data_3LKY # _entry.id 3LKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LKY pdb_00003lky 10.2210/pdb3lky/pdb RCSB RCSB057404 ? ? WWPDB D_1000057404 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2nu5 'Crystal structure of a complex of griffithsin cocrystallized with N-acetylglucosamine' unspecified PDB 2nuo 'Crystal structure of a complex of griffithsin with glucose' unspecified PDB 2hyq 'Crystal structure of a complex of griffithsin with 6alpha-mannobiose' unspecified PDB 2hyr 'Crystal structure of a complex of griffithsin with maltose' unspecified PDB 2gty 'Crystal structure of unliganded griffithsin' unspecified PDB 2guc 'Crystal structure of a complex of griffithsin with mannose at 1.78 A resolution.' unspecified PDB 2gud 'Crystal structure of a complex of griffithsin with mannose at 0.94 A resolution' unspecified PDB 2gue 'Crystal structure of a complex of griffithsin with N-acetylglucosamine' unspecified PDB 2gux 'Selenomethionine derivative of griffithsin' unspecified PDB 3LL0 'Monomeric Griffithsin with two Gly-Ser Insertions' unspecified PDB 3LL1 'Monomeric Griffithsin with a Single Gly-Ser Insertion and Mutations to Remove Residual Self-Association' unspecified PDB 3LL2 'Monomeric Griffithsin in Complex with a High-Mannose Branched Carbohydrate' unspecified # _pdbx_database_status.entry_id 3LKY _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-28 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Moulaei, T.' 1 'Wlodawer, A.' 2 # _citation.id primary _citation.title ;Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity. ; _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 1104 _citation.page_last 1115 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20826337 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.05.016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moulaei, T.' 1 ? primary 'Shenoy, S.R.' 2 ? primary 'Giomarelli, B.' 3 ? primary 'Thomas, C.' 4 ? primary 'McMahon, J.B.' 5 ? primary 'Dauter, Z.' 6 ? primary ;O'Keefe, B.R. ; 7 ? primary 'Wlodawer, A.' 8 ? # _cell.length_a 48.6 _cell.length_b 48.6 _cell.length_c 94.2 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3LKY _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 3LKY _symmetry.Int_Tables_number 169 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Griffithsin 12844.933 1 ? 'insertion of Gly-Ser after S16' ? ? 2 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 5 water nat water 18.015 117 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name GRFT # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLTHRKFGGSGGSPFSGSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNM GRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_seq_one_letter_code_can ;SLTHRKFGGSGGSPFSGSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNM GRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 THR n 1 4 HIS n 1 5 ARG n 1 6 LYS n 1 7 PHE n 1 8 GLY n 1 9 GLY n 1 10 SER n 1 11 GLY n 1 12 GLY n 1 13 SER n 1 14 PRO n 1 15 PHE n 1 16 SER n 1 17 GLY n 1 18 SER n 1 19 GLY n 1 20 LEU n 1 21 SER n 1 22 SER n 1 23 ILE n 1 24 ALA n 1 25 VAL n 1 26 ARG n 1 27 SER n 1 28 GLY n 1 