HEADER TRANSCRIPTION REGULATOR 26-JAN-10 3LJL TITLE THE CRYSTAL STRUCTURE OF THE FULL-LENGTH TRANSCRIPTIONAL REGULATOR TITLE 2 LUXT FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR LUXT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 223926; SOURCE 4 STRAIN: RIMD 2210633; SOURCE 5 GENE: VPA0420; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION KEYWDS 3 REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.GU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 13-JUL-11 3LJL 1 VERSN REVDAT 1 09-FEB-10 3LJL 0 JRNL AUTH K.TAN,M.GU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF THE FULL-LENGTH TRANSCRIPTIONAL JRNL TITL 2 REGULATOR LUXT FROM VIBRIO PARAHAEMOLYTICUS RIMD 2210633. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 9531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 483 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2372 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.426 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.657 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2441 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3281 ; 1.777 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 7.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;37.434 ;24.144 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 449 ;24.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.035 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1793 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 0.542 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2357 ; 1.056 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 969 ; 1.748 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 924 ; 3.040 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7550 59.0990 44.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3820 REMARK 3 T33: 0.8635 T12: -0.0655 REMARK 3 T13: -0.0375 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 15.6924 L22: 5.6517 REMARK 3 L33: 11.7122 L12: -3.2817 REMARK 3 L13: 8.2339 L23: -5.8550 REMARK 3 S TENSOR REMARK 3 S11: 0.1845 S12: -0.8979 S13: -0.3908 REMARK 3 S21: 0.1023 S22: 0.1787 S23: 0.8098 REMARK 3 S31: 0.2791 S32: -0.7914 S33: -0.3632 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 153 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7980 54.9630 57.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: -0.0055 REMARK 3 T33: 0.8185 T12: -0.0070 REMARK 3 T13: 0.0115 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 5.7009 L22: 2.0361 REMARK 3 L33: 13.6814 L12: -0.2224 REMARK 3 L13: 4.2394 L23: -0.8005 REMARK 3 S TENSOR REMARK 3 S11: -0.1930 S12: -0.2243 S13: 0.3866 REMARK 3 S21: -0.0453 S22: 0.1952 S23: 0.2720 REMARK 3 S31: -0.2195 S32: -0.0459 S33: -0.0021 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 62 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9310 49.8480 22.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.6316 T22: 0.7499 REMARK 3 T33: 1.0279 T12: 0.1878 REMARK 3 T13: -0.1109 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 6.6161 L22: 4.0422 REMARK 3 L33: 13.4854 L12: 2.6000 REMARK 3 L13: 4.1104 L23: -1.1501 REMARK 3 S TENSOR REMARK 3 S11: 0.2075 S12: 1.0534 S13: -0.5194 REMARK 3 S21: -0.5143 S22: -0.1587 S23: 0.2311 REMARK 3 S31: 0.1291 S32: 0.6050 S33: -0.0488 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 25.7480 52.1060 44.