data_3LLM # _entry.id 3LLM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3LLM RCSB RCSB057428 WWPDB D_1000057428 # _pdbx_database_status.entry_id 3LLM _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-01-29 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schutz, P.' 1 'Karlberg, T.' 2 'Collins, R.' 3 'Arrowsmith, C.H.' 4 'Berglund, H.' 5 'Bountra, C.' 6 'Flodin, S.' 7 'Flores, A.' 8 'Graslund, S.' 9 'Hammarstrom, M.' 10 'Johansson, A.' 11 'Johansson, I.' 12 'Kallas, A.' 13 'Kraulis, P.' 14 'Kotenyova, T.' 15 'Kotzsch, A.' 16 'Markova, N.' 17 'Moche, M.' 18 'Nielsen, T.K.' 19 'Nordlund, P.' 20 'Nyman, T.' 21 'Persson, C.' 22 'Roos, A.K.' 23 'Siponen, M.I.' 24 'Svensson, L.' 25 'Thorsell, A.G.' 26 'Tresaugues, L.' 27 'Van Den Berg, S.' 28 'Wahlberg, E.' 29 'Weigelt, J.' 30 'Welin, M.' 31 'Wisniewska, M.' 32 'Schuler, H.M.' 33 'Structural Genomics Consortium (SGC)' 34 # _citation.id primary _citation.title ;Crystal structure of human RNA helicase A (DHX9): structural basis for unselective nucleotide base binding in a DEAD-box variant protein. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 400 _citation.page_first 768 _citation.page_last 782 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20510246 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.05.046 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schutz, P.' 1 primary 'Wahlberg, E.' 2 primary 'Karlberg, T.' 3 primary 'Hammarstrom, M.' 4 primary 'Collins, R.' 5 primary 'Flores, A.' 6 primary 'Schuler, H.' 7 # _cell.length_a 113.700 _cell.length_b 113.700 _cell.length_c 141.650 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 3LLM _cell.pdbx_unique_axis ? _cell.Z_PDB 12 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.entry_id 3LLM _symmetry.Int_Tables_number 154 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ATP-dependent RNA helicase A' 26765.787 2 3.6.1.- ? 'Nucleotide binding domain (UNP residues 329-563)' ? 2 non-polymer syn 'MANGANESE (II) ION' 54.938 2 ? ? ? ? 3 non-polymer syn 'CACODYLATE ION' 136.989 1 ? ? ? ? 4 non-polymer syn "ADENOSINE-5'-DIPHOSPHATE" 427.201 2 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 27 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Nuclear DNA helicase II, NDH II, DEAH box protein 9' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQIS(MSE)DLKNEL(MSE)YQLEQDHDLQAILQERELLPVKKFESEILEA ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP RPHASI(MSE)FCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVL(MSE)SATIDTS (MSE)FCEYFFNCPIIEV ; _entity_poly.pdbx_seq_one_letter_code_can ;VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVI IRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMF CTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 VAL n 1 3 PRO n 1 4 TRP n 1 5 SER n 1 6 PRO n 1 7 PRO n 1 8 GLN n 1 9 SER n 1 10 ASN n 1 11 TRP n 1 12 ASN n 1 13 PRO n 1 14 TRP n 1 15 THR n 1 16 SER n 1 17 SER n 1 18 ASN n 1 19 ILE n 1 20 ASP n 1 21 GLU n 1 22 GLY n 1 23 PRO n 1 24 LEU n 1 25 ALA n 1 26 PHE n 1 27 ALA n 1 28 THR n 1 29 PRO n 1 30 GLU n 1 31 GLN n 1 32 ILE n 1 33 SER n 1 34 MSE n 1 35 ASP n 1 36 LEU n 1 37 LYS n 1 38 ASN n 1 39 GLU n 1 40 LEU n 1 41 MSE n 1 42 TYR n 1 43 GLN n 1 44 LEU n 1 45 GLU n 1 46 GLN n 1 47 ASP n 1 48 HIS n 1 49 ASP n 1 50 LEU n 1 51 GLN n 1 52 ALA n 1 53 ILE n 1 54 LEU n 1 55 GLN n 1 56 GLU n 1 57 ARG n 1 58 GLU n 1 59 LEU n 1 60 LEU n 1 61 PRO n 1 62 VAL n 1 63 LYS n 1 64 LYS n 1 65 PHE n 1 66 GLU n 1 67 SER n 1 68 GLU n 1 69 ILE n 1 70 LEU n 1 71 GLU n 1 72 ALA n 1 73 ILE n 1 74 SER n 1 75 GLN n 1 76 ASN n 1 77 SER n 1 78 VAL n 1 79 VAL n 1 80 ILE n 1 81 ILE n 1 82 ARG n 1 83 GLY n 1 84 ALA n 1 85 THR n 1 86 GLY n 1 87 CYS n 1 88 GLY n 1 89 LYS n 1 90 THR n 1 91 THR n 1 92 GLN n 1 93 VAL n 1 94 PRO n 1 95 GLN n 1 96 PHE n 1 97 ILE n 1 98 LEU n 1 99 ASP n 1 100 ASP n 1 101 PHE n 1 102 ILE n 1 103 GLN n 1 104 ASN n 1 105 ASP n 1 106 ARG n 1 107 ALA n 1 108 ALA n 1 109 GLU n 1 110 CYS n 1 111 ASN n 1 112 ILE n 1 113 VAL n 1 114 VAL n 1 115 THR n 1 116 GLN n 1 117 PRO n 1 118 ARG n 1 119 ARG n 1 120 ILE n 1 121 SER n 1 122 ALA n 1 123 VAL n 1 124 SER n 1 125 VAL n 1 126 ALA n 1 127 GLU n 1 128 ARG n 1 129 VAL n 1 130 ALA n 1 131 PHE n 1 132 GLU n 1 133 ARG n 1 134 GLY n 1 135 GLU n 1 136 GLU n 1 137 PRO n 1 138 GLY n 1 139 LYS n 1 140 SER n 1 141 CYS n 1 142 GLY n 1 143 TYR n 1 144 SER n 1 145 VAL n 1 146 ARG n 1 147 PHE n 1 148 GLU n 1 149 SER n 1 150 ILE n 1 151 LEU n 1 152 PRO n 1 153 ARG n 1 154 PRO n 1 155 HIS n 1 156 ALA n 1 157 SER n 1 158 ILE n 1 159 MSE n 1 160 PHE n 1 161 CYS n 1 162 THR n 1 163 VAL n 1 164 GLY n 1 165 VAL n 1 166 LEU n 1 167 LEU n 1 168 ARG n 1 169 LYS n 1 170 LEU n 1 171 GLU n 1 172 ALA n 1 173 GLY n 1 174 ILE n 1 175 ARG n 1 176 GLY n 1 177 ILE n 1 178 SER n 1 179 HIS n 1 180 VAL n 1 181 ILE n 1 182 VAL n 1 183 ASP n 1 184 GLU n 1 185 ILE n 1 186 HIS n 1 187 GLU n 1 188 ARG n 1 189 ASP n 1 190 ILE n 1 191 ASN n 1 192 THR n 1 193 ASP n 1 194 PHE n 1 195 LEU n 1 196 LEU n 1 197 VAL n 1 198 VAL n 1 199 LEU n 1 200 ARG n 1 201 ASP n 1 202 VAL n 1 203 VAL n 1 204 GLN n 1 205 ALA n 1 206 TYR n 1 207 PRO n 1 208 GLU n 1 209 VAL n 1 210 ARG n 1 211 ILE n 1 212 VAL n 1 213 LEU n 1 214 MSE n 1 215 SER n 1 216 ALA n 1 217 THR n 1 218 ILE n 1 219 ASP n 1 220 THR n 1 221 SER n 1 222 MSE n 1 223 PHE n 1 224 CYS n 1 225 GLU n 1 226 TYR n 1 227 PHE n 1 228 PHE n 1 229 ASN n 1 230 CYS n 1 231 PRO n 1 232 ILE n 1 233 ILE n 1 234 GLU n 1 235 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'DDX9, DHX9, LKP, NDH2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)R3 pRARE' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pNIC-Bsa4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DHX9_HUMAN _struct_ref.pdbx_db_accession Q08211 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVI IRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMF CTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIEV ; _struct_ref.pdbx_align_begin 329 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LLM A 1 ? 