29 SER n 1 30 TYR n 1 31 LEU n 1 32 ASP n 1 33 ALA n 1 34 ILE n 1 35 ILE n 1 36 ILE n 1 37 ASP n 1 38 GLY n 1 39 VAL n 1 40 HIS n 1 41 HIS n 1 42 GLY n 1 43 GLY n 1 44 SER n 1 45 GLY n 1 46 GLY n 1 47 ASN n 1 48 LEU n 1 49 SER n 1 50 PRO n 1 51 THR n 1 52 PHE n 1 53 THR n 1 54 PHE n 1 55 GLY n 1 56 SER n 1 57 GLY n 1 58 GLU n 1 59 TYR n 1 60 ILE n 1 61 SER n 1 62 ASN n 1 63 MET n 1 64 THR n 1 65 ILE n 1 66 ARG n 1 67 SER n 1 68 GLY n 1 69 ASP n 1 70 TYR n 1 71 ILE n 1 72 ASP n 1 73 ASN n 1 74 ILE n 1 75 SER n 1 76 PHE n 1 77 GLU n 1 78 THR n 1 79 ASN n 1 80 MET n 1 81 GLY n 1 82 ARG n 1 83 ARG n 1 84 PHE n 1 85 GLY n 1 86 PRO n 1 87 TYR n 1 88 GLY n 1 89 GLY n 1 90 SER n 1 91 GLY n 1 92 GLY n 1 93 SER n 1 94 ALA n 1 95 ASN n 1 96 THR n 1 97 LEU n 1 98 SER n 1 99 ASN n 1 100 VAL n 1 101 LYS n 1 102 VAL n 1 103 ILE n 1 104 GLN n 1 105 ILE n 1 106 ASN n 1 107 GLY n 1 108 SER n 1 109 ALA n 1 110 GLY n 1 111 ASP n 1 112 TYR n 1 113 LEU n 1 114 ASP n 1 115 SER n 1 116 LEU n 1 117 ASP n 1 118 ILE n 1 119 TYR n 1 120 TYR n 1 121 GLU n 1 122 GLN n 1 123 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Red alga' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Q66D336 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Griffithsia _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 373036 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRFIN_GRISQ _struct_ref.pdbx_db_accession P84801 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDXIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGR RFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3LKY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 123 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P84801 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3LKY GLY A 17 A UNP P84801 ? ? insertion 16 1 1 3LKY SER A 18 B UNP P84801 ? ? insertion 16 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LKY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.50 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '0.1 M sodium acetate, 0.15 M ammonium sulfate, 25% w/v PEG 3350, pH 4.0, vapor diffusion, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2009-04-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si(220)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_wavelength_list 1.0000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID # _reflns.entry_id 3LKY _reflns.d_resolution_high 1.100 _reflns.d_resolution_low 30.000 _reflns.number_obs 48948 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_netI_over_sigmaI 13.700 _reflns.pdbx_chi_squared 1.093 _reflns.pdbx_redundancy 6.200 _reflns.percent_possible_obs 97.900 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.10 1.12 ? ? ? 0.583 ? ? 0.783 3.50 ? 2485 99.70 ? 1 1.12 1.14 ? ? ? 0.531 ? ? 0.835 4.00 ? 2475 99.30 ? 2 1.14 1.16 ? ? ? 0.501 ? ? 0.895 4.40 ? 2461 99.50 ? 3 1.16 1.18 ? ? ? 0.466 ? ? 0.954 4.90 ? 2480 99.30 ? 4 1.18 1.21 ? ? ? 0.431 ? ? 0.983 5.30 ? 2490 99.10 ? 5 1.21 1.24 ? ? ? 0.412 ? ? 1.060 5.60 ? 2471 99.10 ? 6 1.24 1.27 ? ? ? 0.355 ? ? 1.085 5.80 ? 2469 99.00 ? 7 1.27 1.30 ? ? ? 0.300 ? ? 1.006 5.90 ? 2445 98.70 ? 8 1.30 1.34 ? ? ? 