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.4867 T22: 0.1614 REMARK 3 T33: 0.7818 T12: 0.0486 REMARK 3 T13: 0.0742 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 12.4336 L22: 2.5392 REMARK 3 L33: 5.4774 L12: -2.6355 REMARK 3 L13: 0.9165 L23: -1.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.3690 S12: 0.5347 S13: 0.4022 REMARK 3 S21: -0.7525 S22: -0.2020 S23: -0.3498 REMARK 3 S31: -0.4733 S32: -0.0208 S33: -0.1670 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LJL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-10. REMARK 100 THE RCSB ID CODE IS RCSB057357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929, 0.97944 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10042 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES, 12% PEG 20000, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.35200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.67600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.67600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.35200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 GLU A 111 CG CD OE1 OE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 PHE B 67 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 -72.14 -60.09 REMARK 500 THR A 35 -82.70 -44.51 REMARK 500 ASP A 63 9.48 52.75 REMARK 500 LEU A 91 -11.86 -48.46 REMARK 500 THR A 109 -135.30 -93.30 REMARK 500 MSE B 32 107.44 -58.46 REMARK 500 PHE B 58 -81.92 -70.05 REMARK 500 THR B 59 -32.27 -31.78 REMARK 500 ASP B 63 -137.22 -124.50 REMARK 500 LYS B 78 35.84 -142.99 REMARK 500 GLN B 85 -55.34 -28.37 REMARK 500 ALA B 113 75.54 38.67 REMARK 500 PHE B 116 -29.17 -38.51 REMARK 500 SER B 152 7.47 -68.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 109 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC91483 RELATED DB: TARGETDB DBREF 3LJL A 1 153 UNP Q87J33 Q87J33_VIBPA 1 153 DBREF 3LJL B 1 153 UNP Q87J33 Q87J33_VIBPA 1 153 SEQADV 3LJL SER A -2 UNP Q87J33 EXPRESSION TAG SEQADV 3LJL ASN A -1 UNP Q87J33 EXPRESSION TAG SEQADV 3LJL ALA A 0 UNP Q87J33 EXPRESSION TAG SEQADV 3LJL SER B -2 UNP Q87J33 EXPRESSION TAG SEQADV 3LJL ASN B -1 UNP Q87J33 EXPRESSION TAG SEQADV 3LJL ALA B 0 UNP Q87J33 EXPRESSION TAG SEQRES 1 A 156 SER ASN ALA MSE PRO LYS ARG SER LYS GLU ASP THR GLU SEQRES 2 A 156 ILE THR ILE GLN LYS ILE MSE ASP ALA VAL VAL ASP GLN SEQRES 3 A 156 LEU LEU ARG LEU GLY TYR ASP LYS MSE SER TYR THR THR SEQRES 4 A 156 LEU SER GLN GLN THR GLY VAL SER ARG THR GLY ILE SER SEQRES 5 A 156 HIS HIS PHE PRO LYS LYS THR ASP PHE THR ALA ALA LEU SEQRES 6 A 156 ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU HIS LEU GLU SEQRES 7 A 156 PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SER TRP ILE SEQRES 8 A 156 LYS ALA LEU GLU ASP SER GLU PHE LEU ALA ILE LEU ARG SEQRES 9 A 156 LEU LEU PHE HIS HIS ILE VAL THR SER GLU SER ALA HIS SEQRES 10 A 156 GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU TYR LYS MSE SEQRES 11 A 156 VAL GLU SER GLN PHE GLY SER GLY GLY ASP LYS GLU LEU SEQRES 12 A 156 GLU TRP LEU ILE GLY ARG SER LEU ILE GLN MSE SER LYS SEQRES 1 B 156 SER ASN ALA MSE PRO LYS ARG SER LYS GLU ASP THR GLU SEQRES 2 B 156 ILE THR ILE GLN LYS ILE MSE ASP ALA VAL VAL ASP GLN SEQRES 3 B 156 LEU LEU ARG LEU GLY TYR ASP LYS MSE SER TYR THR THR SEQRES 4 B 156 LEU SER GLN GLN THR GLY