HEADER TRANSFERASE 28-JAN-10 3LL3 TITLE THE CRYSTAL STRUCTURE OF LIGAND BOUND XYLULOSE KINASE FROM TITLE 2 LACTOBACILLUS ACIDOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS ACIDOPHILUS; SOURCE 3 ORGANISM_TAXID: 1579; SOURCE 4 STRAIN: NCFM; SOURCE 5 GENE: LBA0354; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS XYLULOSE KINASE, 11120E1, NYSGX, ATP, ADP, XYLULOSE, KINASE, KEYWDS 2 TRANSFERASE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 4 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 4 22-NOV-23 3LL3 1 REMARK REVDAT 3 06-SEP-23 3LL3 1 REMARK REVDAT 2 10-FEB-21 3LL3 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 23-MAR-10 3LL3 0 JRNL AUTH Z.ZHANG,S.K.BURLEY,S.SWAMINATHAN JRNL TITL THE CRYSTAL STRUCTURE OF XYLULOSE KINASE FROM LACTOBACILLUS JRNL TITL 2 ACIDOPHILUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 79750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1441 - 6.0697 0.94 2837 156 0.1789 0.1824 REMARK 3 2 6.0697 - 4.8213 0.99 2987 159 0.1547 0.1601 REMARK 3 3 4.8213 - 4.2129 0.98 3001 164 0.1358 0.1562 REMARK 3 4 4.2129 - 3.8282 0.95 2839 158 0.1558 0.1797 REMARK 3 5 3.8282 - 3.5541 0.97 2949 153 0.1704 0.2034 REMARK 3 6 3.5541 - 3.3447 0.97 2908 184 0.1835 0.2200 REMARK 3 7 3.3447 - 3.1773 0.97 2896 164 0.1913 0.2335 REMARK 3 8 3.1773 - 3.0390 0.97 2919 146 0.2105 0.2655 REMARK 3 9 3.0390 - 2.9221 0.96 2912 149 0.2066 0.2192 REMARK 3 10 2.9221 - 2.8213 0.95 2869 154 0.2096 0.2412 REMARK 3 11 2.8213 - 2.7331 0.94 2866 146 0.2104 0.2529 REMARK 3 12 2.7331 - 2.6550 0.94 2818 147 0.2092 0.2709 REMARK 3 13 2.6550 - 2.5852 0.93 2827 144 0.2203 0.2668 REMARK 3 14 2.5852 - 2.5221 0.92 2708 149 0.2266 0.2617 REMARK 3 15 2.5221 - 2.4648 0.90 2766 139 0.2157 0.2544 REMARK 3 16 2.4648 - 2.4123 0.89 2694 131 0.2051 0.2592 REMARK 3 17 2.4123 - 2.3641 0.87 2642 141 0.2036 0.2592 REMARK 3 18 2.3641 - 2.3195 0.87 2596 148 0.2148 0.2844 REMARK 3 19 2.3195 - 2.2781 0.83 2549 126 0.2308 0.2626 REMARK 3 20 2.2781 - 2.2395 0.86 2576 124 0.2647 0.2786 REMARK 3 21 2.2395 - 2.2033 0.82 2499 127 0.2418 0.2473 REMARK 3 22 2.2033 - 2.1694 0.84 2564 120 0.2327 0.2855 REMARK 3 23 2.1694 - 2.1375 0.85 2561 121 0.2392 0.2459 REMARK 3 24 2.1375 - 2.1074 0.83 2569 128 0.2435 0.3000 REMARK 3 25 2.1074 - 2.0790 0.86 2508 133 0.2574 0.2963 REMARK 3 26 2.0790 - 2.0520 0.83 2535 127 0.2666 0.3497 REMARK 3 27 2.0520 - 2.0263 0.81 2405 133 0.2839 0.3138 REMARK 3 28 2.0263 - 2.0019 0.65 1988 91 0.2839 0.3429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 51.71 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.20080 REMARK 3 B22 (A**2) : 5.71330 REMARK 3 B33 (A**2) : 1.48740 REMARK 3 B12 (A**2) : -1.92900 REMARK 3 B13 (A**2) : -4.55300 REMARK 3 B23 (A**2) : 10.74480 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7859 REMARK 3 ANGLE : 1.152 10665 REMARK 