HEADER TRANSFERASE 28-JAN-10 3LL7 TITLE CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE PG_1098 FROM TITLE 2 PORPHYROMONAS GINGIVALIS W83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 GENE: PG_1098; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PMCSG19B KEYWDS METHYTRANSFERASE, STRUCTURAL GENOMICS, MCSG, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,G.CHHOR,K.BUCK,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 01-NOV-17 3LL7 1 REMARK REVDAT 2 13-JUL-11 3LL7 1 VERSN REVDAT 1 16-FEB-10 3LL7 0 JRNL AUTH C.CHANG,G.CHHOR,K.BUCK,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE PG_1098 FROM JRNL TITL 2 PORPHYROMONAS GINGIVALIS W83 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2381 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 357 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : -1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.715 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3464 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4712 ; 1.541 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.850 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;32.338 ;23.453 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;12.719 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.972 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 538 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2600 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2166 ; 0.762 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3519 ; 1.354 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1298 ; 2.170 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1193 ; 3.584 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3464 -18.5316 10.9988 REMARK 3 T TENSOR REMARK 3 T11: 0.0366 T22: 0.0994 REMARK 3 T33: 0.1193 T12: -0.0088 REMARK 3 T13: -0.0422 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 3.3284 L22: 2.3450 REMARK 3 L33: 1.4042 L12: 2.2753 REMARK 3 L13: 1.8251 L23: 1.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.2866 S12: 0.0190 S13: -0.3296 REMARK 3 S21: 0.1468 S22: -0.0424 S23: -0.2692 REMARK 3 S31: 0.2175 S32: 0.0325 S33: -0.2442 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0741 -5.9916 29.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.1464 T22: 0.1513 REMARK 3 T33: 0.1043 T12: 0.0166 REMARK 3 T13: -0.0034 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.8147 L22: 1.5763 REMARK 3 L33: 5.0818 L12: 0.0699 REMARK 3 L13: 1.9145 L23: -0.4029 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0840 S13: -0.0258 REMARK 3 S21: 0.1091 S22: -0.0006 S23: -0.0268 REMARK 3 S31: -0.3168 S32: -0.2870 S33: 0.0224 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 161 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): 46.9762 -4.9456 35.1244 REMARK 3 T TENSOR REMARK 3 T11: 0.0964 T22: 0.1436 REMARK 3 T33: 0.0488 T12: -0.0903 REMARK 3 T13: -0.0022 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 3.4311 L22: 9.1144 REMARK 3 L33: 8.0965 L12: -2.2296 REMARK 3 L13: 1.7031 L23: -1.5473 REMARK 3 S TENSOR REMARK 3 S11: -0.0934 S12: 0.3250 S13: -0.0468 REMARK 3 S21: -0.1776 S22: -0.1390 S23: -0.4473 REMARK 3 S31: -0.2522 S32: 0.8591 S33: 0.2324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 50.6195 -6.4723 42.