HEADER HYDROLASE 28-JAN-10 3LL4 TITLE STRUCTURE OF THE H13A MUTANT OF YKR043C IN COMPLEX WITH FRUCTOSE-1,6- TITLE 2 BISPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YKR043C; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.3.11; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: YKR043C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TVLIC KEYWDS FRUCTOSE-1, 6-BISPHOSPHATASE, 1, 6-FRUCTOSE DIPHOSPHATE (LINEAR KEYWDS 2 FORM), YKR043C, SACCHAROMYCES CEREVISIAE, METAL-INDEPENDENT, KEYWDS 3 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST KEYWDS 4 CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SINGER,X.XU,H.CUI,A.DONG,P.J.STOGIOS,A.M.EDWARDS,A.JOACHIMIAK, AUTHOR 2 A.SAVCHENKO,A.F.YAKUNIN,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 6 06-SEP-23 3LL4 1 REMARK REVDAT 5 13-OCT-21 3LL4 1 REMARK SEQADV REVDAT 4 13-JUL-11 3LL4 1 VERSN REVDAT 3 01-SEP-10 3LL4 1 JRNL REVDAT 2 23-JUN-10 3LL4 1 HETATM REVDAT 1 09-MAR-10 3LL4 0 JRNL AUTH E.KUZNETSOVA,L.XU,A.SINGER,G.BROWN,A.DONG,R.FLICK,H.CUI, JRNL AUTH 2 M.CUFF,A.JOACHIMIAK,A.SAVCHENKO,A.F.YAKUNIN JRNL TITL STRUCTURE AND ACTIVITY OF THE METAL-INDEPENDENT JRNL TITL 2 FRUCTOSE-1,6-BISPHOSPHATASE YK23 FROM SACCHAROMYCES JRNL TITL 3 CEREVISIAE. JRNL REF J.BIOL.CHEM. V. 285 21049 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20427268 JRNL DOI 10.1074/JBC.M110.118315 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 23890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1270 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1582 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.3670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4208 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 40.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.463 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.290 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4379 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5943 ; 1.554 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 6.175 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 224 ;36.353 ;23.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;16.567 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;15.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3380 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1907 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2961 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.128 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.306 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2688 ; 0.651 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4236 ; 1.137 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1912 ; 1.837 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1707 ; 2.884 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 270 1 REMARK 3 1 B 1 B 270 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2096 ; 0.05 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2096 ; 0.16 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 263 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9244 15.4061 -21.4363 REMARK 3 T TENSOR REMARK 3 T11: -0.0933 T22: -0.0881 REMARK 3 T33: -0.0987 T12: -0.0002 REMARK 3 T13: 0.0055 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.9921 L22: 1.5196 REMARK 3 L33: 1.0405 L12: -0.0848 REMARK 3 L13: -0.2572 L23: -0.3647 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.0081 S13: 0.0378 REMARK 3 S21: 0.0571 S22: 0.0625 S23: -0.0272 REMARK 3 S31: -0.0281 S32: 0.0701 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 263 REMARK 3 ORIGIN FOR THE GROUP (A): -34.8499 13.3262 -21.3798 REMARK 3 T TENSOR REMARK 3 T11: -0.0988 T22: -0.0786 REMARK 3 T33: -0.0928 T12: -0.0034 REMARK 3 T13: -0.0050 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.9020 L22: 1.5495 REMARK 3 L33: 1.0059 L12: -0.1532 REMARK 3 L13: 0.3005 L23: 0.3375 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: -0.0035 S13: -0.0573 REMARK 3 S21: 0.0904 S22: 0.0520 S23: 0.0592 REMARK 3 S31: 0.0222 S32: -0.0637 S33: 0.0061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : VARIMAX HR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25181 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 31.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 21.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3F3K MOLECULE A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESEVOIR OF 0.1M SODIUM HEPES PH7.5, REMARK 280 10% ISOPROPANOL AND 20% PEG4K. 0.03 MG/ML TRYPSIN WAS ADDED TO REMARK 280 THE PROTEIN PRIOR TO CRYSTALLIZATION SETUP. CRYSTALS WERE WASHED REMARK 280 IN WELL SOLUTION, THEN SOAKED IN WELL SOLUTION PLUS 12% GLYCEROL REMARK 280 AND 0.1M FRUCTOSE 1,6 BIS-PHOSPHATE AT ROOM TEMPERATURE FOR 10 REMARK 280 MINUTES PRIOR TO FLASH-FREEZING IN LIQUID N2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.81000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.78400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.01100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.78400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.01100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 GLU A 264 REMARK 465 GLU A 265 REMARK 465 SER A 266 REMARK 465 GLN A 267 REMARK 465 HIS A 268 REMARK 465 GLY A 269 REMARK 465 ASP A 270 REMARK 465 VAL A 271 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLU B 264 REMARK 465 GLU B 265 REMARK 465 SER B 266 REMARK 465 GLN B 267 REMARK 465 HIS B 268 REMARK 465 GLY B 269 REMARK 465 ASP B 270 REMARK 465 VAL B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 167 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 167 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 167 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 52 64.65 39.24 REMARK 500 ALA A 175 -130.88 -150.46 REMARK 500 GLU A 197 -44.63 -136.75 REMARK 500 LYS A 206 65.64 62.50 REMARK 500 SER A 241 -146.94 -154.79 REMARK 500 GLN B 52 62.73 37.98 REMARK 500 SER B 65 151.27 -47.39 REMARK 500 ALA B 175 -131.33 -150.06 REMARK 500 GLU B 197 -44.61 -136.56 REMARK 500 LYS B 206 66.37 62.10 REMARK 500 ASP B 210 104.38 -166.29 REMARK 500 SER B 241 -143.35 -151.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2FP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 2FP B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3F3K RELATED DB: PDB REMARK 900 RELATED ID: 3LG2 RELATED DB: PDB REMARK 900 RELATED ID: APC7730 RELATED DB: TARGETDB DBREF 3LL4 A 1 271 UNP P36136 YK23_YEAST 1 271 DBREF 3LL4 B 1 271 UNP P36136 YK23_YEAST 1 271 SEQADV 3LL4 MET A -20 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY A -19 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER A -18 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER A -17 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -16 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -15 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -14 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -13 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -12 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS A -11 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER A -10 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER A -9 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY A -8 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ARG A -7 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLU A -6 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ASN A -5 UNP P36136 EXPRESSION TAG SEQADV 3LL4 LEU A -4 UNP P36136 EXPRESSION TAG SEQADV 3LL4 TYR A -3 UNP P36136 EXPRESSION TAG SEQADV 3LL4 PHE A -2 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLN A -1 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY A 0 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ALA A 13 UNP P36136 HIS 13 ENGINEERED MUTATION SEQADV 3LL4 MET B -20 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY B -19 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER B -18 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER B -17 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -16 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -15 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -14 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -13 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -12 UNP P36136 EXPRESSION TAG SEQADV 3LL4 HIS B -11 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER B -10 UNP P36136 EXPRESSION TAG SEQADV 3LL4 SER B -9 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY B -8 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ARG B -7 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLU B -6 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ASN B -5 UNP P36136 EXPRESSION TAG SEQADV 3LL4 LEU B -4 UNP P36136 EXPRESSION TAG SEQADV 3LL4 TYR B -3 UNP P36136 EXPRESSION TAG SEQADV 3LL4 PHE B -2 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLN B -1 UNP P36136 EXPRESSION TAG SEQADV 3LL4 GLY B 0 UNP P36136 EXPRESSION TAG SEQADV 3LL4 ALA B 13 UNP P36136 HIS 13 ENGINEERED MUTATION SEQRES 1 A 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 292 ARG GLU ASN LEU TYR PHE GLN GLY MET PRO SER LEU THR SEQRES 3 A 292 PRO ARG CYS ILE ILE VAL ARG ALA GLY GLN THR GLU TRP SEQRES 4 A 292 SER LYS SER GLY GLN TYR THR GLY LEU THR ASP LEU PRO SEQRES 5 A 292 LEU THR PRO TYR GLY GLU GLY GLN MET LEU ARG THR GLY SEQRES 6 A 292 GLU SER VAL PHE ARG ASN ASN GLN PHE LEU ASN PRO ASP SEQRES 7 A 292 ASN ILE THR TYR ILE PHE THR SER PRO ARG LEU ARG ALA SEQRES 8 A 292 ARG GLN THR VAL ASP LEU VAL LEU LYS PRO LEU SER ASP SEQRES 9 A 292 GLU GLN ARG ALA LYS ILE ARG VAL VAL VAL ASP ASP ASP SEQRES 10 A 292 LEU ARG GLU TRP GLU TYR GLY ASP TYR GLU GLY MET LEU SEQRES 11 A 292 THR ARG GLU ILE ILE GLU LEU ARG LYS SER ARG GLY LEU SEQRES 12 A 292 ASP LYS GLU ARG PRO TRP ASN ILE TRP ARG ASP GLY CYS SEQRES 13 A 292 GLU ASN GLY GLU THR THR GLN GLN ILE GLY LEU ARG LEU SEQRES 14 A 292 SER ARG ALA ILE ALA ARG ILE GLN ASN LEU HIS ARG LYS SEQRES 15 A 292 HIS GLN SER GLU GLY ARG ALA SER ASP ILE MET VAL PHE SEQRES 16 A 292 ALA HIS GLY HIS ALA LEU ARG TYR PHE ALA ALA ILE TRP SEQRES 17 A 292 PHE GLY LEU GLY VAL GLN LYS LYS CYS GLU THR ILE GLU SEQRES 18 A 292 GLU ILE GLN ASN VAL LYS SER TYR ASP ASP ASP THR VAL SEQRES 19 A 292 PRO TYR VAL LYS LEU GLU SER TYR ARG HIS LEU VAL ASP SEQRES 20 A 292 ASN PRO CYS PHE LEU LEU ASP ALA GLY GLY ILE GLY VAL SEQRES 21 A 292 LEU SER TYR ALA HIS HIS ASN ILE ASP GLU PRO ALA LEU SEQRES 22 A 292 GLU LEU ALA GLY PRO PHE VAL SER PRO PRO GLU GLU GLU SEQRES 23 A 292 SER GLN HIS GLY ASP VAL SEQRES 1 B 292 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 292 ARG GLU ASN LEU TYR PHE GLN GLY MET PRO SER LEU THR SEQRES 3 B 292 PRO ARG CYS ILE ILE VAL ARG ALA GLY GLN THR GLU TRP SEQRES 4 B 292 SER LYS SER GLY GLN TYR THR GLY LEU THR ASP LEU PRO SEQRES 5 B 292 LEU THR PRO TYR GLY GLU