3 CHIRALITY : 0.075 1201 REMARK 3 PLANARITY : 0.006 1345 REMARK 3 DIHEDRAL : 18.845 2921 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LL3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GBT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.5, 25% W/V POLYETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 ASN A 492 REMARK 465 ILE A 493 REMARK 465 ASN A 494 REMARK 465 GLU A 495 REMARK 465 GLY A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 HIS A 502 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 ASP B 310 REMARK 465 ASN B 492 REMARK 465 ILE B 493 REMARK 465 ASN B 494 REMARK 465 GLU B 495 REMARK 465 GLY B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 465 HIS B 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 390 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 12 -27.79 66.91 REMARK 500 ALA A 43 85.80 -156.50 REMARK 500 GLN A 77 155.01 -48.90 REMARK 500 ASP A 284 -168.44 -168.73 REMARK 500 PHE A 309 -91.06 -116.58 REMARK 500 ALA A 311 21.10 -74.78 REMARK 500 ARG A 342 -117.78 -88.21 REMARK 500 GLN A 362 -169.30 -102.19 REMARK 500 LYS A 387 -112.74 54.18 REMARK 500 GLN A 444 -68.53 -108.33 REMARK 500 ASP A 456 -70.75 -107.48 REMARK 500 PHE A 490 2.75 -66.02 REMARK 500 THR B 12 -26.97 68.17 REMARK 500 LYS B 141 -8.89 -148.02 REMARK 500 THR B 164 -20.03 -141.66 REMARK 500 ASP B 312 57.18 37.44 REMARK 500 ARG B 342 -113.24 -93.03 REMARK 500 GLN B 444 -75.68 -105.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 1760 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXP A 3264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XUL A 7778 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 1761 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DXP B 3265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GBT RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-11200E RELATED DB: TARGETDB DBREF 3LL3 A 2 494 UNP Q5FM28 Q5FM28_LACAC 2 494 DBREF 3LL3 B 2 494 UNP Q5FM28 Q5FM28_LACAC 2 494 SEQADV 3LL3 MSE A -1 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 SER A 0 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 LEU A 1 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 GLU A 495 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 GLY A 496 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 497 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 498 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 499 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 500 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 501 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS A 502 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 MSE B -1 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 SER B 0 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 LEU B 1 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 