HEADER TRANSFERASE 27-JAN-10 3LK5 TITLE CRYSTAL STRUCTURE OF PUTATIVE GERANYLGERANYL PYROPHOSPHATE SYNTHASE TITLE 2 FROM CORYNEBACTERIUM GLUTAMICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM; SOURCE 3 ORGANISM_TAXID: 1718; SOURCE 4 STRAIN: ATCC 13032; SOURCE 5 GENE: CGL2172; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, GERANYLGERANYL KEYWDS 2 PYROPHOSPHATE SYNTHASE, ISOPRENE BIOSYNTHESIS, PSI-2, TRANSFERASE, KEYWDS 3 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.TORO,Y.PATSKOVSKY,J.M.SAUDER,S.K.BURLEY,S.C.ALMO, AUTHOR 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 10-FEB-21 3LK5 1 AUTHOR JRNL REMARK SEQADV REVDAT 6 2 1 LINK REVDAT 5 21-NOV-18 3LK5 1 AUTHOR REVDAT 4 01-NOV-17 3LK5 1 REMARK REVDAT 3 13-JUL-11 3LK5 1 VERSN REVDAT 2 22-DEC-10 3LK5 1 AUTHOR KEYWDS REVDAT 1 09-MAR-10 3LK5 0 JRNL AUTH V.N.MALASHKEVICH,R.TORO,Y.PATSKOVSKY,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE GERANYLGERANYL PYROPHOSPHATE JRNL TITL 2 SYNTHASE FROM CORYNEBACTERIUM GLUTAMICUM ATCC 13032 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1870 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2566 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2523 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2586 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3510 ; 1.414 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 337 ; 4.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;32.364 ;24.083 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 430 ;14.627 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.975 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 409 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1962 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1657 ; 1.273 ; 3.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2643 ; 4.216 ;50.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 929 ; 9.223 ;50.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 864 ; 1.743 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 370 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 RESIDUE RANGE : A 381 A 575 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4547 94.4191 1.0118 REMARK 3 T TENSOR REMARK 3 T11: 0.0717 T22: 0.0339 REMARK 3 T33: 0.0221 T12: 0.0069 REMARK 3 T13: -0.0016 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.2987 L22: 1.4213 REMARK 3 L33: 0.5109 L12: 0.5006 REMARK 3 L13: -0.2764 L23: -0.3503 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0492 S13: 0.0207 REMARK 3 S21: 0.0527 S22: 0.1305 S23: 0.0393 REMARK 3 S31: 0.0254 S32: -0.1011 S33: -0.0809 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 3LK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37221 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2M AMMONIUM SULFATE, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.35567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.71133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.71133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.35567 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 217.25806 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -17.35567 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 ASP A 5 REMARK 465 VAL A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 114 REMARK 465 ASP A 115 REMARK 465 THR A 116 REMARK 465 ARG A 117 REMARK 465 ARG A 118 REMARK 465 GLY A 119 REMARK 465 ALA A 120 REMARK 465 PRO A 121 REMARK 465 THR A 122 REMARK 465 VAL A 123 REMARK 465 HIS A 124 REMARK 465 ARG A 125 REMARK 465 ALA A 126 REMARK 465 VAL A 127 REMARK 465 GLU A 128 REMARK 465 ALA A 129 REMARK 465 ASP A 130 REMARK 465 HIS A 131 REMARK 465 ARG A 132 REMARK 465 ALA A 133 REMARK 465 ASN A 134 REMARK 465 ASN A 135 REMARK 465 PHE A 136 REMARK 465 GLU A 137 REMARK 465 GLY A 138 REMARK 465 ASP A 139 REMARK 465 PRO A 140 REMARK 465 GLU A 141 REMARK 465 HIS A 142 REMARK 465 ARG A 371 REMARK 465 ARG A 372 REMARK 465 GLU A 373 REMARK 465 GLY A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 HIS A 377 REMARK 465 HIS A 378 REMARK 465 HIS A 379 REMARK 465 HIS A 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 331 O HOH A 393 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 160 CD GLU A 160 OE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 201 52.10 34.79 REMARK 500 ILE A 221 -55.19 -127.30 REMARK 500 THR A 312 -44.50 -134.