HEADER HYDROLASE 28-JAN-10 3LLC TITLE CRYSTAL STRUCTURE OF PUTATIVE HYDROLASE (YP_002548124.1) FROM TITLE 2 AGROBACTERIUM VITIS S4 AT 1.80 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM VITIS; SOURCE 3 ORGANISM_COMMON: RHIZOBIUM VITIS (STRAIN S4); SOURCE 4 ORGANISM_TAXID: 311402; SOURCE 5 STRAIN: S4 / ATCC BAA-846; SOURCE 6 GENE: AVI_0199; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE HYDROLASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3LLC 1 REMARK SEQADV REVDAT 4 17-JUL-19 3LLC 1 REMARK LINK REVDAT 3 01-NOV-17 3LLC 1 REMARK REVDAT 2 13-JUL-11 3LLC 1 VERSN REVDAT 1 23-MAR-10 3LLC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE HYDROLASE (YP_002548124.1) JRNL TITL 2 FROM AGROBACTERIUM VITIS S4 AT 1.80 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2412 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1982 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.48000 REMARK 3 B22 (A**2) : -1.48000 REMARK 3 B33 (A**2) : 2.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2207 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1542 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3014 ; 1.436 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3769 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 307 ; 5.095 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;36.772 ;23.654 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;13.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 337 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2513 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 438 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1368 ; 1.724 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 553 ; 0.492 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2221 ; 2.766 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 839 ; 4.293 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 769 ; 6.401 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8381 3.6172 -0.0326 REMARK 3 T TENSOR REMARK 3 T11: 0.0494 T22: 0.0568 REMARK 3 T33: 0.0141 T12: -0.0072 REMARK 3 T13: -0.0054 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.2502 L22: 2.8390 REMARK 3 L33: 0.9559 L12: -0.5615 REMARK 3 L13: -0.1807 L23: -0.3919 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: -0.0247 S13: -0.1553 REMARK 3 S21: -0.0064 S22: -0.0341 S23: -0.0437 REMARK 3 S31: 0.0686 S32: -0.0085 S33: 0.0306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORDS CONTAIN RESIDUAL B FACTORS REMARK 3 ONLY. 3.A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED REMARK 3 SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4.PEG3350 REMARK 3 FRAGMENTS (PEG AND PG4) AND CHLORIDE (CL) FROM THE REMARK 3 CRYSTALLIZATION SOLUTION AND 1,2-ETHANEDIOL (EDO) FROM THE REMARK 3 CRYOPROTECTANT SOLUTION HAVE BEEN MODELED IN THE SOLVENT REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3LLC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97949,0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35908 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 28.