GLU B 495 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 GLY B 496 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 497 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 498 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 499 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 500 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 501 UNP Q5FM28 EXPRESSION TAG SEQADV 3LL3 HIS B 502 UNP Q5FM28 EXPRESSION TAG SEQRES 1 A 504 MSE SER LEU LYS TYR ILE ILE GLY MSE ASP VAL GLY THR SEQRES 2 A 504 THR ALA THR LYS GLY VAL LEU TYR ASP ILE ASN GLY LYS SEQRES 3 A 504 ALA VAL ALA SER VAL SER LYS GLY TYR PRO LEU ILE GLN SEQRES 4 A 504 THR LYS VAL GLY GLN ALA GLU GLU ASP PRO LYS LEU ILE SEQRES 5 A 504 PHE ASP ALA VAL GLN GLU ILE ILE PHE ASP LEU THR GLN SEQRES 6 A 504 LYS ILE ASP GLY LYS ILE ALA ALA ILE SER TRP SER SER SEQRES 7 A 504 GLN MSE HIS SER LEU ILE GLY LEU GLY SER ASP ASP GLU SEQRES 8 A 504 LEU LEU THR ASN SER ILE THR TRP ALA ASP ASN CYS ALA SEQRES 9 A 504 LYS SER ILE VAL GLN ASP ALA LYS ASN ARG GLY PHE ALA SEQRES 10 A 504 GLN GLN ILE TYR ARG LYS THR GLY MSE PRO MSE HIS PRO SEQRES 11 A 504 MSE ALA PRO ILE TYR LYS LEU LEU TRP LEU LYS ASN LYS SEQRES 12 A 504 LYS THR GLU VAL PHE SER GLN ALA GLN LYS TRP ILE GLY SEQRES 13 A 504 ILE LYS GLU TYR ILE ILE PHE ARG LEU THR GLY LYS LEU SEQRES 14 A 504 VAL THR ASP THR THR MSE ALA ALA GLY THR GLY ILE LEU SEQRES 15 A 504 ASN LEU LYS THR LEU THR TRP ASP GLN GLU LEU LEU ASP SEQRES 16 A 504 ILE LEU LYS ILE LYS LYS GLU GLN LEU PRO LYS ILE ALA SEQRES 17 A 504 GLN PRO THR LYS VAL ILE PHE PRO ILE LYS THR GLU TYR SEQRES 18 A 504 VAL LYS LYS LEU GLY ILE ASP SER ASP THR LYS ILE ILE SEQRES 19 A 504 LEU GLY ALA SER ASP GLY TYR LEU SER THR ILE GLY VAL SEQRES 20 A 504 ASN ALA ILE ASP SER ASP HIS CYS ALA LEU ASN VAL GLY SEQRES 21 A 504 THR SER GLY ALA ILE ARG THR ILE VAL ASP GLN PRO LYS SEQRES 22 A 504 ILE ASP PRO SER ALA SER TYR PHE CYS TYR PRO ALA ASP SEQRES 23 A 504 LYS THR HIS TYR LEU LEU GLY GLY PRO VAL ASN ASN GLY SEQRES 24 A 504 GLY ILE VAL PHE ASN TRP ALA ARG GLN THR LEU PHE ASP SEQRES 25 A 504 ALA ASP GLU THR PRO GLN ASP PHE LEU ASP VAL ALA GLN SEQRES 26 A 504 THR ALA PRO ALA GLY SER ARG ASN LEU ILE PHE LEU PRO SEQRES 27 A 504 TYR LEU GLY GLY GLU ARG ALA PRO ILE TRP ASP ALA ASN SEQRES 28 A 504 ALA ARG GLY SER PHE VAL GLY LEU THR ARG MSE HIS GLN SEQRES 29 A 504 LYS PRO GLU MSE ALA ARG ALA VAL ILE GLU GLY ILE ILE SEQRES 30 A 504 PHE ASN LEU TYR ASP ALA ALA SER ASN LEU ILE LYS ASN SEQRES 31 A 504 THR LYS LYS PRO VAL ALA ILE ASN ALA THR GLY GLY PHE SEQRES 32 A 504 LEU LYS SER ASP PHE VAL ARG GLN LEU CYS ALA ASN ILE SEQRES 33 A 504 PHE ASN VAL PRO ILE VAL THR MSE LYS GLU GLN GLN SER SEQRES 34 A 504 GLY THR LEU ALA ALA MSE PHE LEU ALA ARG GLN ALA LEU SEQRES 35 A 504 GLY LEU ASN GLN ASP LEU SER GLU ILE GLY GLN PHE ALA SEQRES 