235 ? Q08211 329 ? 563 ? 329 563 2 1 3LLM B 1 ? 235 ? Q08211 329 ? 563 ? 329 563 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADP non-polymer n "ADENOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O10 P2' 427.201 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CAC non-polymer . 'CACODYLATE ION' dimethylarsinate 'C2 H6 As O2 -1' 136.989 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LLM _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 75.09 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;0.08 M Sodium cacodylate, 0.16 M Calcium acetate hydrate, 14.4 % PEG 8000, 20 % glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-10-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.98000 1.0 2 0.98020 1.0 3 0.96860 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.98000, 0.98020, 0.96860' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 # _reflns.entry_id 3LLM _reflns.d_resolution_high 2.800 _reflns.d_resolution_low 98.510 _reflns.number_all 26628 _reflns.number_obs 26628 _reflns.pdbx_netI_over_sigmaI 14.100 _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_redundancy 10.800 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.number_measured_obs ? _reflns_shell.number_measured_all 42589 _reflns_shell.number_unique_obs ? _reflns_shell.Rmerge_I_obs 0.010 _reflns_shell.meanI_over_sigI_obs 0.7 _reflns_shell.pdbx_Rsym_value 1.041 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_redundancy 11.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3834 _reflns_shell.percent_possible_all 100.00 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3LLM _refine.ls_d_res_high 2.800 _refine.ls_d_res_low 98.510 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.950 _refine.ls_number_reflns_obs 26598 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.212 _refine.ls_R_factor_R_work 0.211 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.238 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1343 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 65.358 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.820 _refine.aniso_B[2][2] 0.820 _refine.aniso_B[3][3] -1.230 _refine.aniso_B[1][2] 0.410 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.944 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.368 _refine.pdbx_overall_ESU_R_Free 0.263 _refine.overall_SU_ML 0.197 _refine.overall_SU_B 9.989 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 165.68 _refine.B_iso_min 42.18 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3679 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 67 _refine_hist.number_atoms_solvent 27 _refine_hist.number_atoms_total 3773 _refine_hist.d_res_high 2.800 _refine_hist.d_res_low 98.510 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 3826 0.015 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 2556 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 5216 1.457 1.983 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 6251 0.884 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 468 5.611 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 169 38.263 24.379 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 635 16.387 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26 19.733 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 605 0.073 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 4180 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 742 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2356 0.659 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 930 0.113 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3855 1.326 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 1470 2.033 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 1361 3.428 4.500 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'MEDIUM POSITIONAL' A 1385 0.430 0.500 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 1672 0.710 5.000 2 ? ? ? 'X-RAY DIFFRACTION' 1 1 'MEDIUM THERMAL' A 1385 0.630 2.000 3 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 1672 0.700 10.000 4 ? ? ? # _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1844 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.395 _refine_ls_shell.R_factor_R_free 0.423 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 82 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1926 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 5 A 329 A 563 ? . . . . . . . . 1 2 1 5 B 329 B 563 ? . . . . . . . . # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3LLM _struct.title 'Crystal Structure Analysis of a RNA Helicase' _struct.pdbx_descriptor 'ATP-dependent RNA helicase A (E.C.3.6.1.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LLM _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;alpha-beta-alpha, Structural Genomics, Structural Genomics Consortium, SGC, Activator, ATP-binding, DNA-binding, Helicase, Hydrolase, Methylation, Nucleotide-binding, Nucleus, Phosphoprotein, RNA-binding ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 4 ? H N N 5 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 28 ? ASP A 47 ? THR A 356 ASP A 375 1 ? 20 HELX_P HELX_P2 2 ASP A 47 ? LEU A 59 ? ASP A 375 LEU A 387 1 ? 13 HELX_P HELX_P3 3 LEU A 60 ? LYS A 64 ? LEU A 388 LYS A 392 5 ? 5 HELX_P HELX_P4 4 PHE A 65 ? ASN A 76 ? PHE A 393 ASN A 404 1 ? 12 HELX_P HELX_P5 5 GLY A 88 ? ASN A 104 ? GLY A 416 ASN A 432 1 ? 