0.250 ? ? 1.054 5.90 ? 2469 98.60 ? 9 1.34 1.39 ? ? ? 0.196 ? ? 1.090 6.00 ? 2444 98.30 ? 10 1.39 1.44 ? ? ? 0.158 ? ? 1.143 6.00 ? 2420 97.90 ? 11 1.44 1.49 ? ? ? 0.129 ? ? 1.204 6.10 ? 2461 97.80 ? 12 1.49 1.56 ? ? ? 0.109 ? ? 1.326 6.10 ? 2439 97.40 ? 13 1.56 1.64 ? ? ? 0.096 ? ? 1.291 6.30 ? 2421 97.00 ? 14 1.64 1.75 ? ? ? 0.078 ? ? 1.279 6.50 ? 2413 96.60 ? 15 1.75 1.88 ? ? ? 0.065 ? ? 1.250 6.70 ? 2399 96.10 ? 16 1.88 2.07 ? ? ? 0.055 ? ? 1.103 6.90 ? 2384 95.20 ? 17 2.07 2.37 ? ? ? 0.049 ? ? 1.117 7.20 ? 2372 94.50 ? 18 2.37 2.98 ? ? ? 0.066 ? ? 1.082 9.10 ? 2415 95.40 ? 19 2.98 30.00 ? ? ? 0.057 ? ? 1.010 12.00 ? 2535 99.50 ? 20 # _refine.entry_id 3LKY _refine.ls_d_res_high 1.110 _refine.ls_d_res_low 25.17 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.9 _refine.ls_number_reflns_obs 47848 _refine.ls_number_reflns_all 48896 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.159 _refine.ls_R_factor_R_work 0.159 _refine.ls_wR_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.159 _refine.ls_wR_factor_R_free 0.181 _refine.ls_percent_reflns_R_free 2.100 _refine.ls_number_reflns_R_free 1048 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 16.782 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.090 _refine.aniso_B[2][2] 0.090 _refine.aniso_B[3][3] -0.140 _refine.aniso_B[1][2] 0.050 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.976 _refine.correlation_coeff_Fo_to_Fc_free 0.982 _refine.overall_SU_R_Cruickshank_DPI 0.032 _refine.overall_SU_R_free 0.029 _refine.pdbx_overall_ESU_R 0.030 _refine.pdbx_overall_ESU_R_Free 0.027 _refine.overall_SU_ML 0.020 _refine.overall_SU_B 0.839 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 2HYR _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.901 _refine.B_iso_max 53.46 _refine.B_iso_min 8.28 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 906 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 41 _refine_hist.number_atoms_solvent 117 _refine_hist.number_atoms_total 1064 _refine_hist.d_res_high 1.110 _refine_hist.d_res_low 25.17 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 994 0.020 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 677 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1337 1.967 1.977 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1650 1.013 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 122 7.524 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 41 36.015 23.415 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 155 11.516 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 19.295 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 145 0.120 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1086 0.009 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 207 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 139 0.167 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 671 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 477 0.181 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 561 0.094 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 72 0.146 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 11 0.222 