36 A 504 GLN ALA ASP LYS VAL TYR PHE PRO ASN PRO LYS GLU ALA SEQRES 37 A 504 ALA THR TYR GLN LYS LEU PHE PRO LEU TYR CYS GLU ILE SEQRES 38 A 504 ARG ASN ALA LEU ALA ALA SER TYR GLY LYS PHE SER ASN SEQRES 39 A 504 ILE ASN GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 504 MSE SER LEU LYS TYR ILE ILE GLY MSE ASP VAL GLY THR SEQRES 2 B 504 THR ALA THR LYS GLY VAL LEU TYR ASP ILE ASN GLY LYS SEQRES 3 B 504 ALA VAL ALA SER VAL SER LYS GLY TYR PRO LEU ILE GLN SEQRES 4 B 504 THR LYS VAL GLY GLN ALA GLU GLU ASP PRO LYS LEU ILE SEQRES 5 B 504 PHE ASP ALA VAL GLN GLU ILE ILE PHE ASP LEU THR GLN SEQRES 6 B 504 LYS ILE ASP GLY LYS ILE ALA ALA ILE SER TRP SER SER SEQRES 7 B 504 GLN MSE HIS SER LEU ILE GLY LEU GLY SER ASP ASP GLU SEQRES 8 B 504 LEU LEU THR ASN SER ILE THR TRP ALA ASP ASN CYS ALA SEQRES 9 B 504 LYS SER ILE VAL GLN ASP ALA LYS ASN ARG GLY PHE ALA SEQRES 10 B 504 GLN GLN ILE TYR ARG LYS THR GLY MSE PRO MSE HIS PRO SEQRES 11 B 504 MSE ALA PRO ILE TYR LYS LEU LEU TRP LEU LYS ASN LYS SEQRES 12 B 504 LYS THR GLU VAL PHE SER GLN ALA GLN LYS TRP ILE GLY SEQRES 13 B 504 ILE LYS GLU TYR ILE ILE PHE ARG LEU THR GLY LYS LEU SEQRES 14 B 504 VAL THR ASP THR THR MSE ALA ALA GLY THR GLY ILE LEU SEQRES 15 B 504 ASN LEU LYS THR LEU THR TRP ASP GLN GLU LEU LEU ASP SEQRES 16 B 504 ILE LEU LYS ILE LYS LYS GLU GLN LEU PRO LYS ILE ALA SEQRES 17 B 504 GLN PRO THR LYS VAL ILE PHE PRO ILE LYS THR GLU TYR SEQRES 18 B 504 VAL LYS LYS LEU GLY ILE ASP SER ASP THR LYS ILE ILE SEQRES 19 B 504 LEU GLY ALA SER ASP GLY TYR LEU SER THR ILE GLY VAL SEQRES 20 B 504 ASN ALA ILE ASP SER ASP HIS CYS ALA LEU ASN VAL GLY SEQRES 21 B 504 THR SER GLY ALA ILE ARG THR ILE VAL ASP GLN PRO LYS SEQRES 22 B 504 ILE ASP PRO SER ALA SER TYR PHE CYS TYR PRO ALA ASP SEQRES 23 B 504 LYS THR HIS TYR LEU LEU GLY GLY PRO VAL ASN ASN GLY SEQRES 24 B 504 GLY ILE VAL PHE ASN TRP ALA ARG GLN THR LEU PHE ASP SEQRES 25 B 504 ALA ASP GLU THR PRO GLN ASP PHE LEU ASP VAL ALA GLN SEQRES 26 B 504 THR ALA PRO ALA GLY SER ARG ASN LEU ILE PHE LEU PRO SEQRES 27 B 504 TYR LEU GLY GLY GLU ARG ALA PRO ILE TRP ASP ALA ASN SEQRES 28 B 504 ALA ARG GLY SER PHE VAL GLY LEU THR ARG MSE HIS GLN SEQRES 29 B 504 LYS PRO GLU MSE ALA ARG ALA VAL ILE GLU GLY ILE ILE SEQRES 30 B 504 PHE ASN LEU TYR ASP ALA ALA SER ASN LEU ILE LYS ASN SEQRES 31 B 504 THR LYS LYS PRO VAL ALA ILE ASN ALA THR GLY GLY PHE SEQRES 32 B 504 LEU LYS SER ASP PHE VAL ARG GLN LEU CYS ALA ASN ILE SEQRES 33 B 504 PHE ASN VAL PRO ILE VAL THR MSE LYS GLU GLN GLN SER SEQRES 34 B 504 GLY THR LEU ALA ALA MSE PHE LEU ALA ARG GLN ALA LEU SEQRES 35 B 504 GLY LEU ASN GLN ASP LEU SER GLU ILE GLY GLN PHE ALA SEQRES 36 B 504 GLN ALA ASP LYS VAL TYR PHE PRO ASN PRO LYS GLU ALA SEQRES 37 B 504 ALA THR TYR GLN LYS LEU PHE PRO LEU TYR CYS GLU ILE SEQRES 38 B 504 ARG ASN ALA LEU ALA ALA SER TYR GLY