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1911 REMARK 3 T33: 0.0847 T12: -0.0956 REMARK 3 T13: -0.0062 T23: 0.0736 REMARK 3 L TENSOR REMARK 3 L11: 1.0525 L22: 3.3806 REMARK 3 L33: 6.9933 L12: 0.1957 REMARK 3 L13: 0.9505 L23: -2.4581 REMARK 3 S TENSOR REMARK 3 S11: -0.1832 S12: 0.2425 S13: 0.0599 REMARK 3 S21: -0.1372 S22: -0.3220 S23: -0.3654 REMARK 3 S31: -0.4151 S32: 1.0964 S33: 0.5053 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): 42.5310 -10.3099 54.9539 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0403 REMARK 3 T33: 0.0901 T12: 0.0202 REMARK 3 T13: 0.0020 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 2.5671 L22: 4.1168 REMARK 3 L33: 9.2418 L12: 0.7271 REMARK 3 L13: 3.5458 L23: -0.4459 REMARK 3 S TENSOR REMARK 3 S11: -0.4091 S12: -0.1216 S13: 0.0449 REMARK 3 S21: -0.0032 S22: 0.1328 S23: 0.2137 REMARK 3 S31: -0.5860 S32: -0.3053 S33: 0.2763 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7087 -22.5889 63.8867 REMARK 3 T TENSOR REMARK 3 T11: 0.0852 T22: 0.0515 REMARK 3 T33: 0.0523 T12: -0.0136 REMARK 3 T13: 0.0407 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.5388 L22: 3.3459 REMARK 3 L33: 0.3193 L12: 0.6083 REMARK 3 L13: 0.5912 L23: -0.2680 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.0309 S13: 0.1036 REMARK 3 S21: 0.2789 S22: -0.1041 S23: 0.0504 REMARK 3 S31: -0.0231 S32: 0.0532 S33: 0.0505 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 407 REMARK 3 ORIGIN FOR THE GROUP (A): 40.8094 -40.8620 59.2835 REMARK 3 T TENSOR REMARK 3 T11: 0.0205 T22: 0.0130 REMARK 3 T33: 0.0686 T12: -0.0019 REMARK 3 T13: 0.0157 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.4610 L22: 2.6718 REMARK 3 L33: 2.7513 L12: 0.8377 REMARK 3 L13: -0.3505 L23: 0.1194 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.1091 S13: -0.0335 REMARK 3 S21: 0.1360 S22: 0.0129 S23: 0.0297 REMARK 3 S31: 0.1580 S32: -0.0334 S33: 0.0069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LL7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97901 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.99900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, 10% PEG8000, 8% ETHYLENE REMARK 280 GLYCOL, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.24250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 SER A 172 REMARK 465 GLY A 173 REMARK 465 ALA A 174 REMARK 465 ASP A 175 REMARK 465 LYS A 176 REMARK 465 ASP A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 178 CG1 CG2 REMARK 470 LEU A 262 CG CD1 CD2 REMARK 470 THR A 265 OG1 CG2 REMARK 470 GLU A 407 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 335 O HOH A 495 1.80 REMARK 500 O PRO A 282 O HOH A 610 1.89 REMARK 500 OG SER A 278 O HOH A 773 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 333 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -98.58 -84.50 REMARK 500 ASN A 31 161.88 50.32 REMARK 500 SER A 62 -89.81 -39.60 REMARK 500 SER A 63 -4.86 89.93 REMARK 500 SER A 63 32.57 -88.04 REMARK 500 ASN A 137 173.16 -59.62 REMARK 500 TYR A 283 168.55 74.88 REMARK 500 ALA A 303 46.21 -82.02 REMARK 500 ASN A 366 83.44 70.