GLY GLN MET LEU ARG THR GLY SEQRES 6 B 292 GLU SER VAL PHE ARG ASN ASN GLN PHE LEU ASN PRO ASP SEQRES 7 B 292 ASN ILE THR TYR ILE PHE THR SER PRO ARG LEU ARG ALA SEQRES 8 B 292 ARG GLN THR VAL ASP LEU VAL LEU LYS PRO LEU SER ASP SEQRES 9 B 292 GLU GLN ARG ALA LYS ILE ARG VAL VAL VAL ASP ASP ASP SEQRES 10 B 292 LEU ARG GLU TRP GLU TYR GLY ASP TYR GLU GLY MET LEU SEQRES 11 B 292 THR ARG GLU ILE ILE GLU LEU ARG LYS SER ARG GLY LEU SEQRES 12 B 292 ASP LYS GLU ARG PRO TRP ASN ILE TRP ARG ASP GLY CYS SEQRES 13 B 292 GLU ASN GLY GLU THR THR GLN GLN ILE GLY LEU ARG LEU SEQRES 14 B 292 SER ARG ALA ILE ALA ARG ILE GLN ASN LEU HIS ARG LYS SEQRES 15 B 292 HIS GLN SER GLU GLY ARG ALA SER ASP ILE MET VAL PHE SEQRES 16 B 292 ALA HIS GLY HIS ALA LEU ARG TYR PHE ALA ALA ILE TRP SEQRES 17 B 292 PHE GLY LEU GLY VAL GLN LYS LYS CYS GLU THR ILE GLU SEQRES 18 B 292 GLU ILE GLN ASN VAL LYS SER TYR ASP ASP ASP THR VAL SEQRES 19 B 292 PRO TYR VAL LYS LEU GLU SER TYR ARG HIS LEU VAL ASP SEQRES 20 B 292 ASN PRO CYS PHE LEU LEU ASP ALA GLY GLY ILE GLY VAL SEQRES 21 B 292 LEU SER TYR ALA HIS HIS ASN ILE ASP GLU PRO ALA LEU SEQRES 22 B 292 GLU LEU ALA GLY PRO PHE VAL SER PRO PRO GLU GLU GLU SEQRES 23 B 292 SER GLN HIS GLY ASP VAL HET 2FP A 301 20 HET 2FP B 301 20 HETNAM 2FP 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM) FORMUL 3 2FP 2(C6 H14 O12 P2) FORMUL 5 HOH *57(H2 O) HELIX 1 1 THR A 16 SER A 21 1 6 HELIX 2 2 THR A 33 ARG A 49 1 17 HELIX 3 3 ASN A 55 ASP A 57 5 3 HELIX 4 4 ARG A 67 LYS A 79 1 13 HELIX 5 5 SER A 82 LYS A 88 1 7 HELIX 6 6 ASP A 95 ARG A 98 5 4 HELIX 7 7 TYR A 102 GLU A 106 5 5 HELIX 8 8 LEU A 109 ARG A 120 1 12 HELIX 9 9 ASN A 129 GLY A 134 1 6 HELIX 10 10 THR A 140 GLU A 165 1 26 HELIX 11 11 HIS A 176 PHE A 188 1 13 HELIX 12 12 THR A 198 GLN A 203 1 6 HELIX 13 13 THR B 16 SER B 21 1 6 HELIX 14 14 THR B 33 ARG B 49 1 17 HELIX 15 15 ASN B 55 ASP B 57 5 3 HELIX 16 16 ARG B 67 LYS B 79 1 13 HELIX 17 17 SER B 82 LYS B 88 1 7 HELIX 18 18 ASP B 95 ARG B 98 5 4 HELIX 19 19 TYR B 102 GLU B 106 5 5 HELIX 20 20 LEU B 109 ARG B 120 1 12 HELIX 21 21 ASN B 129 GLY B 134 1 6 HELIX 22 22 THR B 140 GLU B 165 1 26 HELIX 23 23 HIS B 176 PHE B 188 1 13 HELIX 24 24 THR B 198 GLN B 203 1 6 HELIX 25 25 HIS B 244 ASN B 246 5 3 SHEET 1 A 7 ARG A 90 VAL A 93 0 SHEET 2 A 7 ILE A 59 THR A 64 1 N ILE A 62 O VAL A 92 SHEET 3 A 7 ASP A 170 ALA A 175 1 O MET A 172 N PHE A 63 SHEET 4 A 7 ARG A 7 ARG A 12 1 N ILE A 9 O ILE A 171 SHEET 5 A 7 ILE A 237 TYR A 242 -1 O LEU A 240 N CYS A 8 SHEET 6 A 7 PRO A 250 GLU A 253 -1 O ALA A 251 N SER A 241 SHEET 7 A 7 PHE B 230 LEU B 231 1 O LEU B 231 N LEU A 252 SHEET 1 B 2 VAL A 192 LYS A 195 0 SHEET 2 B 2 SER A 220 HIS A 223 -1 O TYR A 221 N LYS A 194 SHEET 1 C 7 PHE A 230 LEU A 231 0 SHEET 2 C 7 PRO B 250 GLU B 253 1 O LEU B 252 N LEU A 231 SHEET 3 C 7 ILE B 237 TYR B 242 -1 N SER B 241 O ALA B 251 SHEET 4 C 7 ARG B 7 ARG B 12 -1 N CYS B 8 O LEU B 240 SHEET 5 C 7 ASP B 170 ALA B 175 1 O VAL B 173 N ILE B 9 SHEET 6 C 7 ILE B 59 THR B 64 1 N PHE B 63 O MET B 172 SHEET 7 C 7 ARG B 90 VAL B 93 1 O VAL B 92 N ILE B 62 SHEET 1 D 2 VAL B 192 LYS B 195 0 SHEET 2 D 2 SER B 220 HIS B 223 -1 O TYR B 221 N LYS B 194 SITE 1 AC1 14 ARG A 12 SER A 19 TYR A 24 THR A 25 SITE 2 AC1 14 ARG A 69 GLU A 99 TYR A 102 HIS A 176 SITE 3 AC1 14 GLY A 177 HIS A 178 ARG A 181 HOH A 279 SITE 4 AC1 14 HOH A 281 HIS B 244 SITE 1 AC2 12 HIS A 244 ARG B 12 SER B 19 TYR B 24 SITE 2 AC2 12 THR B 25 ARG B 69 GLU B 99 TYR B 102 SITE 3 AC2 12 HIS B 176 GLY B 177 HIS B 178 ARG B 181 CRYST1 83.620 84.022 101.568 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009846 0.00000