LYS PHE SER ASN SEQRES 39 B 504 ILE ASN GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3LL3 MSE A 7 MET SELENOMETHIONINE MODRES 3LL3 MSE A 78 MET SELENOMETHIONINE MODRES 3LL3 MSE A 124 MET SELENOMETHIONINE MODRES 3LL3 MSE A 126 MET SELENOMETHIONINE MODRES 3LL3 MSE A 129 MET SELENOMETHIONINE MODRES 3LL3 MSE A 173 MET SELENOMETHIONINE MODRES 3LL3 MSE A 360 MET SELENOMETHIONINE MODRES 3LL3 MSE A 366 MET SELENOMETHIONINE MODRES 3LL3 MSE A 422 MET SELENOMETHIONINE MODRES 3LL3 MSE A 433 MET SELENOMETHIONINE MODRES 3LL3 MSE B 7 MET SELENOMETHIONINE MODRES 3LL3 MSE B 78 MET SELENOMETHIONINE MODRES 3LL3 MSE B 124 MET SELENOMETHIONINE MODRES 3LL3 MSE B 126 MET SELENOMETHIONINE MODRES 3LL3 MSE B 129 MET SELENOMETHIONINE MODRES 3LL3 MSE B 173 MET SELENOMETHIONINE MODRES 3LL3 MSE B 360 MET SELENOMETHIONINE MODRES 3LL3 MSE B 366 MET SELENOMETHIONINE MODRES 3LL3 MSE B 422 MET SELENOMETHIONINE MODRES 3LL3 MSE B 433 MET SELENOMETHIONINE HET MSE A 7 8 HET MSE A 78 8 HET MSE A 124 8 HET MSE A 126 8 HET MSE A 129 8 HET MSE A 173 8 HET MSE A 360 8 HET MSE A 366 8 HET MSE A 422 8 HET MSE A 433 8 HET MSE B 7 8 HET MSE B 78 8 HET MSE B 124 8 HET MSE B 126 8 HET MSE B 129 8 HET MSE B 173 8 HET MSE B 360 8 HET MSE B 366 8 HET MSE B 422 8 HET MSE B 433 8 HET ATP A1760 31 HET DXP A3264 13 HET XUL A7778 10 HET ADP B1761 27 HET DXP B3265 13 HETNAM MSE SELENOMETHIONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM DXP 1-DEOXY-D-XYLULOSE-5-PHOSPHATE HETNAM XUL D-XYLULOSE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 DXP 2(C5 H11 O7 P) FORMUL 5 XUL C5 H10 O5 FORMUL 6 ADP C10 H15 N5 O10 P2 FORMUL 8 HOH *627(H2 O) HELIX 1 1 ASP A 46 LYS A 64 1 19 HELIX 2 2 ALA A 102 ARG A 112 1 11 HELIX 3 3 GLY A 113 GLY A 123 1 11 HELIX 4 4 ALA A 130 LYS A 142 1 13 HELIX 5 5 LYS A 142 ALA A 149 1 8 HELIX 6 6 GLY A 154 GLY A 165 1 12 HELIX 7 7 THR A 171 ALA A 175 1 5 HELIX 8 8 ASP A 188 LYS A 196 1 9 HELIX 9 9 LYS A 198 LEU A 202 5 5 HELIX 10 10 LYS A 216 GLY A 224 1 9 HELIX 11 11 ASP A 237 GLY A 244 1 8 HELIX 12 12 GLY A 297 PHE A 309 1 13 HELIX 13 13 THR A 314 THR A 324 1 11 HELIX 14 14 GLY A 328 LEU A 332 5 5 HELIX 15 15 GLN A 362 LYS A 387 1 26 HELIX 16 16 GLY A 399 LYS A 403 5 5 HELIX 17 17 SER A 404 ASN A 416 1 13 HELIX 18 18 GLN A 426 LEU A 440 1 15 HELIX 19 19 ASP A 445 PHE A 452 5 8 HELIX 20 20 ASN A 462 ALA A 484 1 23 HELIX 21 21 ALA A 485 SER A 491 5 7 HELIX 22 22 ASP B 46 GLN B 63 1 18 HELIX 23 23 ALA B 102 ARG B 112 1 11 HELIX 24 24 GLY B 113 GLY B 123 1 11 HELIX 25 25 ALA B 130 LYS B 142 1 13 HELIX 26 26 LYS B 142 ALA B 149 1 8 HELIX 27 27 GLY B 154 GLY B 165 1 12 HELIX 28 28 THR B 171 ALA B 175 1 5 HELIX 29 29 ASP B 188 LYS B 196 1 9 HELIX 30 30 LYS B 198 LEU B 202 5 5 HELIX 31 31 LYS B 216 GLY B 224 1 9 HELIX 32 32 ASP B 237 GLY B 244 1 8 HELIX 33 33 GLY B 297 PHE B 309 1 13 HELIX 34 34 THR B 