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 35 0.295 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 15 0.151 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 774 2.442 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 265 1.867 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 984 2.914 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 447 4.218 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 353 4.965 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1188 2.396 3.000 ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded 942 6.104 3.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.11 _refine_ls_shell.d_res_low 1.135 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.050 _refine_ls_shell.number_reflns_R_work 3406 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.298 _refine_ls_shell.R_factor_R_free 0.251 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 3480 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LKY _struct.title 'Monomeric Griffithsin with a Single Gly-Ser Insertion' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LKY _struct_keywords.text 'lectin, sugar-binding, anti-HIV, high mannose, Man9, gp120, gp41, jacalin-related, Mannose-binding, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 85 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 83 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 86 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 84 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.68 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 3 ? GLY A 8 ? THR A 3 GLY A 8 A 2 LEU A 113 ? GLN A 122 ? LEU A 111 GLN A 120 A 3 VAL A 100 ? ALA A 109 ? VAL A 98 ALA A 107 A 4 SER A 13 ? SER A 16 ? SER A 13 SER A 16 B 1 VAL A 39 ? GLY A 42 ? VAL A 37 GLY A 40 B 2 LEU A 31 ? ILE A 36 ? LEU A 29 ILE A 34 B 3 SER A 22 ? SER A 27 ? SER A 20 SER A 25 B 4 ASN A 47 ? LEU A 48 ? ASN A 45 LEU A 46 C 1 VAL A 39 ? GLY A 42 ? VAL A 37 GLY A 40 C 2 LEU A 31 ? ILE A 36 ? LEU A 29 ILE A 34 C 3 SER A 22 ? SER A 27 ? SER A 20 SER A 25 C 4 PHE A 52 ? THR A 53 ? PHE A 50 THR A 51 D 1 ARG A 83 ? GLY A 88 ? ARG A 81 GLY A 86 D 2 ILE A 71 ? THR A 78 ? ILE A 69 THR A 76 D 3 ILE A 60 ? SER A 67 ? ILE A 58 SER A 65 D 4 SER A 93 ? SER A 98 ? SER A 91 SER A 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 5 ? N ARG A 5 O ILE A 118 ? O ILE A 116 A 2 3 O TYR A 119 ? O TYR A 117 N ILE A 103 ? N ILE A 101 A 3 4 O ALA A 109 ? O ALA A 107 N SER A 13 ? N SER A 13 B 1 2 O VAL A 39 ? O VAL A 37 N ILE A 36 ? N ILE A 34 B 2 3 O ILE A 35 ? O ILE A 33 N ALA A 24 ? N ALA A 22 B 3 4 N SER A 27 ? N SER A 25 O ASN A 47 ? O ASN A 45 C 1 2 O VAL A 39 ? O VAL A 37 N ILE A 36 ? N ILE A 34 C 2 3 O ILE A 35 ? O ILE A 33 N ALA A 24 ? N ALA A 22 C 3 4 N ILE A 23 ? N ILE A 21 O PHE A 52 ? O PHE A 50 D 1 2 O PHE A 84 ? O PHE A 82 N PHE A 76 ? N PHE A 74 D 2 3 O ASP A 72 ? O ASP A 70 N ARG A 66 ? N ARG A 64 D 3 4 N ILE A 65 ? N ILE A 63 O ASN A 95 ? O ASN A 93 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 122 ? 6 'BINDING SITE FOR RESIDUE GOL A 122' AC2 Software A GOL 123 ? 7 'BINDING SITE FOR RESIDUE GOL A 123' AC3 Software A GOL 124 ? 