO,M.VARCAMONTI,A.FURIA,C.GIANCOLA,L.MAZZARELLA, JRNL AUTH 3 F.SICA,G.D'ALESSIO JRNL TITL A NEW RNASE SHEDS LIGHT ON THE RNASE/ANGIOGENIN SUBFAMILY JRNL TITL 2 FROM ZEBRAFISH. JRNL REF BIOCHEM.J. V. 433 345 2010 JRNL REFN ISSN 0264-6021 JRNL PMID 21050179 JRNL DOI 10.1042/BJ20100892 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.PIZZO,G.D'ALESSIO REMARK 1 TITL THE SUCCESS OF THE RNASE SCAFFOLD IN THE ADVANCE OF REMARK 1 TITL 2 BIOSCIENCE AND IN EVOLUTION. REMARK 1 REF GENE V. 406 8 2007 REMARK 1 REFN ISSN 0378-1119 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.PIZZO,P.BUONANNO,A.DI MARO,S.PONTICELLI,S.DE FALCO, REMARK 1 AUTH 2 N.QUARTO,M.V.CUBELLIS,G.D'ALESSIO REMARK 1 TITL RIBONUCLEASES AND ANGIOGENINS FROM FISH REMARK 1 REF J.BIOL.CHEM. V. 281 27454 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 13153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 945 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LJD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% MPEG 2K, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M SODIUM ACETATE , PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 63.24450 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 63.24450 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 63.24450 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 63.24450 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 63.24450 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 31.62225 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 94.86675 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 94.86675 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 94.86675 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 31.62225 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 94.86675 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 31.62225 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 94.86675 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 31.62225 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 31.62225 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 31.62225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ILE A 122 REMARK 465 ILE A 123 REMARK 465 ASP A 124 REMARK 465 VAL A 125 REMARK 465 ASN A 126 REMARK 465 ARG A 127 REMARK 465 SER A 128 REMARK 465 GLY A 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 120 O HOH A 5116 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 5090 O HOH A 5090 24555 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 47 CA VAL A 47 CB -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 19 96.81 -161.84 REMARK 500 THR A 40 138.59 61.58 REMARK 500 ASN A 70 -128.43 61.35 REMARK 500 LEU A 72 -166.29 -109.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 5000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VQ8 RELATED DB: PDB REMARK 900 THE X-RAY STRUCTURE OF ZEBRAFISH RNASE 1 REMARK 900 RELATED ID: 2VQ9 RELATED DB: PDB REMARK 900 THE X-RAY STRUCTURE OF ZEBRAFISH RNASE 3 REMARK 900 RELATED ID: 3LJD RELATED DB: PDB REMARK 900 THE X-RAY STRUCTURE OF ZEBRAFISH RNASE 1 AT PH 4.5 FROM A NEW REMARK 900 CRYSTAL FORM REMARK 900 RELATED ID: 3LN8 RELATED DB: PDB REMARK 900 THE X-RAY STRUCTURE OF ZF-RNASE-1 FROM A NEW CRYSTAL FORM AT PH 7.3 DBREF 3LJE A 0 129 PDB 3LJE 3LJE 0 129 SEQRES 1 A 130 MET LYS VAL PRO PRO ASP VAL ASP PRO ARG TYR GLN LYS SEQRES 2 A 130 PHE LEU ARG GLN HIS VAL ASP ALA ASP MET SER VAL GLN SEQRES 3 A 130 LYS CYS ASP ARG ALA MET SER ILE LYS LYS ILE THR ALA SEQRES 4 A 130 GLY THR GLY ASN ASP CYS LYS GLU VAL ASN THR PHE ILE SEQRES 5 A 130 GLN ALA THR LYS ASP ARG ILE THR THR VAL CYS GLY ASP SEQRES 6 A 130 ALA GLY THR PRO VAL ASN ASN LEU PHE LYS SER ASN GLN SEQRES 7 A 130 PRO PHE PRO VAL VAL THR CYS LYS LEU LYS SER GLY ASN SEQRES 8 A 130 ARG ARG PRO ASN CYS GLN TYR ARG GLY THR SER SER THR SEQRES 9 A 130 ARG TYR ILE VAL LEU GLY CYS ASP LYS GLY TRP PRO VAL SEQRES 10 A 130 HIS TYR ASP GLU GLY ILE ILE ASP VAL ASN ARG SER GLY HET ACT A5000 4 HET SO4 A1000 5 HET SO4 A1001 5 HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *110(H2 O) HELIX 1 1 VAL A 6 VAL A 18 1 13 HELIX 2 2 SER A 23 GLN A 25 5 3 HELIX 3 3 LYS A 26 LYS A 34 1 9 HELIX 4 4 THR A 54 THR A 60 1 7 HELIX 5 5 VAL A 61 GLY A 63 5 3 SHEET 1 A 3 VAL A 47 ILE A 51 0 SHEET 2 A 3 PHE A 79 SER A 88 -1 O VAL A 82 N PHE A 50 SHEET 3 A 3 GLN A 96 ARG A 104 -1 O GLN A 96 N LYS A 87 SHEET 1 B 4 GLY A 66 VAL A 69 0 SHEET 2 B 4 LEU A 72 SER A 75 -1 O LYS A 74 N THR A 67 SHEET 3 B 4 VAL A 107 ASP A 111 -1 O LEU A 108 N PHE A 73 SHEET 4 B 4 TRP A 114 TYR A 118 -1 O TRP A 114 N ASP A 111 SSBOND 1 CYS A 27 CYS A 84 1555 1555 2.06 SSBOND 2 CYS A 44 CYS A 95 1555 1555 2.04 SSBOND 3 CYS A 62 CYS A 110 1555 1555 2.05 CISPEP 1 ARG A 92 PRO A 93 0 0.92 SITE 1 AC1 6 ARG A 15 GLN A 16 LYS A 35 ILE A 36 SITE 2 AC1 6 THR A 37 HOH A5062 SITE 1 AC2 7 GLN A 16 HIS A 17 LYS A 45 HIS A 117 SITE 2 AC2 7 TYR A 118 HOH A5005 HOH A5010 SITE 1 AC3 8 THR A 54 ARG A 57 GLN A 77 HOH A5006 SITE 2 AC3 8 HOH A5033 HOH A5044 HOH A5051 HOH A5064 CRYST1 126.489 126.489 126.489 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007906 0.00000