17 HELX_P HELX_P6 6 ARG A 106 ? GLU A 109 ? ARG A 434 GLU A 437 5 ? 4 HELX_P HELX_P7 7 ARG A 118 ? GLU A 132 ? ARG A 446 GLU A 460 1 ? 15 HELX_P HELX_P8 8 VAL A 163 ? GLY A 173 ? VAL A 491 GLY A 501 1 ? 11 HELX_P HELX_P9 9 ASP A 189 ? TYR A 206 ? ASP A 517 TYR A 534 1 ? 18 HELX_P HELX_P10 10 THR A 220 ? PHE A 227 ? THR A 548 PHE A 555 1 ? 8 HELX_P HELX_P11 11 GLY B 22 ? PHE B 26 ? GLY B 350 PHE B 354 5 ? 5 HELX_P HELX_P12 12 THR B 28 ? ASP B 47 ? THR B 356 ASP B 375 1 ? 20 HELX_P HELX_P13 13 ASP B 47 ? LEU B 59 ? ASP B 375 LEU B 387 1 ? 13 HELX_P HELX_P14 14 LEU B 60 ? LYS B 64 ? LEU B 388 LYS B 392 5 ? 5 HELX_P HELX_P15 15 PHE B 65 ? ASN B 76 ? PHE B 393 ASN B 404 1 ? 12 HELX_P HELX_P16 16 GLY B 88 ? ASN B 104 ? GLY B 416 ASN B 432 1 ? 17 HELX_P HELX_P17 17 ARG B 106 ? GLU B 109 ? ARG B 434 GLU B 437 5 ? 4 HELX_P HELX_P18 18 ARG B 118 ? GLU B 132 ? ARG B 446 GLU B 460 1 ? 15 HELX_P HELX_P19 19 VAL B 163 ? GLY B 173 ? VAL B 491 GLY B 501 1 ? 11 HELX_P HELX_P20 20 ASP B 189 ? TYR B 206 ? ASP B 517 TYR B 534 1 ? 18 HELX_P HELX_P21 21 THR B 220 ? PHE B 227 ? THR B 548 PHE B 555 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 33 C ? ? ? 1_555 A MSE 34 N ? ? A SER 361 A MSE 362 1_555 ? ? ? ? ? ? ? 1.343 ? covale2 covale ? ? A MSE 34 C ? ? ? 1_555 A ASP 35 N ? ? A MSE 362 A ASP 363 1_555 ? ? ? ? ? ? ? 1.323 ? covale3 covale ? ? A LEU 40 C ? ? ? 1_555 A MSE 41 N ? ? A LEU 368 A MSE 369 1_555 ? ? ? ? ? ? ? 1.326 ? covale4 covale ? ? A MSE 41 C ? ? ? 1_555 A TYR 42 N ? ? A MSE 369 A TYR 370 1_555 ? ? ? ? ? ? ? 1.319 ? covale5 covale ? ? A ILE 158 C ? ? ? 1_555 A MSE 159 N ? ? A ILE 486 A MSE 487 1_555 ? ? ? ? ? ? ? 1.330 ? covale6 covale ? ? A MSE 159 C ? ? ? 1_555 A PHE 160 N ? ? A MSE 487 A PHE 488 1_555 ? ? ? ? ? ? ? 1.326 ? covale7 covale ? ? A LEU 213 C ? ? ? 1_555 A MSE 214 N ? ? A LEU 541 A MSE 542 1_555 ? ? ? ? ? ? ? 1.324 ? covale8 covale ? ? A MSE 214 C ? ? ? 1_555 A SER 215 N ? ? A MSE 542 A SER 543 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? A SER 221 C ? ? ? 1_555 A MSE 222 N ? ? A SER 549 A MSE 550 1_555 ? ? ? ? ? ? ? 1.321 ? covale10 covale ? ? A MSE 222 C ? ? ? 1_555 A PHE 223 N ? ? A MSE 550 A PHE 551 1_555 ? ? ? ? ? ? ? 1.334 ? covale11 covale ? ? B SER 33 C ? ? ? 1_555 B MSE 34 N ? ? B SER 361 B MSE 362 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? B MSE 34 C ? ? ? 1_555 B ASP 35 N ? ? B MSE 362 B ASP 363 1_555 ? ? ? ? ? ? ? 1.331 ? covale13 covale ? ? B LEU 40 C ? ? ? 1_555 B MSE 41 N ? ? B LEU 368 B MSE 369 1_555 ? ? ? ? ? ? ? 1.337 ? covale14 covale ? ? B MSE 41 C ? ? ? 1_555 B TYR 42 N ? ? B MSE 369 B TYR 370 1_555 ? ? ? ? ? ? ? 1.330 ? covale15 covale ? ? B ILE 158 C ? ? ? 1_555 B MSE 159 N ? ? B ILE 486 B MSE 487 1_555 ? ? ? ? ? ? ? 1.320 ? covale16 covale ? ? B MSE 159 C ? ? ? 1_555 B PHE 160 N ? ? B MSE 487 B PHE 488 1_555 ? ? ? ? ? ? ? 1.314 ? covale17 covale ? ? B LEU 213 C ? ? ? 1_555 B MSE 214 N ? ? B LEU 541 B MSE 542 1_555 ? ? ? ? ? ? ? 1.323 ? covale18 covale ? ? B MSE 214 C ? ? ? 1_555 B SER 215 N ? ? B MSE 542 B SER 543 1_555 ? ? ? ? ? ? ? 1.336 ? covale19 covale ? ? B SER 221 C ? ? ? 1_555 B MSE 222 N ? ? B SER 549 B MSE 550 1_555 ? ? ? ? ? ? ? 1.321 ? covale20 covale ? ? B MSE 222 C ? ? ? 1_555 B PHE 223 N ? ? B MSE 550 B PHE 551 1_555 ? ? ? ? ? ? ? 1.325 ? metalc1 metalc ? ? F MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 2 B HOH 17 1_555 ? ? ? ? ? ? ? 1.828 ? metalc2 metalc ? ? F MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 2 B HOH 18 1_555 ? ? ? ? ? ? ? 1.988 ? metalc3 metalc ? ? B GLU 184 OE2 ? ? ? 1_555 F MN . MN ? ? B GLU 512 B MN 2 1_555 ? ? ? ? ? ? ? 2.013 ? metalc4 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 1 A HOH 21 1_555 ? ? ? ? ? ? ? 2.022 ? metalc5 metalc ? ? B THR 90 OG1 ? ? ? 1_555 F MN . MN ? ? B THR 418 B MN 2 1_555 ? ? ? ? ? ? ? 2.026 ? metalc6 metalc ? ? C MN . MN ? ? ? 1_555 E ADP . O3B ? ? A MN 1 A ADP 565 1_555 ? ? ? ? ? ? ? 2.046 ? metalc7 metalc ? ? F MN . MN ? ? ? 1_555 G ADP . O1B ? ? B MN 2 B ADP 1 1_555 ? ? ? ? ? ? ? 2.073 ? metalc8 metalc ? ? A GLU 184 OE2 ? ? ? 1_555 C MN . MN ? ? A GLU 512 A MN 1 1_555 ? ? ? ? ? ? ? 2.161 ? metalc9 metalc ? ? F MN . MN ? ? ? 1_555 J HOH . O ? ? B MN 2 B HOH 23 1_555 ? ? ? ? ? ? ? 2.170 ? metalc10 metalc ? ? A THR 90 OG1 ? ? ? 1_555 C MN . MN ? ? A THR 418 A MN 1 1_555 ? ? ? ? ? ? ? 2.180 ? metalc11 metalc ? ? C MN . MN ? ? ? 1_555 I HOH . O ? ? A MN 1 A HOH 20 1_555 ? ? ? ? ? ? ? 2.349 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 8 ? C ? 2 ? D ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? parallel B 7 8 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel D 3 4 ? parallel D 4 5 ? parallel D 5 6 ? parallel D 6 7 ? parallel D 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 11 ? ASN A 12 ? TRP A 339 ASN A 340 A 2 SER A 17 ? ASN A 18 ? SER A 345 ASN A 346 B 1 GLU A 148 ? ILE A 150 ? GLU A 476 ILE A 478 B 2 CYS A 141 ? VAL A 145 ? CYS A 469 VAL A 473 B 3 SER A 157 ? THR A 162 ? SER A 485 THR A 490 B 4 ASN A 111 ? GLN A 116 ? ASN A 439 GLN A 444 B 5 HIS A 179 ? VAL A 182 ? HIS A 507 VAL A 510 B 6 ARG A 210 ? SER A 215 ? ARG A 538 SER A 543 B 7 VAL A 78 ? ARG A 82 ? VAL A 406 ARG A 410 B 8 ILE A 233 ? GLU A 234 ? ILE A 561 GLU A 562 C 1 TRP B 11 ? ASN B 12 ? TRP B 339 ASN B 340 C 2 SER B 17 ? ASN B 18 ? SER B 345 ASN B 346 D 1 GLU B 148 ? ILE B 150 ? GLU B 476 ILE B 478 D 2 CYS B 141 ? VAL B 145 ? CYS B 469 VAL B 473 D 3 SER B 157 ? THR B 162 ? SER B 485 THR B 490 D 4 ASN B 111 ? GLN B 116 ? ASN B 439 GLN B 444 D 5 HIS B 179 ? VAL B 182 ? HIS B 507 VAL B 510 D 6 ARG B 210 ? SER B 215 ? ARG B 538 SER B 543 D 7 VAL B 78 ? ARG B 82 ? VAL B 406 ARG B 410 D 8 ILE B 232 ? GLU B 234 ? ILE B 560 GLU B 562 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 