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.107 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M NACL, 20.0000% PEG-3350, NO REMARK 280 BUFFER PH 6.9, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.74850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.32600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.32600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.87425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.32600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.32600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 44.62275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.32600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.32600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.87425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.32600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.32600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.62275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 29.74850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS SUPPORTS THE ASSIGNMENT OF A REMARK 300 MONOMER AS THE SIGNIFICANT OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 GLY A 5 REMARK 465 PRO A 267 REMARK 465 ARG A 268 REMARK 465 PRO A 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 106 CE NZ REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLU A 180 CD OE1 OE2 REMARK 470 ARG A 247 NE CZ NH1 NH2 REMARK 470 ARG A 262 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -115.28 57.38 REMARK 500 SER A 178 156.34 179.05 REMARK 500 ASP A 245 -167.94 -103.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 270 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 272 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 273 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 274 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 275 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 276 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 277 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 401112 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3LLC A 1 269 UNP B9JYM4 B9JYM4_AGRVS 1 269 SEQADV 3LLC GLY A 0 UNP B9JYM4 EXPRESSION TAG SEQRES 1 A 270 GLY MSE THR ASN VAL GLY ARG PRO ILE GLU THR HIS ALA SEQRES 2 A 270 ILE THR VAL GLY GLN GLY SER ASP ALA ARG SER ILE ALA SEQRES 3 A 270 ALA LEU VAL ARG ALA PRO ALA GLN ASP GLU ARG PRO THR SEQRES 4 A 270 CYS ILE TRP LEU GLY GLY TYR ARG SER ASP MSE THR GLY SEQRES 5 A 270 THR LYS ALA LEU GLU MSE ASP ASP LEU ALA ALA SER LEU SEQRES 6 A 270 GLY VAL GLY ALA ILE ARG PHE ASP TYR SER GLY HIS GLY SEQRES 7 A 270 ALA SER GLY GLY ALA PHE ARG ASP GLY THR ILE SER ARG SEQRES 8 A 270 TRP LEU GLU GLU ALA LEU ALA VAL LEU ASP HIS PHE LYS SEQRES 9 A 270 PRO GLU LYS ALA ILE LEU VAL GLY SER SER MSE GLY GLY SEQRES 10 A 270 TRP ILE ALA LEU ARG LEU ILE GLN GLU LEU LYS ALA ARG SEQRES 11 A 270 HIS ASP ASN PRO THR GLN VAL SER GLY MSE VAL LEU ILE SEQRES 12 A 270 ALA PRO ALA PRO ASP PHE THR SER ASP LEU ILE GLU PRO SEQRES 13 A 270 LEU LEU GLY ASP ARG GLU ARG ALA GLU LEU ALA GLU ASN SEQRES 14 A 270 GLY TYR PHE GLU GLU VAL SER GLU TYR SER PRO GLU PRO SEQRES 15 A 270 ASN ILE PHE THR ARG ALA LEU MSE GLU ASP GLY ARG ALA SEQRES 16 A 270 ASN ARG VAL MSE ALA GLY MSE ILE ASP THR GLY CYS PRO SEQRES 17 A 270 VAL HIS ILE LEU GLN GLY MSE ALA ASP PRO ASP VAL PRO SEQRES 18 A 270 TYR GLN HIS ALA LEU LYS LEU VAL GLU HIS LEU PRO ALA SEQRES 19 A 270 ASP ASP VAL VAL LEU THR LEU VAL ARG ASP GLY ASP HIS SEQRES 20 A 270 ARG LEU SER ARG PRO GLN ASP ILE ASP ARG MSE ARG ASN SEQRES 21 A 270 ALA