5 'BINDING SITE FOR RESIDUE GOL A 124' AC4 Software A EDO 125 ? 4 'BINDING SITE FOR RESIDUE EDO A 125' AC5 Software A EDO 126 ? 3 'BINDING SITE FOR RESIDUE EDO A 126' AC6 Software A SO4 127 ? 4 'BINDING SITE FOR RESIDUE SO4 A 127' AC7 Software A SO4 128 ? 6 'BINDING SITE FOR RESIDUE SO4 A 128' AC8 Software A SO4 129 ? 8 'BINDING SITE FOR RESIDUE SO4 A 129' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 11 ? GLY A 11 . ? 1_555 ? 2 AC1 6 GLY A 12 ? GLY A 12 . ? 1_555 ? 3 AC1 6 GLY A 110 ? GLY A 108 . ? 1_555 ? 4 AC1 6 ASP A 111 ? ASP A 109 . ? 1_555 ? 5 AC1 6 TYR A 112 ? TYR A 110 . ? 1_555 ? 6 AC1 6 ASP A 114 ? ASP A 112 . ? 1_555 ? 7 AC2 7 PHE A 7 ? PHE A 7 . ? 1_555 ? 8 AC2 7 GLY A 8 ? GLY A 8 . ? 1_555 ? 9 AC2 7 SER A 67 ? SER A 65 . ? 1_555 ? 10 AC2 7 GLY A 68 ? GLY A 66 . ? 1_555 ? 11 AC2 7 SER A 93 ? SER A 91 . ? 1_555 ? 12 AC2 7 ASN A 95 ? ASN A 93 . ? 1_555 ? 13 AC2 7 HOH J . ? HOH A 163 . ? 1_555 ? 14 AC3 5 SER A 27 ? SER A 25 . ? 1_555 ? 15 AC3 5 GLY A 28 ? GLY A 26 . ? 1_555 ? 16 AC3 5 TYR A 87 ? TYR A 85 . ? 1_555 ? 17 AC3 5 GLY A 88 ? GLY A 86 . ? 1_555 ? 18 AC3 5 HOH J . ? HOH A 213 . ? 6_665 ? 19 AC4 4 MET A 63 ? MET A 61 . ? 1_555 ? 20 AC4 4 THR A 64 ? THR A 62 . ? 1_555 ? 21 AC4 4 SER A 75 ? SER A 73 . ? 1_555 ? 22 AC4 4 HOH J . ? HOH A 206 . ? 1_555 ? 23 AC5 3 ARG A 66 ? ARG A 64 . ? 1_555 ? 24 AC5 3 SER A 93 ? SER A 91 . ? 1_555 ? 25 AC5 3 ALA A 94 ? ALA A 92 . ? 1_555 ? 26 AC6 4 SER A 1 ? SER A 1 . ? 6_555 ? 27 AC6 4 LEU A 2 ? LEU A 2 . ? 6_555 ? 28 AC6 4 TYR A 59 ? TYR A 57 . ? 1_555 ? 29 AC6 4 ASN A 79 ? ASN A 77 . ? 1_555 ? 30 AC7 6 GLU A 77 ? GLU A 75 . ? 5_554 ? 31 AC7 6 ARG A 83 ? ARG A 81 . ? 5_554 ? 32 AC7 6 ASN A 106 ? ASN A 104 . ? 1_555 ? 33 AC7 6 ASP A 117 ? ASP A 115 . ? 1_555 ? 34 AC7 6 TYR A 119 ? TYR A 117 . ? 1_555 ? 35 AC7 6 HOH J . ? HOH A 173 . ? 1_555 ? 36 AC8 8 GLY A 38 ? GLY A 36 . ? 1_555 ? 37 AC8 8 THR A 51 ? THR A 49 . ? 1_555 ? 38 AC8 8 GLY A 92 ? GLY A 90 . ? 6_655 ? 39 AC8 8 HOH J . ? HOH A 152 . ? 6_655 ? 40 AC8 8 HOH J . ? HOH A 157 . ? 1_555 ? 41 AC8 8 HOH J . ? HOH A 185 . ? 6_655 ? 42 AC8 8 HOH J . ? HOH A 217 . ? 1_555 ? 43 AC8 8 HOH J . ? HOH A 239 . ? 1_555 ? # _atom_sites.entry_id 3LKY _atom_sites.fract_transf_matrix[1][1] 0.020576 _atom_sites.fract_transf_matrix[1][2] 0.011880 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023759 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010616 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 HIS 4 4 4 HIS HIS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 GLY 17 16 16 GLY GLY A A n A 1 18 SER 18 16 16 SER SER A B n A 1 19 GLY 19 17 17 GLY GLY A . n A 1 20 LEU 20 18 18 LEU LEU A . n A 1 21 SER 21 19 19 SER SER A . n A 1 22 SER 22 20 20 SER SER A . n A 1 23 ILE 23 21 21 ILE ILE A . n A 1 24 ALA 24 22 22 ALA ALA A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 SER 27 25 25 SER SER A . n A 1 28 GLY 28 26 26 GLY GLY A . n A 1 29 SER 29 27 27 SER SER A . n A 1 30 TYR 30 28 28 TYR TYR A . n A 1 31 LEU 31 29 29 LEU LEU A . n A 1 32 ASP 32 30 30 ASP ASP A . n A 1 33 ALA 33 31 31 ALA ALA A . n A 1 34 ILE 34 32 32 ILE ILE A . n A 1 35 ILE 35 33 33 ILE ILE A . n A 1 36 ILE 36 34 34 ILE ILE A . n A 1 37 ASP 37 35 35 ASP ASP A . n A 1 38 GLY 38 36 36 GLY GLY A . n A 1 39 VAL 39 37 37 VAL VAL A . n A 1 40 HIS 40 38 38 HIS HIS A . n A 1 41 HIS 41 39 39 HIS HIS A . n A 1 42 GLY 42 40 40 GLY GLY A . n A 1 43 GLY 43 41 41 GLY GLY A . n A 1 44 SER 44 42 42 SER SER A . n A 1 45 GLY 45 43 43 GLY GLY A . n A 1 46 GLY 46 44 44 GLY GLY A . n A 1 47 ASN 47 45 45 ASN ASN A . n A 1 48 LEU 48 46 46 LEU LEU A . n A 1 49 SER 49 47 47 SER SER A . n A 1 50 PRO 50 48 48 PRO PRO A . n A 1 51 THR 51 49 49 THR THR A . n A 1 52 PHE 52 50 50 PHE PHE A . n A 1 53 THR 53 51 51 THR THR A . n A 1 54 PHE 54 52 52 PHE PHE A . n A 1 55 GLY 55 53 53 GLY GLY A . n A 1 56 SER 56 54 54 SER SER A . n A 1 57 GLY 57 55 55 GLY GLY A . n A 1 58 GLU 58 56 56 GLU GLU A . n A 1 59 TYR 59 57 57 TYR TYR A . n A 1 60 ILE 60 58 58 ILE ILE A . n A 1 61 SER 61 59 59 SER SER A . n A 1 62 ASN 62 60 60 ASN ASN A . n A 1 63 MET 63 61 61 MET MET A . n A 1 64 THR 64 62 62 THR THR A . n A 1 65 ILE 65 63 63 ILE ILE A . n A 1 66 ARG 66 64 64 ARG ARG A . n A 1 67 SER 67 65 65 SER SER A . n A 1 68 GLY 68 66 66 GLY GLY A . n A 1 69 ASP 69 67 67 ASP ASP A . n A 1 70 TYR 70 68 68 TYR TYR A . n A 1 71 ILE 71 69 69 ILE ILE A . n A 1 72 ASP 72 70 70 ASP ASP A . n A 1 73 ASN 73 71 71 ASN ASN A . n A 1 74 ILE 74 72 72 ILE ILE A . n A 1 75 SER 75 73 73 SER SER A . n A 1 76 PHE 76 74 74 PHE PHE A . n A 1 77 GLU 77 75 75 GLU GLU A . n A 1 78 THR 78 76 76 THR THR A . n A 1 79 ASN 79 77 77 ASN ASN A . n A 1 80 MET 80 78 78 MET MET A . n A 1 81 GLY 81 79 79 GLY GLY A . n A 1 82 ARG 82 80 80 ARG ARG A . n A 1 83 ARG 83 81 81 ARG ARG A . n A 1 84 PHE 84 82 82 PHE PHE A . n A 1 85 GLY 85 83 83 GLY GLY A . n A 1 86 PRO 86 84 84 PRO PRO A . n A 1 87 TYR 87 85 85 TYR TYR A . n A 1 88 GLY 88 86 86 GLY GLY A . n A 1 89 GLY 89 87 87 GLY GLY A . n A 1 90 SER 90 88 88 SER SER A . n A 1 91 GLY 91 89 89 GLY GLY A . n A 1 92 GLY 92 90 90 GLY GLY A . n A 1 93 SER 93 91 91 SER SER A . n A 1 94 ALA 94 92 92 ALA ALA A . n A 1 95 ASN 95 93 93 ASN ASN A . n A 1 96 THR 96 94 94 THR THR A . n A 1 97 LEU 97 95 95 LEU LEU A . n A 1 98 SER 98 96 96 SER SER A . n A 1 99 ASN 99 97 97 ASN ASN A . n A 1 100 VAL 100 98 98 VAL VAL A . n A 1 101 LYS 101 99 99 LYS LYS A . n A 1 102 VAL 102 100 100 VAL VAL A . n A 1 103 ILE 103 101 101 ILE ILE A . n A 1 104 GLN 104 102 102 GLN GLN A . n A 1 105 ILE 105 103 103 ILE ILE A . n A 1 106 ASN 106 104 104 ASN ASN A . n A 1 107 GLY 107 105 105 GLY GLY A . n A 1 108 SER 108 106 106 SER SER A . n A 1 109 ALA 109 107 107 ALA ALA A . n A 1 110 GLY 110 108 108 GLY GLY A . n A 1 111 ASP 111 109 109 ASP ASP A . n A 1 112 TYR 112 110 110 TYR TYR A . n A 1 113 LEU 113 111 111 LEU LEU A . n A 1 114 ASP 114 112 112 ASP ASP A . n A 1 115 SER 115 113 113 SER SER A . n A 1 116 LEU 116 114 114 LEU LEU A . n A 1 117 ASP 117 115 115 ASP ASP A . n A 1 118 ILE 118 116 116 ILE ILE A . n A 1 119 TYR 119 117 117 TYR TYR A . n A 1 120 TYR 120 118 118 TYR TYR A . n A 1 121 GLU 121 119 119 GLU GLU A . n A 1 122 GLN 122 120 120 GLN GLN A . n A 1 123 TYR 123 121 121 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 122 1 GOL GOL