314 GLN B 323 1 10 HELIX 35 35 GLY B 328 LEU B 332 5 5 HELIX 36 36 GLN B 362 LYS B 387 1 26 HELIX 37 37 GLY B 399 LYS B 403 5 5 HELIX 38 38 SER B 404 ASN B 416 1 13 HELIX 39 39 GLN B 426 LEU B 440 1 15 HELIX 40 40 ASP B 445 PHE B 452 5 8 HELIX 41 41 ASN B 462 ALA B 484 1 23 HELIX 42 42 SER B 486 SER B 491 5 6 SHEET 1 A 6 ALA A 25 GLY A 32 0 SHEET 2 A 6 ALA A 13 ASP A 20 -1 N LEU A 18 O VAL A 26 SHEET 3 A 6 LYS A 2 VAL A 9 -1 N ILE A 4 O TYR A 19 SHEET 4 A 6 LYS A 68 SER A 76 1 O SER A 75 N VAL A 9 SHEET 5 A 6 LYS A 230 SER A 236 1 O ILE A 232 N ILE A 72 SHEET 6 A 6 VAL A 211 ILE A 212 -1 N ILE A 212 O ILE A 231 SHEET 1 B 2 GLU A 44 GLU A 45 0 SHEET 2 B 2 SER A 94 ILE A 95 -1 O SER A 94 N GLU A 45 SHEET 1 C 2 ILE A 82 LEU A 84 0 SHEET 2 C 2 LYS A 151 ILE A 153 -1 O ILE A 153 N ILE A 82 SHEET 1 D 2 VAL A 168 ASP A 170 0 SHEET 2 D 2 LYS A 204 ALA A 206 1 O LYS A 204 N THR A 169 SHEET 1 E 7 PHE A 279 ASP A 284 0 SHEET 2 E 7 HIS A 287 VAL A 294 -1 O LEU A 289 N TYR A 281 SHEET 3 E 7 GLY A 261 VAL A 267 -1 N GLY A 261 O VAL A 294 SHEET 4 E 7 HIS A 252 VAL A 257 -1 N ALA A 254 O ARG A 264 SHEET 5 E 7 ALA A 394 THR A 398 1 O ASN A 396 N CYS A 253 SHEET 6 E 7 ILE A 419 MSE A 422 1 O VAL A 420 N ILE A 395 SHEET 7 E 7 ALA A 455 TYR A 459 -1 O ASP A 456 N THR A 421 SHEET 1 F 4 ILE A 333 LEU A 335 0 SHEET 2 F 4 GLY A 352 LEU A 357 -1 O VAL A 355 N ILE A 333 SHEET 3 F 4 GLY B 352 LEU B 357 -1 O LEU B 357 N GLY A 352 SHEET 4 F 4 ILE B 333 LEU B 335 -1 N ILE B 333 O VAL B 355 SHEET 1 G 6 ALA B 25 GLY B 32 0 SHEET 2 G 6 ALA B 13 TYR B 19 -1 N LEU B 18 O VAL B 26 SHEET 3 G 6 LYS B 2 VAL B 9 -1 N ILE B 4 O TYR B 19 SHEET 4 G 6 LYS B 68 SER B 76 1 O SER B 73 N ILE B 5 SHEET 5 G 6 LYS B 230 ILE B 232 1 O ILE B 232 N ILE B 72 SHEET 6 G 6 VAL B 211 ILE B 212 -1 N ILE B 212 O ILE B 231 SHEET 1 H 5 ALA B 25 GLY B 32 0 SHEET 2 H 5 ALA B 13 TYR B 19 -1 N LEU B 18 O VAL B 26 SHEET 3 H 5 LYS B 2 VAL B 9 -1 N ILE B 4 O TYR B 19 SHEET 4 H 5 LYS B 68 SER B 76 1 O SER B 73 N ILE B 5 SHEET 5 H 5 ALA B 235 SER B 236 1 O ALA B 235 N TRP B 74 SHEET 1 I 2 GLU B 44 GLU B 45 0 SHEET 2 I 2 SER B 94 ILE B 95 -1 O SER B 94 N GLU B 45 SHEET 1 J 2 ILE B 82 LEU B 84 0 SHEET 2 J 2 LYS B 151 ILE B 153 -1 O ILE B 153 N ILE B 82 SHEET 1 K 2 VAL B 168 ASP B 170 0 SHEET 2 K 2 LYS B 204 ALA B 206 1 O LYS B 204 N THR B 169 SHEET 1 L 7 PHE B 279 ASP B 284 0 SHEET 2 L 7 HIS B 287 VAL B 294 -1 O LEU B 289 N TYR B 281 SHEET 3 L 7 GLY B 261 VAL B 267 -1 N THR B 265 O LEU B 290 SHEET 4 L 7 HIS B 252 VAL B 257 -1 N ALA B 254 O ARG B 264 SHEET 5 L 7 ALA B 394 THR B 398 1 O ASN B 396 N CYS B 253 SHEET 6 L 7 ILE B 419 MSE B 422 1 O VAL B 420 N ALA B 397 SHEET 7 L 7 ALA B 455 TYR B 459 -1 O ASP B 456 N THR B 421 LINK C GLY A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N ASP A 8 1555 1555 1.33 LINK C GLN A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N