12 ? N ASN A 340 O SER A 17 ? O SER A 345 B 1 2 O GLU A 148 ? O GLU A 476 N VAL A 145 ? N VAL A 473 B 2 3 N GLY A 142 ? N GLY A 470 O PHE A 160 ? O PHE A 488 B 3 4 O MSE A 159 ? O MSE A 487 N VAL A 114 ? N VAL A 442 B 4 5 N THR A 115 ? N THR A 443 O ILE A 181 ? O ILE A 509 B 5 6 N VAL A 180 ? N VAL A 508 O ARG A 210 ? O ARG A 538 B 6 7 O LEU A 213 ? O LEU A 541 N ILE A 81 ? N ILE A 409 B 7 8 N ILE A 80 ? N ILE A 408 O ILE A 233 ? O ILE A 561 C 1 2 N ASN B 12 ? N ASN B 340 O SER B 17 ? O SER B 345 D 1 2 O GLU B 148 ? O GLU B 476 N VAL B 145 ? N VAL B 473 D 2 3 N GLY B 142 ? N GLY B 470 O ILE B 158 ? O ILE B 486 D 3 4 O MSE B 159 ? O MSE B 487 N ILE B 112 ? N ILE B 440 D 4 5 N THR B 115 ? N THR B 443 O ILE B 181 ? O ILE B 509 D 5 6 N VAL B 182 ? N VAL B 510 O VAL B 212 ? O VAL B 540 D 6 7 O LEU B 213 ? O LEU B 541 N ILE B 81 ? N ILE B 409 D 7 8 N ILE B 80 ? N ILE B 408 O ILE B 233 ? O ILE B 561 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MN A 1' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE MN B 2' AC3 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE ADP B 1' AC4 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CAC A 564' AC5 Software ? ? ? ? 14 'BINDING SITE FOR RESIDUE ADP A 565' AC6 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL B 564' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH I . ? HOH A 19 . ? 1_555 ? 2 AC1 6 HOH I . ? HOH A 20 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 21 . ? 1_555 ? 4 AC1 6 THR A 90 ? THR A 418 . ? 1_555 ? 5 AC1 6 GLU A 184 ? GLU A 512 . ? 1_555 ? 6 AC1 6 ADP E . ? ADP A 565 . ? 1_555 ? 7 AC2 7 ADP G . ? ADP B 1 . ? 1_555 ? 8 AC2 7 HOH J . ? HOH B 17 . ? 1_555 ? 9 AC2 7 HOH J . ? HOH B 18 . ? 1_555 ? 10 AC2 7 HOH J . ? HOH B 23 . ? 1_555 ? 11 AC2 7 THR B 90 ? THR B 418 . ? 1_555 ? 12 AC2 7 ASP B 183 ? ASP B 511 . ? 1_555 ? 13 AC2 7 GLU B 184 ? GLU B 512 . ? 1_555 ? 14 AC3 12 MN F . ? MN B 2 . ? 1_555 ? 15 AC3 12 HOH J . ? HOH B 17 . ? 1_555 ? 16 AC3 12 HOH J . ? HOH B 18 . ? 1_555 ? 17 AC3 12 THR B 85 ? THR B 413 . ? 1_555 ? 18 AC3 12 GLY B 86 ? GLY B 414 . ? 1_555 ? 19 AC3 12 CYS B 87 ? CYS B 415 . ? 1_555 ? 20 AC3 12 GLY B 88 ? GLY B 416 . ? 1_555 ? 21 AC3 12 LYS B 89 ? LYS B 417 . ? 1_555 ? 22 AC3 12 THR B 90 ? THR B 418 . ? 1_555 ? 23 AC3 12 THR B 91 ? THR B 419 . ? 1_555 ? 24 AC3 12 ARG B 128 ? ARG B 456 . ? 1_555 ? 25 AC3 12 HOH J . ? HOH B 565 . ? 1_555 ? 26 AC4 2 ASP A 47 ? ASP A 375 . ? 1_555 ? 27 AC4 2 ASP A 49 ? ASP A 377 . ? 1_555 ? 28 AC5 14 MN C . ? MN A 1 . ? 1_555 ? 29 AC5 14 HOH I . ? HOH A 13 . ? 1_555 ? 30 AC5 14 HOH I . ? HOH A 19 . ? 1_555 ? 31 AC5 14 HOH I . ? HOH A 20 . ? 1_555 ? 32 AC5 14 HOH I . ? HOH A 24 . ? 1_555 ? 33 AC5 14 THR A 85 ? THR A 413 . ? 1_555 ? 34 AC5 14 GLY A 86 ? GLY A 414 . ? 1_555 ? 35 AC5 14 CYS A 87 ? CYS A 415 . ? 1_555 ? 36 AC5 14 GLY A 88 ? GLY A 416 . ? 1_555 ? 37 AC5 14 LYS A 89 ? LYS A 417 . ? 1_555 ? 38 AC5 14 THR A 90 ? THR A 418 . ? 1_555 ? 39 AC5 14 THR A 91 ? THR A 419 . ? 1_555 ? 40 AC5 14 ARG A 128 ? ARG A 456 . ? 1_555 ? 41 AC5 14 PHE B 26 ? PHE B 354 . ? 2_654 ? 42 AC6 3 GLN B 75 ? GLN B 403 . ? 1_555 ? 43 AC6 3 SER B 77 ? SER B 405 . ? 1_555 ? 44 AC6 3 ARG B 210 ? ARG B 538 . ? 1_555 ? # _atom_sites.entry_id 3LLM _atom_sites.fract_transf_matrix[1][1] 0.008795 _atom_sites.fract_transf_matrix[1][2] 0.005078 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010156 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007060 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol AS C MN N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 329 329 VAL VAL A . n A 1 2 VAL 2 330 330 VAL VAL A . n A 1 3 PRO 3 331 331 PRO PRO A . n A 1 4 TRP 4 332 332 TRP TRP A . n A 1 5 SER 5 333 333 SER SER A . n A 1 6 PRO 6 334 334 PRO PRO A . n A 1 7 PRO 7 335 335 PRO PRO A . n A 1 8 GLN 8 336 336 GLN GLN A . n A 1 9 SER 9 337 337 SER SER A . n A 1 10 ASN 10 338 338 ASN ASN A . n A 1 11 TRP 11 339 339 TRP TRP A . n A 1 12 ASN 12 340 340 ASN ASN A . n A 1 13 PRO 13 341 341 PRO PRO A . n A 1 14 TRP 14 342 342 TRP TRP A . n A 1 15 THR 15 343 343 THR THR A . n A 1 16 SER 16 344 344 SER SER A . n A 1 17 SER 17 345 345 SER SER A . n A 1 18 ASN 18 346 346 ASN ASN A . n A 1 19 ILE 19 347 347 ILE ILE A . n A 1 20 ASP 20 348 348 ASP ASP A . n A 1 21 GLU 21 349 349 GLU GLU A . n A 1 22 GLY 22 350 350 GLY GLY A . n A 1 23 PRO 23 351 351 PRO PRO A . n A 1 24 LEU 24 352 352 LEU LEU A . n A 1 25 ALA 25 353 353 ALA ALA A . n A 1 26 PHE 26 354 354 PHE PHE A . n A 1 27 ALA 27 355 355 ALA ALA A . n A 1 28 THR 28 356 356 THR THR A . n A 1 29 PRO 29 357 357 PRO PRO A . n A 1 30 GLU 30 358 358 GLU GLU A . n A 1 31 GLN 31 359 359 GLN GLN A . n A 1 32 ILE 32 360 360 ILE ILE A . n A 1 33 SER 33 361 361 SER SER A . n A 1 34 MSE 34 362 362 MSE MSE A . n A 1 35 ASP 35 363 363 ASP ASP A . n A 1 36 LEU 36 364 364 LEU LEU A . n A 1 37 LYS 37 365 365 LYS LYS A . n A 1 38 ASN 38 366 366 ASN ASN A . n A 1 39 GLU 39 367 367 GLU GLU A . n A 1 40 LEU 40 368 368 LEU LEU A . n A 1 41 MSE 41 369 369 MSE MSE A . n A 1 42 TYR 42 370 370 TYR TYR A . n A 1 43 GLN 43 371 371 GLN GLN A . n A 1 44 LEU 44 372 372 LEU LEU A . n A 1 45 GLU 45 373 373 GLU GLU A . n A 1 46 GLN 46 374 374 GLN GLN A . n A 1 47 ASP 47 375 375 ASP ASP A . n A 1 48 HIS 48 376 376 HIS HIS A . n A 1 49 ASP 49 377 377 ASP ASP A . n A 1 50 LEU 50 378 378 LEU LEU A . n A 1 51 GLN 51 379 379 GLN GLN A . n A 1 52 ALA 52 380 380 ALA ALA A . n A 1 53 ILE 53 381 381 ILE ILE A . n A 1 54 LEU 54 382 382 LEU LEU A . n A 1 55 GLN 55 383 383 GLN GLN A . n A 1 56 GLU 56 384 384 GLU GLU A . n A 1 57 ARG 57 385 385 ARG ARG A . n A 1 58 GLU 58 386 386 GLU GLU A . n A 1 59 LEU 59 387 387 LEU LEU A . n A 1 60 LEU 60 388 388 LEU LEU A . n A 1 61 PRO 61 389 389 PRO PRO A . n A 1 62 VAL 62 390 390 VAL VAL A . n A 1 63 LYS 63 391 391 LYS LYS A . n A 1 64 LYS 64 392 392 LYS LYS A . n A 1 65 PHE 65 393 393 PHE PHE A . n A 1 66 GLU 66 394 394 GLU GLU A . n A 1 67 SER 67 395 395 SER SER A . n A 1 68 GLU 68 396 396 GLU GLU A . n A 1 69 ILE 69 397 397 ILE ILE A . n A 1 70 LEU 70 398 398 LEU LEU A . n A 1 71 GLU 71 399 399 GLU GLU A . n A 1 72 ALA 72 400 400 ALA ALA A . n A 1 73 ILE 73 401 401 ILE ILE A . n A 1 74 SER 74 402 402 SER SER A . n A 1 75 GLN 75 403 403 GLN GLN A . n A 1 76 ASN 76 404 404 ASN ASN A . n A 1 77 SER 77 405 405 SER SER A . n A 1 78 VAL 78 406 406 VAL VAL A . n A 1 79 VAL 79 407 407 VAL VAL A . n A 1 80 ILE 80 408 408 ILE ILE A . n A 1 81 ILE 81 409 409 ILE ILE A . n A 1 82 ARG 82 410 410 ARG ARG A . n A 1 83 GLY 83 411 411 GLY GLY A . n A 1 84 ALA 84 412 412 ALA ALA A . n A 1 85 THR 85 413 413 THR THR A . n A 1 86 GLY 86 414 414 GLY GLY A . n A 1 87 CYS 87 415 415 CYS CYS A . n A 1 88 GLY 88 416 416 GLY GLY A . n A 1 89 LYS 89 417 417 LYS LYS A . n A 1 90 THR 90 418 418 THR THR A . n A 1 91 THR 91 419 419 THR THR A . n A 1 92 GLN 92 420 420 GLN GLN A . n A 1 93 VAL 93 421 421 VAL VAL A . n A 1 94 PRO 94 422 422 PRO PRO A . n A 1 95 GLN 95 423 423 GLN GLN A . n A 1 96 PHE 96 424 424 PHE PHE A . n A 1 97 ILE 97 425 425 ILE ILE A . n A 1 98 LEU 98 426 426 LEU LEU A . n A 1 99 ASP 99 427 427 ASP ASP A . n A 1 100 ASP 100 428 428 ASP ASP A . n A 1 101 PHE 101 429 429 PHE PHE A . n A 1 102 ILE 102 430 430 ILE ILE A . n A 1 103 GLN 103 431 431 GLN GLN A . n A 1 104 ASN 104 432 432 ASN ASN A . n A 1 105 ASP 105 433 433 ASP ASP A . n A 1 106 ARG 106 434 434 ARG ARG A . n A 1 107 ALA 107 435 435 ALA ALA A . n A 1 108 ALA 108 436 436 ALA ALA A . n A 1 109 GLU 109 437 437 GLU GLU A . n A 1 110 CYS 110 438 438 CYS CYS A . n A 1 111 ASN 111 439 439 ASN ASN A . n A 1 112 ILE 112 440 440 ILE ILE A . n A 1 113 VAL 113 441 441 VAL VAL A . n A 1 114 VAL 114 442 442 VAL VAL A . n A 1 115 THR 115 443 443 THR THR A . n A 1 116 GLN 116 444 444 GLN GLN A . n A 1 117 PRO 117 445 445 PRO PRO A . n A 1 118 ARG 118 446 446 ARG ARG A . n A 1 119 ARG 119 447 447 ARG ARG A . n A 1 120 ILE 120 448 448 ILE ILE A . n A 1 121 SER 121 449 449 SER SER A . n A 1 122 ALA 122 450 450 ALA ALA A . n A 1 123 VAL 123 451 451 VAL VAL A . n A 1 124 SER 124 452 452 SER SER A . n A 1 125 VAL 125 453 453 VAL VAL A . n A 1 126 ALA 126 454 454 ALA ALA A . n A 1 127 GLU 127 455 455 GLU GLU A . n A 1 128 ARG 128 456 456 ARG ARG A . n A 1 129 VAL 129 457 457 VAL VAL A . n A 1 130 ALA 130 458 458 ALA ALA A . n A 1 131 PHE 131 459 459 PHE PHE A . n A 1 132 GLU 132 460 460 GLU GLU A . n A 1 133 ARG 133 461 461 ARG ARG A . n A 1 134 GLY 134 462 462 GLY GLY A . n A 1 135 GLU 135 463 463 GLU GLU A . n A 1 136 GLU 136 464 464 GLU GLU A . n A 1 137 PRO 137 465 465 PRO PRO A . n A 1 138 GLY 138 466 466 GLY GLY A . n A 1 139 LYS 139 467 467 LYS LYS A . n A 1 140 SER 140 468 468 SER SER A . n A 1 141 CYS 141 469 469 CYS CYS A . n A 1 142 GLY 142 470 470 GLY GLY A . n A 1 143 TYR 143 471 471 TYR TYR A . n A 1 144 SER 144 472 472 SER SER A . n A 1 145 VAL 145 473 473 VAL VAL A . n A 1 146 ARG 146 474 474 ARG ARG A . n A 1 147 PHE 147 475 475 PHE PHE A . n A 1 148 GLU 148 476 476 GLU GLU A . n A 1 149 SER 149 477 477 SER SER A . n A 1 150 ILE 150 478 478 ILE ILE A . n A 1 151 LEU 151 479 479 LEU LEU A . n A 1 152 PRO 152 480 480 PRO PRO A . n A 1 153 ARG 153 481 481 ARG ARG A . n A 1 154 PRO 154 482 482 PRO PRO A . n A 1 155 HIS 155 483 483 HIS HIS A . n A 1 156 ALA 156 484 484 ALA ALA A . n A 1 157 SER 157 485 485 SER SER A . n A 1 158 ILE 158 486 486 ILE ILE A . n A 1 159 MSE 159 487 487 MSE MSE A . n A 1 160 PHE 160 488 488 PHE PHE A . n A 1 161 CYS 161 489 489 CYS CYS A . n A 1 162 THR 162 490 490 THR THR A . n A 1 163 VAL 163 491 491 VAL VAL A . n A 1 164 GLY 164 492 492 GLY GLY A . n A 1 165 VAL 165 493 493 VAL VAL A . n A 1 166 LEU 166 494 494 LEU LEU A . n A 1 167 LEU 167 495 495 LEU LEU A . n A 1 168 ARG 168 496 496 ARG ARG A . n A 1 169 LYS 169 497 497 LYS LYS A . n A 1 170 LEU 170 498 498 LEU LEU A . n A 1 171 GLU 171 499 499 GLU GLU A . n A 1 172 ALA 172 500 500 ALA ALA A . n A 1 173 GLY 173 501 501 GLY GLY A . n A 1 174 ILE 174 502 502 ILE ILE A . n A 1 175 ARG 175 503 503 ARG ARG A . n A 1 176 GLY 176 504 504 GLY GLY A . n A 1 177 ILE 177 505 505 ILE ILE A . n A 1 178 SER 178 506 506 SER SER A . n A 1 179 HIS 179 507 507 HIS HIS A . n A 1 180 VAL 180 508 508 VAL VAL A . n A 1 181 ILE 181 509 509 ILE ILE A . n A 1 182 VAL 182 510 510 VAL VAL A . n A 1 183 ASP 183 511 511 ASP ASP A . n A 1 184 GLU 184 512 512 GLU GLU A . n A 1 185 ILE 185 513 513 ILE ILE A . n A 1 186 HIS 186 514 514 HIS HIS A . n A 1 187 GLU 187 515 515 GLU GLU A . n A 1 188 ARG 188 516 516 ARG ARG A . n A 1 189 ASP 189 517 517 ASP ASP A . n A 1 190 ILE 190 518 518 ILE ILE A . n A 1 191 ASN 191 519 519 ASN ASN A . n A 1 192 THR 192 520 520 THR THR A . n A 1 193 ASP 193 521 521 ASP ASP A . n A 1 194 PHE 194 522 522 PHE PHE A . n A 1 195 LEU 195 523 523 LEU LEU A . n A 1 196 LEU 196 524 524 LEU LEU A . n A 1 197 VAL 197 525 525 VAL VAL A . n A 1 198 VAL 198 526 526 VAL VAL A . n A 1 199 LEU 199 527 527 LEU LEU A . n A 1 200 ARG 200 528 528 ARG ARG A . n A 1 201 ASP 201 529 529 ASP ASP A . n A 1 202 VAL 202 530 530 VAL VAL A . n A 1 203 VAL 203 531 531 VAL VAL A . n A 1 204 GLN 204 532 532 GLN GLN A . n A 1 205 ALA 205 533 533 ALA ALA A . n A 1 206 TYR 206 534 534 TYR TYR A . n A 1 207 PRO 207 535 535 PRO PRO A . n A 1 208 GLU 208 536 536 GLU GLU A . n A 1 209 VAL 209 537 537 VAL VAL A . n A 1 210 ARG 210 538 538 ARG ARG A . n A 1 211 ILE 211 539 539 ILE ILE A . n A 1 212 VAL 212 540 540 VAL VAL A . n A 1 213 LEU 213 541 541 LEU LEU A . n A 1 214 