VAL SER ARG THR GLY ILE SER SEQRES 5 B 156 HIS HIS PHE PRO LYS LYS THR ASP PHE THR ALA ALA LEU SEQRES 6 B 156 ASP GLY ARG ILE PHE LYS MSE PHE ILE GLU HIS LEU GLU SEQRES 7 B 156 PHE GLU LYS GLY LEU ASP ALA PHE SER GLN SER TRP ILE SEQRES 8 B 156 LYS ALA LEU GLU ASP SER GLU PHE LEU ALA ILE LEU ARG SEQRES 9 B 156 LEU LEU PHE HIS HIS ILE VAL THR SER GLU SER ALA HIS SEQRES 10 B 156 GLU PHE ALA ALA ASN GLY ILE ASP ARG LEU TYR LYS MSE SEQRES 11 B 156 VAL GLU SER GLN PHE GLY SER GLY GLY ASP LYS GLU LEU SEQRES 12 B 156 GLU TRP LEU ILE GLY ARG SER LEU ILE GLN MSE SER LYS MODRES 3LJL MSE A 17 MET SELENOMETHIONINE MODRES 3LJL MSE A 32 MET SELENOMETHIONINE MODRES 3LJL MSE A 69 MET SELENOMETHIONINE MODRES 3LJL MSE A 127 MET SELENOMETHIONINE MODRES 3LJL MSE A 151 MET SELENOMETHIONINE MODRES 3LJL MSE B 17 MET SELENOMETHIONINE MODRES 3LJL MSE B 32 MET SELENOMETHIONINE MODRES 3LJL MSE B 69 MET SELENOMETHIONINE MODRES 3LJL MSE B 127 MET SELENOMETHIONINE MODRES 3LJL MSE B 151 MET SELENOMETHIONINE HET MSE A 17 8 HET MSE A 32 8 HET MSE A 69 8 HET MSE A 127 8 HET MSE A 151 8 HET MSE B 17 8 HET MSE B 32 8 HET MSE B 69 8 HET MSE B 127 8 HET MSE B 151 8 HET MES B 154 12 HET MES A 154 12 HETNAM MSE SELENOMETHIONINE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MES 2(C6 H13 N O4 S) HELIX 1 1 GLU A 7 LEU A 27 1 21 HELIX 2 2 LEU A 27 MSE A 32 1 6 HELIX 3 3 SER A 33 GLY A 42 1 10 HELIX 4 4 SER A 44 PHE A 52 1 9 HELIX 5 5 LYS A 55 ASP A 63 1 9 HELIX 6 6 GLY A 64 ILE A 71 1 8 HELIX 7 7 GLU A 72 LEU A 74 5 3 HELIX 8 8 GLY A 79 LEU A 91 1 13 HELIX 9 9 ASP A 93 THR A 109 1 17 HELIX 10 10 HIS A 114 GLY A 133 1 20 HELIX 11 11 SER A 134 MSE A 151 1 18 HELIX 12 12 LYS B 6 LEU B 27 1 22 HELIX 13 13 LEU B 27 MSE B 32 1 6 HELIX 14 14 SER B 33 THR B 41 1 9 HELIX 15 15 SER B 44 PHE B 52 1 9 HELIX 16 16 LYS B 55 LEU B 62 1 8 HELIX 17 17 GLY B 64 ILE B 71 1 8 HELIX 18 18 GLU B 72 LEU B 74 5 3 HELIX 19 19 LYS B 78 LEU B 91 1 14 HELIX 20 20 ASP B 93 SER B 110 1 18 HELIX 21 21 HIS B 114 GLY B 133 1 20 HELIX 22 22 GLY B 135 MSE B 151 1 17 LINK C ILE A 16 N MSE A 17 1555 1555 1.32 LINK C MSE A 17 N ASP A 18 1555 1555 1.33 LINK C LYS A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N SER A 33 1555 1555 1.33 LINK C LYS A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N PHE A 70 1555 1555 1.32 LINK C LYS A 126 N MSE A 127 1555 1555 1.34 LINK C MSE A 127 N VAL A 128 1555 1555 1.32 LINK C GLN A 150 N MSE A 151 1555 1555 1.33 LINK C MSE A 151 N SER A 152 1555 1555 1.32 LINK C ILE B 16 N MSE B 17 1555 1555 1.35 LINK C MSE B 17 N ASP B 18 1555 1555 1.33 LINK C LYS B 31 N MSE B 32 1555 1555 1.34 LINK C MSE B 32 N SER B 33 1555 1555 1.34 LINK C LYS B 68 N MSE B 69 1555 1555 1.32 LINK C MSE B 69 N PHE B 70 1555 1555 1.32 LINK C LYS B 126 N MSE B 127 1555 1555 1.33 LINK C MSE B 127 N VAL B 128 1555 1555 1.31 LINK C GLN B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N SER B 152 1555 1555 1.33 SITE 1 AC1 6 GLU A 72 GLU A 75 SER B 33 TYR B 34 SITE 2 AC1 6 THR B 35 ARG B 45 SITE 1 AC2 9 LEU A 62 GLY A 64 ARG A 65 ILE A 66 SITE 2 AC2 9 PHE A 67 ILE A 99 PHE A 116 GLY A 120 SITE 3 AC2 9 LEU A 124 CRYST1 89.792 89.792 125.028 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011137 0.006430 0.000000 0.00000 SCALE2 0.000000 0.012860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007998 0.00000