HIS A 79 1555 1555 1.33 LINK C GLY A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N PRO A 125 1555 1555 1.35 LINK C PRO A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N HIS A 127 1555 1555 1.33 LINK C PRO A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N ALA A 130 1555 1555 1.33 LINK C THR A 172 N MSE A 173 1555 1555 1.33 LINK C MSE A 173 N ALA A 174 1555 1555 1.33 LINK C ARG A 359 N MSE A 360 1555 1555 1.33 LINK C MSE A 360 N HIS A 361 1555 1555 1.33 LINK C GLU A 365 N MSE A 366 1555 1555 1.33 LINK C MSE A 366 N ALA A 367 1555 1555 1.34 LINK C THR A 421 N MSE A 422 1555 1555 1.33 LINK C MSE A 422 N LYS A 423 1555 1555 1.32 LINK C ALA A 432 N MSE A 433 1555 1555 1.34 LINK C MSE A 433 N PHE A 434 1555 1555 1.33 LINK C GLY B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N ASP B 8 1555 1555 1.33 LINK C GLN B 77 N MSE B 78 1555 1555 1.33 LINK C MSE B 78 N HIS B 79 1555 1555 1.33 LINK C GLY B 123 N MSE B 124 1555 1555 1.33 LINK C MSE B 124 N PRO B 125 1555 1555 1.34 LINK C PRO B 125 N MSE B 126 1555 1555 1.33 LINK C MSE B 126 N HIS B 127 1555 1555 1.33 LINK C PRO B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N ALA B 130 1555 1555 1.33 LINK C THR B 172 N MSE B 173 1555 1555 1.33 LINK C MSE B 173 N ALA B 174 1555 1555 1.33 LINK C ARG B 359 N MSE B 360 1555 1555 1.33 LINK C MSE B 360 N HIS B 361 1555 1555 1.33 LINK C GLU B 365 N MSE B 366 1555 1555 1.33 LINK C MSE B 366 N ALA B 367 1555 1555 1.33 LINK C THR B 421 N MSE B 422 1555 1555 1.33 LINK C MSE B 422 N LYS B 423 1555 1555 1.33 LINK C ALA B 432 N MSE B 433 1555 1555 1.33 LINK C MSE B 433 N PHE B 434 1555 1555 1.33 CISPEP 1 PHE A 213 PRO A 214 0 -4.70 CISPEP 2 ALA A 343 PRO A 344 0 0.65 CISPEP 3 PHE B 213 PRO B 214 0 3.09 CISPEP 4 ALA B 343 PRO B 344 0 3.03 SITE 1 AC1 19 GLY A 258 THR A 259 GLY A 298 ILE A 299 SITE 2 AC1 19 ASN A 302 PRO A 315 GLY A 399 GLY A 400 SITE 3 AC1 19 PHE A 401 HOH A 572 HOH A 581 HOH A 650 SITE 4 AC1 19 HOH A 656 HOH A 703 HOH A 723 HOH A 733 SITE 5 AC1 19 HOH A 760 HOH A 842 HOH A 847 SITE 1 AC2 7 HIS A 127 ASN A 295 GLY A 339 GLU A 341 SITE 2 AC2 7 ARG A 342 ALA A 348 HOH A 669 SITE 1 AC3 7 GLN A 77 MSE A 78 HIS A 79 ASP A 237 SITE 2 AC3 7 PHE A 279 TYR A 281 ARG A 342 SITE 1 AC4 19 GLY B 258 THR B 259 GLY B 298 ILE B 299 SITE 2 AC4 19 PHE B 301 ASN B 302 PRO B 315 LEU B 319 SITE 3 AC4 19 GLY B 400 PHE B 401 LYS B 403 HOH B 506 SITE 4 AC4 19 HOH B 554 HOH B 594 HOH B 655 HOH B 668 SITE 5 AC4 19 HOH B 679 HOH B 684 HOH B 704 SITE 1 AC5 8 HIS B 127 ASN B 295 GLY B 339 GLY B 340 SITE 2 AC5 8 GLU B 341 ARG B 342 ALA B 348 HOH B 602 CRYST1 57.889 73.056 82.872 84.75 86.32 77.95 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017274 -0.003687 -0.000820 0.00000 SCALE2 0.000000 0.013996 -0.001124 0.00000 SCALE3 0.000000 0.000000 0.012131 0.00000