MSE 214 542 542 MSE MSE A . n A 1 215 SER 215 543 543 SER SER A . n A 1 216 ALA 216 544 544 ALA ALA A . n A 1 217 THR 217 545 545 THR THR A . n A 1 218 ILE 218 546 546 ILE ILE A . n A 1 219 ASP 219 547 547 ASP ASP A . n A 1 220 THR 220 548 548 THR THR A . n A 1 221 SER 221 549 549 SER SER A . n A 1 222 MSE 222 550 550 MSE MSE A . n A 1 223 PHE 223 551 551 PHE PHE A . n A 1 224 CYS 224 552 552 CYS CYS A . n A 1 225 GLU 225 553 553 GLU GLU A . n A 1 226 TYR 226 554 554 TYR TYR A . n A 1 227 PHE 227 555 555 PHE PHE A . n A 1 228 PHE 228 556 556 PHE PHE A . n A 1 229 ASN 229 557 557 ASN ASN A . n A 1 230 CYS 230 558 558 CYS CYS A . n A 1 231 PRO 231 559 559 PRO PRO A . n A 1 232 ILE 232 560 560 ILE ILE A . n A 1 233 ILE 233 561 561 ILE ILE A . n A 1 234 GLU 234 562 562 GLU GLU A . n A 1 235 VAL 235 563 563 VAL VAL A . n B 1 1 VAL 1 329 329 VAL VAL B . n B 1 2 VAL 2 330 330 VAL VAL B . n B 1 3 PRO 3 331 331 PRO PRO B . n B 1 4 TRP 4 332 332 TRP TRP B . n B 1 5 SER 5 333 333 SER SER B . n B 1 6 PRO 6 334 334 PRO PRO B . n B 1 7 PRO 7 335 335 PRO PRO B . n B 1 8 GLN 8 336 336 GLN GLN B . n B 1 9 SER 9 337 337 SER SER B . n B 1 10 ASN 10 338 338 ASN ASN B . n B 1 11 TRP 11 339 339 TRP TRP B . n B 1 12 ASN 12 340 340 ASN ASN B . n B 1 13 PRO 13 341 341 PRO PRO B . n B 1 14 TRP 14 342 342 TRP TRP B . n B 1 15 THR 15 343 343 THR THR B . n B 1 16 SER 16 344 344 SER SER B . n B 1 17 SER 17 345 345 SER SER B . n B 1 18 ASN 18 346 346 ASN ASN B . n B 1 19 ILE 19 347 347 ILE ILE B . n B 1 20 ASP 20 348 348 ASP ASP B . n B 1 21 GLU 21 349 349 GLU GLU B . n B 1 22 GLY 22 350 350 GLY GLY B . n B 1 23 PRO 23 351 351 PRO PRO B . n B 1 24 LEU 24 352 352 LEU LEU B . n B 1 25 ALA 25 353 353 ALA ALA B . n B 1 26 PHE 26 354 354 PHE PHE B . n B 1 27 ALA 27 355 355 ALA ALA B . n B 1 28 THR 28 356 356 THR THR B . n B 1 29 PRO 29 357 357 PRO PRO B . n B 1 30 GLU 30 358 358 GLU GLU B . n B 1 31 GLN 31 359 359 GLN GLN B . n B 1 32 ILE 32 360 360 ILE ILE B . n B 1 33 SER 33 361 361 SER SER B . n B 1 34 MSE 34 362 362 MSE MSE B . n B 1 35 ASP 35 363 363 ASP ASP B . n B 1 36 LEU 36 364 364 LEU LEU B . n B 1 37 LYS 37 365 365 LYS LYS B . n B 1 38 ASN 38 366 366 ASN ASN B . n B 1 39 GLU 39 367 367 GLU GLU B . n B 1 40 LEU 40 368 368 LEU LEU B . n B 1 41 MSE 41 369 369 MSE MSE B . n B 1 42 TYR 42 370 370 TYR TYR B . n B 1 43 GLN 43 371 371 GLN GLN B . n B 1 44 LEU 44 372 372 LEU LEU B . n B 1 45 GLU 45 373 373 GLU GLU B . n B 1 46 GLN 46 374 374 GLN GLN B . n B 1 47 ASP 47 375 375 ASP ASP B . n B 1 48 HIS 48 376 376 HIS HIS B . n B 1 49 ASP 49 377 377 ASP ASP B . n B 1 50 LEU 50 378 378 LEU LEU B . n B 1 51 GLN 51 379 379 GLN GLN B . n B 1 52 ALA 52 380 380 ALA ALA B . n B 1 53 ILE 53 381 381 ILE ILE B . n B 1 54 LEU 54 382 382 LEU LEU B . n B 1 55 GLN 55 383 383 GLN GLN B . n B 1 56 GLU 56 384 384 GLU GLU B . n B 1 57 ARG 57 385 385 ARG ARG B . n B 1 58 GLU 58 386 386 GLU GLU B . n B 1 59 LEU 59 387 387 LEU LEU B . n B 1 60 LEU 60 388 388 LEU LEU B . n B 1 61 PRO 61 389 389 PRO PRO B . n B 1 62 VAL 62 390 390 VAL VAL B . n B 1 63 LYS 63 391 391 LYS LYS B . n B 1 64 LYS 64 392 392 LYS LYS B . n B 1 65 PHE 65 393 393 PHE PHE B . n B 1 66 GLU 66 394 394 GLU GLU B . n B 1 67 SER 67 395 395 SER SER B . n B 1 68 GLU 68 396 396 GLU GLU B . n B 1 69 ILE 69 397 397 ILE ILE B . n B 1 70 LEU 70 398 398 LEU LEU B . n B 1 71 GLU 71 399 399 GLU GLU B . n B 1 72 ALA 72 400 400 ALA ALA B . n B 1 73 ILE 73 401 401 ILE ILE B . n B 1 74 SER 74 402 402 SER SER B . n B 1 75 GLN 75 403 403 GLN GLN B . n B 1 76 ASN 76 404 404 ASN ASN B . n B 1 77 SER 77 405 405 SER SER B . n B 1 78 VAL 78 406 406 VAL VAL B . n B 1 79 VAL 79 407 407 VAL VAL B . n B 1 80 ILE 80 408 408 ILE ILE B . n B 1 81 ILE 81 409 409 ILE ILE B . n B 1 82 ARG 82 410 410 ARG ARG B . n B 1 83 GLY 83 411 411 GLY GLY B . n B 1 84 ALA 84 412 412 ALA ALA B . n B 1 85 THR 85 413 413 THR THR B . n B 1 86 GLY 86 414 414 GLY GLY B . n B 1 87 CYS 87 415 415 CYS CYS B . n B 1 88 GLY 88 416 416 GLY GLY B . n B 1 89 LYS 89 417 417 LYS LYS B . n B 1 90 THR 90 418 418 THR THR B . n B 1 91 THR 91 419 419 THR THR B . n B 1 92 GLN 92 420 420 GLN GLN B . n B 1 93 VAL 93 421 421 VAL VAL B . n B 1 94 PRO 94 422 422 PRO PRO B . n B 1 95 GLN 95 423 423 GLN GLN B . n B 1 96 PHE 96 424 424 PHE PHE B . n B 1 97 ILE 97 425 425 ILE ILE B . n B 1 98 LEU 98 426 426 LEU LEU B . n B 1 99 ASP 99 427 427 ASP ASP B . n B 1 100 ASP 100 428 428 ASP ASP B . n B 1 101 PHE 101 429 429 PHE PHE B . n B 1 102 ILE 102 430 430 ILE ILE B . n B 1 103 GLN 103 431 431 GLN GLN B . n B 1 104 ASN 104 432 432 ASN ASN B . n B 1 105 ASP 105 433 433 ASP ASP B . n B 1 106 ARG 106 434 434 ARG ARG B . n B 1 107 ALA 107 435 435 ALA ALA B . n B 1 108 ALA 108 436 436 ALA ALA B . n B 1 109 GLU 109 437 437 GLU GLU B . n B 1 110 CYS 110 438 438 CYS CYS B . n B 1 111 ASN 111 439 439 ASN ASN B . n B 1 112 ILE 112 440 440 ILE ILE B . n B 1 113 VAL 113 441 441 VAL VAL B . n B 1 114 VAL 114 442 442 VAL VAL B . n B 1 115 THR 115 443 443 THR THR B . n B 1 116 GLN 116 444 444 GLN GLN B . n B 1 117 PRO 117 445 445 PRO PRO B . n B 1 118 ARG 118 446 446 ARG ARG B . n B 1 119 ARG 119 447 447 ARG ARG B . n B 1 120 ILE 120 448 448 ILE ILE B . n B 1 121 SER 121 449 449 SER SER B . n B 1 122 ALA 122 450 450 ALA ALA B . n B 1 123 VAL 123 451 451 VAL VAL B . n B 1 124 SER 124 452 452 SER SER B . n B 1 125 VAL 125 453 453 VAL VAL B . n B 1 126 ALA 126 454 454 ALA ALA B . n B 1 127 GLU 127 455 455 GLU GLU B . n B 1 128 ARG 128 456 456 ARG ARG B . n B 1 129 VAL 129 457 457 VAL VAL B . n B 1 130 ALA 130 458 458 ALA ALA B . n B 1 131 PHE 131 459 459 PHE PHE B . n B 1 132 GLU 132 460 460 GLU GLU B . n B 1 133 ARG 133 461 461 ARG ARG B . n B 1 134 GLY 134 462 462 GLY GLY B . n B 