A . C 2 GOL 1 123 2 GOL GOL A . D 2 GOL 1 124 3 GOL GOL A . E 3 EDO 1 125 4 EDO EDO A . F 3 EDO 1 126 5 EDO EDO A . G 4 SO4 1 127 6 SO4 SO4 A . H 4 SO4 1 128 7 SO4 SO4 A . I 4 SO4 1 129 8 SO4 SO4 A . J 5 HOH 1 130 1 HOH HOH A . J 5 HOH 2 131 2 HOH HOH A . J 5 HOH 3 132 3 HOH HOH A . J 5 HOH 4 133 4 HOH HOH A . J 5 HOH 5 134 5 HOH HOH A . J 5 HOH 6 135 6 HOH HOH A . J 5 HOH 7 136 7 HOH HOH A . J 5 HOH 8 137 8 HOH HOH A . J 5 HOH 9 138 9 HOH HOH A . J 5 HOH 10 139 10 HOH HOH A . J 5 HOH 11 140 11 HOH HOH A . J 5 HOH 12 141 12 HOH HOH A . J 5 HOH 13 142 13 HOH HOH A . J 5 HOH 14 143 14 HOH HOH A . J 5 HOH 15 144 15 HOH HOH A . J 5 HOH 16 145 16 HOH HOH A . J 5 HOH 17 146 17 HOH HOH A . J 5 HOH 18 147 18 HOH HOH A . J 5 HOH 19 148 19 HOH HOH A . J 5 HOH 20 149 20 HOH HOH A . J 5 HOH 21 150 21 HOH HOH A . J 5 HOH 22 151 22 HOH HOH A . J 5 HOH 23 152 23 HOH HOH A . J 5 HOH 24 153 24 HOH HOH A . J 5 HOH 25 154 25 HOH HOH A . J 5 HOH 26 155 26 HOH HOH A . J 5 HOH 27 156 27 HOH HOH A . J 5 HOH 28 157 28 HOH HOH A . J 5 HOH 29 158 29 HOH HOH A . J 5 HOH 30 159 30 HOH HOH A . J 5 HOH 31 160 31 HOH HOH A . J 5 HOH 32 161 32 HOH HOH A . J 5 HOH 33 162 33 HOH HOH A . J 5 HOH 34 163 34 HOH HOH A . J 5 HOH 35 164 35 HOH HOH A . J 5 HOH 36 165 36 HOH HOH A . J 5 HOH 37 166 37 HOH HOH A . J 5 HOH 38 167 38 HOH HOH A . J 5 HOH 39 168 39 HOH HOH A . J 5 HOH 40 169 40 HOH HOH A . J 5 HOH 41 170 41 HOH HOH A . J 5 HOH 42 171 42 HOH HOH A . J 5 HOH 43 172 43 HOH HOH A . J 5 HOH 44 173 44 HOH HOH A . J 5 HOH 45 174 45 HOH HOH A . J 5 HOH 46 175 46 HOH HOH A . J 5 HOH 47 176 47 HOH HOH A . J 5 HOH 48 177 48 HOH HOH A . J 5 HOH 49 178 49 HOH HOH A . J 5 HOH 50 179 50 HOH HOH A . J 5 HOH 51 180 51 HOH HOH A . J 5 HOH 52 181 52 HOH HOH A . J 5 HOH 53 182 53 HOH HOH A . J 5 HOH 54 183 54 HOH HOH A . J 5 HOH 55 184 55 HOH HOH A . J 5 HOH 56 185 56 HOH HOH A . J 5 HOH 57 186 57 HOH HOH A . J 5 HOH 58 187 58 HOH HOH A . J 5 HOH 59 188 59 HOH HOH A . J 5 HOH 60 189 60 HOH HOH A . J 5 HOH 61 190 61 HOH HOH A . J 5 HOH 62 191 62 HOH HOH A . J 5 HOH 63 192 63 HOH HOH A . J 5 HOH 64 193 64 HOH HOH A . J 5 HOH 65 194 65 HOH HOH A . J 5 HOH 66 195 66 HOH HOH A . J 5 HOH 67 196 67 HOH HOH A . J 5 HOH 68 197 68 HOH HOH A . J 5 HOH 69 198 69 HOH HOH A . J 5 HOH 70 199 70 HOH HOH A . J 5 HOH 71 200 71 HOH HOH A . J 5 HOH 72 201 72 HOH HOH A . J 5 HOH 73 202 73 HOH HOH A . J 5 HOH 74 203 74 HOH HOH A . J 5 HOH 75 204 75 HOH HOH A . J 5 HOH 76 205 76 HOH HOH A . J 5 HOH 77 206 77 HOH HOH A . J 5 HOH 78 207 78 HOH HOH A . J 5 HOH 79 208 79 HOH HOH A . J 5 HOH 80 209 80 HOH HOH A . J 5 HOH 81 210 81 HOH HOH A . J 5 HOH 82 211 82 HOH HOH A . J 5 HOH 83 212 83 HOH HOH A . J 5 HOH 84 213 84 HOH HOH A . J 5 HOH 85 214 85 HOH HOH A . J 5 HOH 86 215 86 HOH HOH A . J 5 HOH 87 216 87 HOH HOH A . J 5 HOH 88 217 88 HOH HOH A . J 5 HOH 89 218 89 HOH HOH A . J 5 HOH 90 219 90 HOH HOH A . J 5 HOH 91 220 91 HOH HOH A . J 5 HOH 92 221 92 HOH HOH A . J 5 HOH 93 222 93 HOH HOH A . J 5 HOH 94 223 94 HOH HOH A . J 5 HOH 95 224 95 HOH HOH A . J 5 HOH 96 225 96 HOH HOH A . J 5 HOH 97 226 97 HOH HOH A . J 5 HOH 98 227 98 HOH HOH A . J 5 HOH 99 228 