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC90227 RELATED DB: TARGETDB DBREF 3LL7 A 1 407 UNP Q7MVG6 Q7MVG6_PORGI 1 407 SEQADV 3LL7 SER A -2 UNP Q7MVG6 EXPRESSION TAG SEQADV 3LL7 ASN A -1 UNP Q7MVG6 EXPRESSION TAG SEQADV 3LL7 ALA A 0 UNP Q7MVG6 EXPRESSION TAG SEQRES 1 A 410 SER ASN ALA MSE LEU PHE ASP GLU LYS GLU ILE LEU ALA SEQRES 2 A 410 ILE THR ARG TRP ALA LYS LEU TYR ALA ASN GLN SER PRO SEQRES 3 A 410 ASP ARG ILE LEU LEU GLY SER ASN ASP ILE PRO PRO GLU SEQRES 4 A 410 TYR ARG ALA ALA VAL ALA THR GLN ILE GLU LEU TRP PRO SEQRES 5 A 410 ARG LEU ARG ASN LYS LEU PRO GLN TRP ALA GLY ILE SER SEQRES 6 A 410 SER LEU TYR ILE PRO SER ARG LEU SER LEU GLU GLN SER SEQRES 7 A 410 SER GLY ALA VAL THR SER SER TYR LYS SER ARG PHE ILE SEQRES 8 A 410 ARG GLU GLY THR LYS VAL VAL ASP LEU THR GLY GLY LEU SEQRES 9 A 410 GLY ILE ASP PHE ILE ALA LEU MSE SER LYS ALA SER GLN SEQRES 10 A 410 GLY ILE TYR ILE GLU ARG ASN ASP GLU THR ALA VAL ALA SEQRES 11 A 410 ALA ARG HIS ASN ILE PRO LEU LEU LEU ASN GLU GLY LYS SEQRES 12 A 410 ASP VAL ASN ILE LEU THR GLY ASP PHE LYS GLU TYR LEU SEQRES 13 A 410 PRO LEU ILE LYS THR PHE HIS PRO ASP TYR ILE TYR VAL SEQRES 14 A 410 ASP PRO ALA ARG ARG SER GLY ALA ASP LYS ARG VAL TYR SEQRES 15 A 410 ALA ILE ALA ASP CYS GLU PRO ASP LEU ILE PRO LEU ALA SEQRES 16 A 410 THR GLU LEU LEU PRO PHE CYS SER SER ILE LEU ALA LYS SEQRES 17 A 410 LEU SER PRO MSE ILE ASP LEU TRP ASP THR LEU GLN SER SEQRES 18 A 410 LEU LEU HIS VAL GLN GLU LEU HIS VAL VAL ALA ALA HIS SEQRES 19 A 410 GLY GLU VAL LYS GLU LEU LEU VAL ARG MSE SER LEU ASN SEQRES 20 A 410 GLU ALA THR ILE PRO PRO GLU LYS VAL PRO ILE HIS ALA SEQRES 21 A 410 ILE ASN LEU LEU LEU GLU ASP THR VAL ILE PRO PHE ILE SEQRES 22 A 410 PHE THR MSE GLU GLU GLU ARG SER ILE SER ILE PRO TYR SEQRES 23 A 410 THR ASP SER ILE ASP LYS TYR VAL TYR GLU PRO HIS THR SEQRES 24 A 410 ALA LEU LEU LYS ALA GLY ALA PHE LYS THR VAL ALA TYR SEQRES 25 A 410 ARG LEU GLY LEU ARG LYS LEU HIS PRO ASN SER HIS LEU SEQRES 26 A 410 TYR THR SER GLU ALA TYR GLU SER ALA PHE PRO GLY ARG SEQRES 27 A 410 THR PHE VAL LEU GLU GLU ILE ILE PRO PHE SER THR SER SEQRES 28 A 410 VAL LEU LYS GLN LEU ARG LYS VAL VAL PRO GLN ALA SER SEQRES 29 A 410 ILE SER CYS ARG ASN PHE PRO LEU SER PRO ILE GLU LEU SEQRES 30 A 410 ARG GLN ARG SER LYS MSE ALA ASP GLY GLY GLU LYS THR SEQRES 31 A 410 LEU MSE GLY THR THR MSE ALA ASP GLY LYS LYS VAL LEU SEQRES 32 A 410 LEU LEU LEU ARG LYS ALA GLU MODRES 3LL7 MSE A 1 MET SELENOMETHIONINE MODRES 3LL7 MSE A 109 MET SELENOMETHIONINE MODRES 3LL7 MSE A 209 MET SELENOMETHIONINE MODRES 3LL7 MSE A 241 MET SELENOMETHIONINE MODRES 3LL7 MSE A 273 MET SELENOMETHIONINE MODRES 3LL7 MSE A 380 MET SELENOMETHIONINE MODRES 3LL7 MSE A 389 MET SELENOMETHIONINE MODRES 3LL7 MSE A 393 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 109 8 HET MSE A 209 16 HET MSE A 241 8 HET MSE A 273 8 HET MSE A 380 8 HET MSE A 389 8 HET MSE A 393 8 HET EDO A 501 4 HET EDO A 502 4 HET FMT A 503 3 HET FMT A 504 3 HET FMT A 505 3 HET EDO A 507 4 HET EDO A 508 4 HET FMT A 509 3 HET FMT A 510 3 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 EDO 4(C2 H6 O2) FORMUL 4 FMT 5(C H2 O2) FORMUL 11 HOH *357(H2 O) HELIX 1 1 ASP A 4 TYR A 18 1 15 HELIX 2 2 SER A 22 GLY A 29 1 8 HELIX 3 3 PRO A 34 GLU A 36 5 3 HELIX 4 4 TYR A 37 LEU A 55 1 19 HELIX 5 5 LEU A 55 GLY A 60 1 6 HELIX 6 6 SER A 68 SER A 75 1 8 HELIX 7 7 GLY A 77 LYS A 84 1 8 HELIX 8 8 SER A 85 ILE A 88 5 4 HELIX 9 9 GLY A 102 SER A 110 1 9 HELIX 10 10 ASN A 121 LEU A 136 1 16 HELIX 11 11 ASP A 148 GLU A 151 5 4 HELIX 12 12 TYR A 152 HIS A 160 1 9 HELIX 13 13 ALA A 180 ALA A 182 5 3 HELIX 14 14 ASP A 187 LEU A 196 1 10 HELIX 15 15 