1 135 GLU 135 463 463 GLU GLU B . n B 1 136 GLU 136 464 464 GLU GLU B . n B 1 137 PRO 137 465 465 PRO PRO B . n B 1 138 GLY 138 466 466 GLY GLY B . n B 1 139 LYS 139 467 467 LYS LYS B . n B 1 140 SER 140 468 468 SER SER B . n B 1 141 CYS 141 469 469 CYS CYS B . n B 1 142 GLY 142 470 470 GLY GLY B . n B 1 143 TYR 143 471 471 TYR TYR B . n B 1 144 SER 144 472 472 SER SER B . n B 1 145 VAL 145 473 473 VAL VAL B . n B 1 146 ARG 146 474 474 ARG ARG B . n B 1 147 PHE 147 475 475 PHE PHE B . n B 1 148 GLU 148 476 476 GLU GLU B . n B 1 149 SER 149 477 477 SER SER B . n B 1 150 ILE 150 478 478 ILE ILE B . n B 1 151 LEU 151 479 479 LEU LEU B . n B 1 152 PRO 152 480 480 PRO PRO B . n B 1 153 ARG 153 481 481 ARG ARG B . n B 1 154 PRO 154 482 482 PRO PRO B . n B 1 155 HIS 155 483 483 HIS HIS B . n B 1 156 ALA 156 484 484 ALA ALA B . n B 1 157 SER 157 485 485 SER SER B . n B 1 158 ILE 158 486 486 ILE ILE B . n B 1 159 MSE 159 487 487 MSE MSE B . n B 1 160 PHE 160 488 488 PHE PHE B . n B 1 161 CYS 161 489 489 CYS CYS B . n B 1 162 THR 162 490 490 THR THR B . n B 1 163 VAL 163 491 491 VAL VAL B . n B 1 164 GLY 164 492 492 GLY GLY B . n B 1 165 VAL 165 493 493 VAL VAL B . n B 1 166 LEU 166 494 494 LEU LEU B . n B 1 167 LEU 167 495 495 LEU LEU B . n B 1 168 ARG 168 496 496 ARG ARG B . n B 1 169 LYS 169 497 497 LYS LYS B . n B 1 170 LEU 170 498 498 LEU LEU B . n B 1 171 GLU 171 499 499 GLU GLU B . n B 1 172 ALA 172 500 500 ALA ALA B . n B 1 173 GLY 173 501 501 GLY GLY B . n B 1 174 ILE 174 502 502 ILE ILE B . n B 1 175 ARG 175 503 503 ARG ARG B . n B 1 176 GLY 176 504 504 GLY GLY B . n B 1 177 ILE 177 505 505 ILE ILE B . n B 1 178 SER 178 506 506 SER SER B . n B 1 179 HIS 179 507 507 HIS HIS B . n B 1 180 VAL 180 508 508 VAL VAL B . n B 1 181 ILE 181 509 509 ILE ILE B . n B 1 182 VAL 182 510 510 VAL VAL B . n B 1 183 ASP 183 511 511 ASP ASP B . n B 1 184 GLU 184 512 512 GLU GLU B . n B 1 185 ILE 185 513 513 ILE ILE B . n B 1 186 HIS 186 514 514 HIS HIS B . n B 1 187 GLU 187 515 515 GLU GLU B . n B 1 188 ARG 188 516 516 ARG ARG B . n B 1 189 ASP 189 517 517 ASP ASP B . n B 1 190 ILE 190 518 518 ILE ILE B . n B 1 191 ASN 191 519 519 ASN ASN B . n B 1 192 THR 192 520 520 THR THR B . n B 1 193 ASP 193 521 521 ASP ASP B . n B 1 194 PHE 194 522 522 PHE PHE B . n B 1 195 LEU 195 523 523 LEU LEU B . n B 1 196 LEU 196 524 524 LEU LEU B . n B 1 197 VAL 197 525 525 VAL VAL B . n B 1 198 VAL 198 526 526 VAL VAL B . n B 1 199 LEU 199 527 527 LEU LEU B . n B 1 200 ARG 200 528 528 ARG ARG B . n B 1 201 ASP 201 529 529 ASP ASP B . n B 1 202 VAL 202 530 530 VAL VAL B . n B 1 203 VAL 203 531 531 VAL VAL B . n B 1 204 GLN 204 532 532 GLN GLN B . n B 1 205 ALA 205 533 533 ALA ALA B . n B 1 206 TYR 206 534 534 TYR TYR B . n B 1 207 PRO 207 535 535 PRO PRO B . n B 1 208 GLU 208 536 536 GLU GLU B . n B 1 209 VAL 209 537 537 VAL VAL B . n B 1 210 ARG 210 538 538 ARG ARG B . n B 1 211 ILE 211 539 539 ILE ILE B . n B 1 212 VAL 212 540 540 VAL VAL B . n B 1 213 LEU 213 541 541 LEU LEU B . n B 1 214 MSE 214 542 542 MSE MSE B . n B 1 215 SER 215 543 543 SER SER B . n B 1 216 ALA 216 544 544 ALA ALA B . n B 1 217 THR 217 545 545 THR THR B . n B 1 218 ILE 218 546 546 ILE ILE B . n B 1 219 ASP 219 547 547 ASP ASP B . n B 1 220 THR 220 548 548 THR THR B . n B 1 221 SER 221 549 549 SER SER B . n B 1 222 MSE 222 550 550 MSE MSE B . n B 1 223 PHE 223 551 551 PHE PHE B . n B 1 224 CYS 224 552 552 CYS CYS B . n B 1 225 GLU 225 553 553 GLU GLU B . n B 1 226 TYR 226 554 554 TYR TYR B . n B 1 227 PHE 227 555 555 PHE PHE B . n B 1 228 PHE 228 556 556 PHE PHE B . n B 1 229 ASN 229 557 557 ASN ASN B . n B 1 230 CYS 230 558 558 CYS CYS B . n B 1 231 PRO 231 559 559 PRO PRO B . n B 1 232 ILE 232 560 560 ILE ILE B . n B 1 233 ILE 233 561 561 ILE ILE B . n B 1 234 GLU 234 562 562 GLU GLU B . n B 1 235 VAL 235 563 563 VAL VAL B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 34 A MSE 362 ? MET SELENOMETHIONINE 2 A MSE 41 A MSE 369 ? MET SELENOMETHIONINE 3 A MSE 159 A MSE 487 ? MET SELENOMETHIONINE 4 A MSE 214 A MSE 542 ? MET SELENOMETHIONINE 5 A MSE 222 A MSE 550 ? MET SELENOMETHIONINE 6 B MSE 34 B MSE 362 ? MET SELENOMETHIONINE 7 B MSE 41 B MSE 369 ? MET SELENOMETHIONINE 8 B MSE 159 B MSE 487 ? MET SELENOMETHIONINE 9 B MSE 214 B MSE 542 ? MET SELENOMETHIONINE 10 B MSE 222 B MSE 550 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3140 ? 1 MORE -37 ? 1 'SSA (A^2)' 21350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? J HOH . ? B HOH 17 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 18 ? 1_555 93.3 ? 2 O ? J HOH . ? B HOH 17 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 OE2 ? B GLU 184 ? B GLU 512 ? 1_555 87.7 ? 3 O ? J HOH . ? B HOH 18 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 OE2 ? B GLU 184 ? B GLU 512 ? 1_555 88.5 ? 4 O ? J HOH . ? B HOH 17 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 OG1 ? B THR 90 ? B THR 418 ? 1_555 92.4 ? 5 O ? J HOH . ? B HOH 18 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 OG1 ? B THR 90 ? B THR 418 ? 1_555 171.9 ? 6 OE2 ? B GLU 184 ? B GLU 512 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 OG1 ? B THR 90 ? B THR 418 ? 1_555 97.5 ? 7 O ? J HOH . ? B HOH 17 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O1B ? G ADP . ? B ADP 1 ? 1_555 87.8 ? 8 O ? J HOH . ? B HOH 18 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O1B ? G ADP . ? B ADP 1 ? 1_555 88.0 ? 9 OE2 ? B GLU 184 ? B GLU 512 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O1B ? G ADP . ? B ADP 1 ? 1_555 174.1 ? 10 OG1 ? B THR 90 ? B THR 418 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O1B ? G ADP . ? B ADP 1 ? 1_555 86.4 ? 11 O ? J HOH . ? B HOH 17 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 23 ? 