99 HOH HOH A . J 5 HOH 100 229 100 HOH HOH A . J 5 HOH 101 230 101 HOH HOH A . J 5 HOH 102 231 102 HOH HOH A . J 5 HOH 103 232 103 HOH HOH A . J 5 HOH 104 233 104 HOH HOH A . J 5 HOH 105 234 105 HOH HOH A . J 5 HOH 106 235 106 HOH HOH A . J 5 HOH 107 236 107 HOH HOH A . J 5 HOH 108 237 108 HOH HOH A . J 5 HOH 109 238 109 HOH HOH A . J 5 HOH 110 239 110 HOH HOH A . J 5 HOH 111 240 111 HOH HOH A . J 5 HOH 112 241 112 HOH HOH A . J 5 HOH 113 242 113 HOH HOH A . J 5 HOH 114 243 114 HOH HOH A . J 5 HOH 115 244 115 HOH HOH A . J 5 HOH 116 245 116 HOH HOH A . J 5 HOH 117 246 117 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_phasing_MR.entry_id 3LKY _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 44.680 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 25.170 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 25.170 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHASER 2.1.3 'Wed Mar 5 18:25:34 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 HKL-3000 . ? ? ? ? 'data collection' ? ? ? 7 HKL-3000 . ? ? ? ? 'data reduction' ? ? ? 8 HKL-3000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH1 A ARG 80 ? ? 124.98 120.30 4.68 0.50 N 2 1 NE A ARG 80 ? ? CZ A ARG 80 ? ? NH2 A ARG 80 ? ? 115.86 120.30 -4.44 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 GOL C1 C N N 133 GOL O1 O N N 134 GOL C2 C N N 135 GOL O2 O N N 136 GOL C3 C N N 137 GOL O3 O N N 138 GOL H11 H N N 139 GOL H12 H N N 140 GOL HO1 H N N 141 GOL H2 H N N 142 GOL HO2 H N N 143 GOL H31 H N N 144 GOL H32 H N N 145 GOL HO3 H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 SO4 S S N N 314 SO4 O1 O N N 315 SO4 O2 O N N 316 SO4 O3 O N N 317 SO4 O4 O N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TYR N N N N 336 TYR CA C N S 337 TYR C C N N 338 TYR O O N N 339 TYR CB C N N 340 TYR CG C Y N 341 TYR CD1 C Y N 342 TYR CD2 C Y N 343 TYR CE1 C Y N 344 TYR CE2 C Y N 345 TYR CZ C Y N 346 TYR OH O N N 347 TYR OXT O N N 348 TYR H H N N 349 TYR H2 H N N 350 TYR HA H N N 351 TYR HB2 H N N 352 TYR HB3 H N N 353 TYR HD1 H N N 354 TYR HD2 H N N 355 TYR HE1 H N N 356 TYR HE2 H N N 357 TYR HH H N N 358 TYR HXT H N N 359 VAL N N N N 360 VAL CA C N S 361 VAL C C N N 362 VAL O O N N 363 VAL CB C N N 364 VAL CG1 C N N 365 VAL CG2 C N N 366 VAL OXT O N N 367 VAL H H N N 368 VAL H2 H N N 369 VAL HA H N N 370 VAL HB H N N 371 VAL HG11 H N N 372 VAL HG12 H N N 373 VAL HG13 H N N 374 VAL HG21 H N N 375 VAL HG22 H N N 376 VAL HG23 H N N 377 VAL HXT H N N 378 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 GOL C1 O1 sing N N 125 GOL C1 C2 sing N N 126 GOL C1 H11 sing N N 127 GOL C1 H12 sing N N 128 GOL O1 HO1 sing N N 129 GOL C2 O2 sing N N 130 GOL C2 C3 sing N N 131 GOL C2 H2 sing N N 132 GOL O2 HO2 sing N N 133 GOL C3 O3 sing N N 134 GOL C3 H31 sing N N 135 GOL C3 H32 sing N N 136 GOL O3 HO3 sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 SO4 S O1 doub N N 299 SO4 S O2 doub N N 300 SO4 S O3 sing N N 301 SO4 S O4 sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 1,2-ETHANEDIOL EDO 4 'SULFATE ION' SO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2HYR _pdbx_initial_refinement_model.details ? #