PRO A 197 CYS A 199 5 3 HELIX 16 16 ASP A 211 LEU A 219 1 9 HELIX 17 17 PRO A 249 VAL A 253 5 5 HELIX 18 18 THR A 272 ILE A 279 1 8 HELIX 19 19 HIS A 295 GLY A 302 1 8 HELIX 20 20 ALA A 303 GLY A 312 1 10 HELIX 21 21 SER A 346 VAL A 356 5 11 HELIX 22 22 SER A 370 LYS A 379 1 10 SHEET 1 A 9 ASP A 141 THR A 146 0 SHEET 2 A 9 GLN A 114 GLU A 119 1 N TYR A 117 O LEU A 145 SHEET 3 A 9 LYS A 93 ASP A 96 1 N ASP A 96 O ILE A 116 SHEET 4 A 9 TYR A 163 VAL A 166 1 O TYR A 165 N VAL A 95 SHEET 5 A 9 SER A 201 LEU A 206 1 O LEU A 203 N ILE A 164 SHEET 6 A 9 GLU A 233 MSE A 241 -1 O LEU A 237 N LEU A 206 SHEET 7 A 9 VAL A 222 ALA A 230 -1 N GLN A 223 O ARG A 240 SHEET 8 A 9 ILE A 255 LEU A 260 1 O HIS A 256 N VAL A 227 SHEET 9 A 9 PHE A 269 PHE A 271 -1 O PHE A 271 N ILE A 255 SHEET 1 B 2 ALA A 169 ARG A 170 0 SHEET 2 B 2 CYS A 184 GLU A 185 -1 O GLU A 185 N ALA A 169 SHEET 1 C 7 ARG A 314 HIS A 317 0 SHEET 2 C 7 SER A 320 SER A 325 -1 O THR A 324 N ARG A 314 SHEET 3 C 7 TYR A 290 PRO A 294 -1 N TYR A 292 O TYR A 323 SHEET 4 C 7 GLY A 334 PRO A 344 -1 O PHE A 337 N VAL A 291 SHEET 5 C 7 LYS A 398 LYS A 405 -1 O LEU A 400 N ILE A 343 SHEET 6 C 7 LYS A 386 THR A 392 -1 N THR A 387 O LEU A 403 SHEET 7 C 7 SER A 361 ARG A 365 1 N ARG A 365 O GLY A 390 LINK C MSE A 1 N LEU A 2 1555 1555 1.35 LINK C LEU A 108 N MSE A 109 1555 1555 1.33 LINK C MSE A 109 N SER A 110 1555 1555 1.34 LINK C PRO A 208 N AMSE A 209 1555 1555 1.33 LINK C PRO A 208 N BMSE A 209 1555 1555 1.34 LINK C AMSE A 209 N ILE A 210 1555 1555 1.34 LINK C BMSE A 209 N ILE A 210 1555 1555 1.33 LINK C ARG A 240 N MSE A 241 1555 1555 1.34 LINK C MSE A 241 N SER A 242 1555 1555 1.33 LINK C THR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N GLU A 274 1555 1555 1.34 LINK C LYS A 379 N MSE A 380 1555 1555 1.33 LINK C MSE A 380 N ALA A 381 1555 1555 1.32 LINK C LEU A 388 N MSE A 389 1555 1555 1.33 LINK C MSE A 389 N GLY A 390 1555 1555 1.32 LINK C THR A 392 N MSE A 393 1555 1555 1.34 LINK C MSE A 393 N ALA A 394 1555 1555 1.34 CISPEP 1 GLU A 185 PRO A 186 0 6.00 SITE 1 AC1 4 ARG A 365 ASN A 366 PHE A 367 HOH A 613 SITE 1 AC2 5 ILE A 362 PRO A 371 ILE A 372 ARG A 375 SITE 2 AC2 5 HOH A 640 SITE 1 AC3 9 SER A 75 GLY A 99 LEU A 101 GLY A 102 SITE 2 AC3 9 ILE A 103 ASP A 104 HOH A 456 EDO A 507 SITE 3 AC3 9 HOH A 702 SITE 1 AC4 7 ALA A 257 ASN A 259 VAL A 266 ILE A 267 SITE 2 AC4 7 PHE A 269 HIS A 295 PRO A 333 SITE 1 AC5 2 HIS A 321 HOH A 608 SITE 1 AC6 5 THR A 98 GLY A 99 ASP A 167 FMT A 503 SITE 2 AC6 5 HOH A 702 SITE 1 AC7 5 LYS A 6 TRP A 14 TYR A 37 HOH A 550 SITE 2 AC7 5 HOH A 593 SITE 1 AC8 4 ASN A 259 HIS A 295 PRO A 333 GLY A 334 SITE 1 AC9 4 HIS A 317 ASN A 319 ASN A 366 LYS A 398 CRYST1 53.132 78.485 64.063 90.00 104.65 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018821 0.000000 0.004921 0.00000 SCALE2 0.000000 0.012741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016134 0.00000 HETATM 1 N MSE A 1 39.389 -16.427 10.051 1.00 25.36 N HETATM 2 CA MSE A 1 38.412 -15.433 9.504 1.00 24.35 C HETATM 3 C MSE A 1 38.032 -14.354 10.501 1.00 22.72 C HETATM 4 O MSE A 1 37.465 -14.687 11.574 1.00 24.17 O HETATM 5 CB MSE A 1 37.138 -16.150 9.084 1.00 24.96 C HETATM 6 CG MSE A 1 37.177 -16.685 7.721 1.00 26.91 C HETATM 7 SE MSE A 1 35.358 -17.084 7.271 0.75 33.92 SE HETATM 8 CE MSE A 1 34.755 -15.378 6.489 1.00 28.06 C