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-20008A RELATED DB: TARGETDB DBREF 3LK5 A 5 372 UNP Q8NNM1 Q8NNM1_CORGL 3 370 SEQADV 3LK5 MSE A 1 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 SER A 2 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 LEU A 3 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 LYS A 4 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 GLU A 373 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 GLY A 374 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 375 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 376 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 377 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 378 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 379 UNP Q8NNM1 EXPRESSION TAG SEQADV 3LK5 HIS A 380 UNP Q8NNM1 EXPRESSION TAG SEQRES 1 A 380 MSE SER LEU LYS ASP VAL SER LEU SER SER PHE ASP ALA SEQRES 2 A 380 HIS ASP LEU ASP LEU ASP LYS PHE PRO GLU VAL VAL ARG SEQRES 3 A 380 ASP ARG LEU THR GLN PHE LEU ASP ALA GLN GLU LEU THR SEQRES 4 A 380 ILE ALA ASP ILE GLY ALA PRO VAL THR ASP ALA VAL ALA SEQRES 5 A 380 HIS LEU ARG SER PHE VAL LEU ASN GLY GLY LYS ARG ILE SEQRES 6 A 380 ARG PRO LEU TYR ALA TRP ALA GLY PHE LEU ALA ALA GLN SEQRES 7 A 380 GLY HIS LYS ASN SER SER GLU LYS LEU GLU SER VAL LEU SEQRES 8 A 380 ASP ALA ALA ALA SER LEU GLU PHE ILE GLN ALA CYS ALA SEQRES 9 A 380 LEU ILE HIS ASP ASP ILE ILE ASP SER SER ASP THR ARG SEQRES 10 A 380 ARG GLY ALA PRO THR VAL HIS ARG ALA VAL GLU ALA ASP SEQRES 11 A 380 HIS ARG ALA ASN ASN PHE GLU GLY ASP PRO GLU HIS PHE SEQRES 12 A 380 GLY VAL SER VAL SER ILE LEU ALA GLY ASP MSE ALA LEU SEQRES 13 A 380 VAL TRP ALA GLU ASP MSE LEU GLN ASP SER GLY LEU SER SEQRES 14 A 380 ALA GLU ALA LEU ALA ARG THR ARG ASP ALA TRP ARG GLY SEQRES 15 A 380 MSE ARG THR GLU VAL ILE GLY GLY GLN LEU LEU ASP ILE SEQRES 16 A 380 TYR LEU GLU SER HIS ALA ASN GLU SER VAL GLU LEU ALA SEQRES 17 A 380 ASP SER VAL ASN ARG PHE LYS THR ALA ALA TYR THR ILE SEQRES 18 A 380 ALA ARG PRO LEU HIS LEU GLY ALA SER ILE ALA GLY GLY SEQRES 19 A 380 SER PRO GLN LEU ILE ASP ALA LEU LEU HIS TYR GLY HIS SEQRES 20 A 380 ASP ILE GLY ILE ALA PHE GLN LEU ARG ASP ASP LEU LEU SEQRES 21 A 380 GLY VAL PHE GLY ASP PRO ALA ILE THR GLY LYS PRO ALA SEQRES 22 A 380 GLY ASP ASP ILE ARG GLU GLY LYS ARG THR VAL LEU LEU SEQRES 23 A 380 ALA LEU ALA LEU GLN ARG ALA ASP LYS GLN SER PRO GLU SEQRES 24 A 380 ALA ALA THR ALA ILE ARG ALA GLY VAL GLY LYS VAL THR SEQRES 25 A 380 SER PRO GLU ASP ILE ALA VAL ILE THR GLU HIS ILE ARG SEQRES 26 A 380 ALA THR GLY ALA GLU GLU GLU VAL GLU GLN ARG ILE SER SEQRES 27 A 380 GLN LEU THR GLU SER GLY LEU ALA HIS LEU ASP ASP VAL SEQRES 28 A 380 ASP ILE PRO ASP GLU VAL ARG ALA GLN LEU ARG ALA LEU SEQRES 29 A 380 ALA ILE ARG SER THR GLU ARG ARG GLU GLY HIS HIS HIS SEQRES 30 A 380 HIS HIS HIS MODRES 3LK5 MSE A 154 MET SELENOMETHIONINE MODRES 3LK5 MSE A 162 MET SELENOMETHIONINE MODRES 3LK5 MSE A 183 MET SELENOMETHIONINE HET MSE A 154 8 HET MSE A 162 8 HET MSE A 183 8 HET GOL A 500 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *194(H2 O) HELIX 1 1 LYS A 20 GLY A 44 1 25 HELIX 2 2 GLY A 44 ASN A 60 1 17 HELIX 3 3 ARG A 64 GLY A 79 1 16 HELIX 4 4 LYS A 86 ASP A 112 1 27 HELIX 5 5 PHE A 143 ASP A 165 1 23 HELIX 6 6 SER A 169 HIS A 200 1 32 HELIX 7 7 SER A 204 THR A 216 1 13 HELIX 8 8 THR A 216 ILE A 221 1 6 HELIX 9 9 ILE A 221 ALA A 232 1 12 HELIX 10 10 SER A 235 GLY A 264 1 30 HELIX 11 11 ASP A 265 GLY A 270 1 6 HELIX 12 12 GLY A 274 GLU A 279 1 6 HELIX 13 13 THR A 283 SER A 297 1 15 HELIX 14 14 SER A 297 VAL A 308 1 12 HELIX 15 15 SER A 313 THR A 327 1 15 HELIX 16 16 GLY A 328 LEU A 348 1 21 HELIX 17 17 ASP A 349 VAL A 351 5 3 HELIX 18 18 PRO A 354 GLU A 370 1 17 LINK C ASP A 153 N MSE A 154 1555 1555 1.34 LINK C MSE A 154 N ALA A 155 1555 1555 1.33 LINK C ASP A 161 N MSE A 162 1555 1555 1.32 LINK C MSE A 162 N LEU A 163 1555 1555 1.34 LINK C GLY A 182 N MSE A 183 1555 1555 1.34 LINK C MSE A 183 N ARG A 184 1555 1555 1.33 SITE 1 AC1 8 GLY A 62 LYS A 63 ARG A 64 ILE A 65 SITE 2 AC1 8 ARG A 66 GLN A 101 HOH A 386 HOH A 411 CRYST1 125.434 125.434 52.067 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007972 0.004603 0.000000 0.00000 SCALE2 0.000000 0.009206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019206 0.00000