1_555 163.9 ? 12 O ? J HOH . ? B HOH 18 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 23 ? 1_555 80.9 ? 13 OE2 ? B GLU 184 ? B GLU 512 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 23 ? 1_555 77.3 ? 14 OG1 ? B THR 90 ? B THR 418 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 23 ? 1_555 95.2 ? 15 O1B ? G ADP . ? B ADP 1 ? 1_555 MN ? F MN . ? B MN 2 ? 1_555 O ? J HOH . ? B HOH 23 ? 1_555 106.8 ? 16 O ? I HOH . ? A HOH 21 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 O3B ? E ADP . ? A ADP 565 ? 1_555 105.3 ? 17 O ? I HOH . ? A HOH 21 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 OE2 ? A GLU 184 ? A GLU 512 ? 1_555 82.5 ? 18 O3B ? E ADP . ? A ADP 565 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 OE2 ? A GLU 184 ? A GLU 512 ? 1_555 169.2 ? 19 O ? I HOH . ? A HOH 21 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 OG1 ? A THR 90 ? A THR 418 ? 1_555 86.1 ? 20 O3B ? E ADP . ? A ADP 565 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 OG1 ? A THR 90 ? A THR 418 ? 1_555 87.1 ? 21 OE2 ? A GLU 184 ? A GLU 512 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 OG1 ? A THR 90 ? A THR 418 ? 1_555 86.0 ? 22 O ? I HOH . ? A HOH 21 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 89.9 ? 23 O3B ? E ADP . ? A ADP 565 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 98.7 ? 24 OE2 ? A GLU 184 ? A GLU 512 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 88.5 ? 25 OG1 ? A THR 90 ? A THR 418 ? 1_555 MN ? C MN . ? A MN 1 ? 1_555 O ? I HOH . ? A HOH 20 ? 1_555 173.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-12 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALA 3.3.15 2009/03/31 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 2 REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 GDA . ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 SHARP . ? ? ? ? phasing ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 MN _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 MN _pdbx_validate_close_contact.auth_seq_id_1 1 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 19 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.60 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 CYS _pdbx_validate_rmsd_bond.auth_seq_id_1 469 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 SG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 CYS _pdbx_validate_rmsd_bond.auth_seq_id_2 469 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.697 _pdbx_validate_rmsd_bond.bond_target_value 1.812 _pdbx_validate_rmsd_bond.bond_deviation -0.115 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.016 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 467 ? ? -118.45 -92.38 2 1 PHE A 475 ? ? 95.91 -17.65 3 1 PHE A 555 ? ? -107.04 46.64 4 1 GLN B 374 ? ? -128.79 -51.19 5 1 LYS B 467 ? ? -102.31 -85.86 6 1 PHE B 475 ? ? 91.75 -12.91 7 1 PHE B 555 ? ? -108.50 41.04 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 474 ? CG ? A ARG 146 CG 2 1 Y 1 A ARG 474 ? CD ? A ARG 146 CD 3 1 Y 1 A ARG 474 ? NE ? A ARG 146 NE 4 1 Y 1 A ARG 474 ? CZ ? A ARG 146 CZ 5 1 Y 1 A ARG 474 ? NH1 ? A ARG 146 NH1 6 1 Y 1 A ARG 474 ? NH2 ? A ARG 146 NH2 7 1 Y 1 B GLU 349 ? CD ? B GLU 21 CD 8 1 Y 1 B GLU 349 ? OE1 ? B GLU 21 OE1 9 1 Y 1 B GLU 349 ? OE2 ? B GLU 21 OE2 10 1 Y 1 B GLU 367 ? CD ? B GLU 39 CD 11 1 Y 1 B GLU 367 ? OE1 ? B GLU 39 OE1 12 1 Y 1 B GLU 367 ? OE2 ? B GLU 39 OE2 13 1 Y 1 B GLN 371 ? CG ? B GLN 43 CG 14 1 Y 1 B GLN 371 ? CD ? B GLN 43 CD 15 1 Y 1 B GLN 371 ? OE1 ? B GLN 43 OE1 16 1 Y 1 B GLN 371 ? NE2 ? B GLN 43 NE2 17 1 Y 1 B GLU 373 ? CG ? B GLU 45 CG 18 1 Y 1 B GLU 373 ? CD ? B GLU 45 CD 19 1 Y 1 B GLU 373 ? OE1 ? B GLU 45 OE1 20 1 Y 1 B GLU 373 ? OE2 ? B GLU 45 OE2 21 1 Y 1 B GLN 374 ? CD ? B GLN 46 CD 22 1 Y 1 B GLN 374 ? OE1 ? B GLN 46 OE1 23 1 Y 1 B GLN 374 ? NE2 ? B GLN 46 NE2 24 1 Y 1 B HIS 376 ? CG ? B HIS 48 CG 25 1 Y 1 B HIS 376 ? ND1 ? B HIS 48 ND1 26 1 Y 1 B HIS 376 ? CD2 ? B HIS 48 CD2 27 1 Y 1 B HIS 376 ? CE1 ? B HIS 48 CE1 28 1 Y 1 B HIS 376 ? NE2 ? B HIS 48 NE2 29 1 Y 1 B GLN 379 ? CD ? B GLN 51 CD 30 1 Y 1 B GLN 379 ? OE1 ? B GLN 51 OE1 31 1 Y 1 B GLN 379 ? NE2 ? B GLN 51 NE2 32 1 Y 1 B GLN 383 ? CG ? B GLN 55 CG 33 1 Y 1 B GLN 383 ? CD ? B GLN 55 CD 34 1 Y 1 B GLN 383 ? OE1 ? B GLN 55 OE1 35 1 Y 1 B GLN 383 ? NE2 ? B GLN 55 NE2 36 1 Y 1 B GLU 384 ? CD ? B GLU 56 CD 37 1 Y 1 B GLU 384 ? OE1 ? B GLU 56 OE1 38 1 Y 1 B GLU 384 ? OE2 ? B GLU 56 OE2 39 1 Y 1 B ARG 496 ? CD ? B ARG 168 CD 40 1 Y 1 B ARG 496 ? NE ? B ARG 168 NE 41 1 Y 1 B ARG 496 ? CZ ? B ARG 168 CZ 42 1 Y 1 B ARG 496 ? NH1 ? B ARG 168 NH1 43 1 Y 1 B ARG 496 ? NH2 ? B ARG 168 NH2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MANGANESE (II) ION' MN 3 'CACODYLATE ION' CAC 4 "ADENOSINE-5'-DIPHOSPHATE" ADP 5 GLYCEROL GOL 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN 1 1 1 MN MN A . D 3 CAC 1 564 1 CAC CAC A . E 4 ADP 1 565 1 ADP ADP A . F 2 MN 1 2 2 MN MN B . G 4 ADP 1 1 1 ADP ADP B . H 5 GOL 1 564 1 GOL GOL B . I 6 HOH 1 2 2 HOH HOH A . I 6 HOH 2 4 4 HOH HOH A . I 6 HOH 3 5 5 HOH HOH A . I 6 HOH 4 8 8 HOH HOH A . I 6 HOH 5 9 9 HOH HOH A . I 6 HOH 6 10 10 HOH HOH A . I 6 HOH 7 11 11 HOH HOH A . I 6 HOH 8 13 13 HOH HOH A . I 6 HOH 9 14 14 HOH HOH A . I 6 HOH 10 15 15 HOH HOH A . I 6 HOH 11 19 19 HOH HOH A . I 6 HOH 12 20 20 HOH HOH A . I 6 HOH 13 21 21 HOH HOH A . I 6 HOH 14 24 24 HOH HOH A . I 6 HOH 15 25 25 HOH HOH A . I 6 HOH 16 27 27 HOH HOH A . J 6 HOH 1 3 3 HOH HOH B . J 6 HOH 2 6 6 HOH HOH B . J 6 HOH 3 7 7 HOH HOH B . J 6 HOH 4 12 12 HOH HOH B . J 6 HOH 5 16 16 HOH HOH B . J 6 HOH 6 17 17 HOH HOH B . J 6 HOH 7 18 18 HOH HOH B . J 6 HOH 8 22 22 HOH HOH B . J 6 HOH 9 23 23 HOH HOH B . J 6 HOH 10 26 26 HOH HOH B . J 6 HOH 11 565 1 HOH HOH B . #