ILE ARG ALA MSE ILE GLU PRO ARG PRO MODRES 3LLC MSE A 49 MET SELENOMETHIONINE MODRES 3LLC MSE A 57 MET SELENOMETHIONINE MODRES 3LLC MSE A 114 MET SELENOMETHIONINE MODRES 3LLC MSE A 139 MET SELENOMETHIONINE MODRES 3LLC MSE A 189 MET SELENOMETHIONINE MODRES 3LLC MSE A 198 MET SELENOMETHIONINE MODRES 3LLC MSE A 201 MET SELENOMETHIONINE MODRES 3LLC MSE A 214 MET SELENOMETHIONINE MODRES 3LLC MSE A 257 MET SELENOMETHIONINE MODRES 3LLC MSE A 264 MET SELENOMETHIONINE HET MSE A 49 8 HET MSE A 57 8 HET MSE A 114 8 HET MSE A 139 13 HET MSE A 189 8 HET MSE A 198 8 HET MSE A 201 8 HET MSE A 214 8 HET MSE A 257 8 HET MSE A 264 8 HET CL A 270 1 HET EDO A 271 4 HET EDO A 272 4 HET EDO A 273 4 HET EDO A 274 4 HET EDO A 275 4 HET PEG A 276 7 HET PG4 A 277 13 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 PEG C4 H10 O3 FORMUL 9 PG4 C8 H18 O5 FORMUL 10 HOH *252(H2 O) HELIX 1 1 GLN A 17 ALA A 21 5 5 HELIX 2 2 GLY A 51 GLY A 65 1 15 HELIX 3 3 ALA A 82 GLY A 86 5 5 HELIX 4 4 THR A 87 LYS A 103 1 17 HELIX 5 5 MSE A 114 ALA A 128 1 15 HELIX 6 6 ASP A 147 LEU A 152 1 6 HELIX 7 7 ILE A 153 LEU A 157 5 5 HELIX 8 8 GLY A 158 GLY A 169 1 12 HELIX 9 9 ARG A 186 ASN A 195 1 10 HELIX 10 10 PRO A 220 HIS A 230 1 11 HELIX 11 11 ARG A 250 GLU A 266 1 17 SHEET 1 A 8 ILE A 8 VAL A 15 0 SHEET 2 A 8 ARG A 22 ARG A 29 -1 O ILE A 24 N ILE A 13 SHEET 3 A 8 GLY A 67 PHE A 71 -1 O ALA A 68 N ARG A 29 SHEET 4 A 8 THR A 38 LEU A 42 1 N CYS A 39 O GLY A 67 SHEET 5 A 8 LYS A 106 SER A 112 1 O VAL A 110 N ILE A 40 SHEET 6 A 8 GLN A 135 ILE A 142 1 O VAL A 140 N LEU A 109 SHEET 7 A 8 VAL A 208 GLY A 213 1 O LEU A 211 N LEU A 141 SHEET 8 A 8 VAL A 236 VAL A 241 1 O THR A 239 N ILE A 210 SHEET 1 B 2 TYR A 170 GLU A 173 0 SHEET 2 B 2 ASN A 182 THR A 185 -1 O ASN A 182 N GLU A 173 LINK C ASP A 48 N MSE A 49 1555 1555 1.33 LINK C MSE A 49 N THR A 50 1555 1555 1.34 LINK C GLU A 56 N MSE A 57 1555 1555 1.32 LINK C MSE A 57 N ASP A 58 1555 1555 1.33 LINK C SER A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N GLY A 115 1555 1555 1.33 LINK C GLY A 138 N MSE A 139 1555 1555 1.34 LINK C MSE A 139 N VAL A 140 1555 1555 1.35 LINK C LEU A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N GLU A 190 1555 1555 1.33 LINK C VAL A 197 N MSE A 198 1555 1555 1.35 LINK C MSE A 198 N ALA A 199 1555 1555 1.33 LINK C GLY A 200 N MSE A 201 1555 1555 1.34 LINK C MSE A 201 N ILE A 202 1555 1555 1.33 LINK C GLY A 213 N MSE A 214 1555 1555 1.33 LINK C MSE A 214 N ALA A 215 1555 1555 1.33 LINK C ARG A 256 N MSE A 257 1555 1555 1.33 LINK C MSE A 257 N ARG A 258 1555 1555 1.32 LINK C ALA A 263 N MSE A 264 1555 1555 1.34 LINK C MSE A 264 N ILE A 265 1555 1555 1.34 SITE 1 AC1 4 THR A 52 LYS A 53 HOH A 319 HOH A 392 SITE 1 AC2 7 SER A 23 GLN A 124 VAL A 197 GLY A 200 SITE 2 AC2 7 MSE A 201 EDO A 272 HOH A 284 SITE 1 AC3 7 ARG A 121 GLN A 124 ALA A 194 ARG A 196 SITE 2 AC3 7 EDO A 271 HOH A 505 HOH A 511 SITE 1 AC4 6 ILE A 123 LEU A 126 ASN A 132 GLN A 135 SITE 2 AC4 6 VAL A 136 HOH A 434 SITE 1 AC5 3 VAL A 28 THR A 38 PRO A 104 SITE 1 AC6 1 GLU A 56 SITE 1 AC7 3 GLU A 9 THR A 10 HOH A 384 SITE 1 AC8 5 TYR A 45 SER A 113 MSE A 114 GLU A 173 SITE 2 AC8 5 ASP A 218 CRYST1 112.652 112.652 59.497 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008877 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016808 0.00000