HEADER LYASE 29-JAN-10 3LM7 TITLE CRYSTAL STRUCTURE OF DUF1341 REPRESENTATIVE, FROM YERSINIA TITLE 2 ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE 4-HYDROXY-2-OXOGLUTARATE ALDOLASE / 2- COMPND 3 DEHYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 393305; SOURCE 4 STRAIN: ENTEROCOLITICA 8081; SOURCE 5 GENE: YE3779; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19B KEYWDS PUTATIVE 4-HYDROXY-OXOGLUTARATE ALDOLASE / 2-DEHYDRO-3- KEYWDS 2 DEOXYPHOSPHOGLUCONATE ALDOLASE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, MCSG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JOACHIMIAK,N.E.C.DUKE,B.FELDMANN,R.WU,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 1 23-FEB-10 3LM7 0 JRNL AUTH A.JOACHIMIAK,N.E.C.DUKE,B.FELDMANN,R.WU JRNL TITL CRYSTAL STRUCTURE OF DUF1341 REPRESENTATIVE, FROM JRNL TITL 2 YERSINIA ENTEROCOLITICA SUBSP. ENTEROCOLITICA 8081 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 36623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.507 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3785 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5142 ; 1.858 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.096 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;33.626 ;25.425 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;13.956 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 607 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2824 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2455 ; 1.156 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3971 ; 1.902 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1330 ; 3.323 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1171 ; 5.300 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 3LM7 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB057449. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915, 0.97942 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 702493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27200 REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 FOR SHELL : 6.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15M POTASSIUM BROMIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2000 (HAMPTON INDEX #96), REMARK 280 PH 7.60, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.97350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.55950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.22650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.55950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.97350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.22650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS THE DIMER IN REMARK 300 ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -49.94700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A -2 O HOH A 565 1.81 REMARK 500 O HOH B 265 O HOH B 705 1.95 REMARK 500 O HOH A 571 O HOH A 572 1.95 REMARK 500 O HOH A 466 O HOH A 563 2.00 REMARK 500 O HOH B 461 O HOH B 685 2.01 REMARK 500 O HOH B 606 O HOH B 607 2.03 REMARK 500 O HOH A 565 O HOH A 700 2.05 REMARK 500 O HOH A 381 O HOH A 664 2.12 REMARK 500 O HOH A 561 O HOH A 562 2.15 REMARK 500 OE1 GLN A 136 O HOH A 472 2.15 REMARK 500 O HOH A 544 O HOH A 545 2.16 REMARK 500 CB ASN A 6 O HOH A 563 2.16 REMARK 500 O HOH B 553 O HOH B 554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH A 717 4555 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 122 CE LYS A 122 NZ 0.157 REMARK 500 GLU B 232 CD GLU B 232 OE1 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 73 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP A 73 CB - CG - OD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 9 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 25 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 25 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 55 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 0 18.87 58.16 REMARK 500 TYR A 218 -110.78 -118.41 REMARK 500 ALA B 64 59.87 -69.80 REMARK 500 TYR B 218 -107.44 -119.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 401 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 208 O REMARK 620 2 ALA A 208 O 96.4 REMARK 620 3 HOH A 650 O 149.9 97.7 REMARK 620 4 HOH B 400 O 82.8 90.8 123.3 REMARK 620 5 HOH A 552 O 91.1 84.9 64.0 172.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38723.2 RELATED DB: TARGETDB DBREF 3LM7 A 1 246 UNP A1JRF3 A1JRF3_YERE8 1 246 DBREF 3LM7 B 1 246 UNP A1JRF3 A1JRF3_YERE8 1 246 SEQADV 3LM7 SER A -2 UNP A1JRF3 EXPRESSION TAG SEQADV 3LM7 ASN A -1 UNP A1JRF3 EXPRESSION TAG SEQADV 3LM7 ALA A 0 UNP A1JRF3 EXPRESSION TAG SEQADV 3LM7 SER B -2 UNP A1JRF3 EXPRESSION TAG SEQADV 3LM7 ASN B -1 UNP A1JRF3 EXPRESSION TAG SEQADV 3LM7 ALA B 0 UNP A1JRF3 EXPRESSION TAG SEQRES 1 A 249 SER ASN ALA MSE LYS LEU THR PRO ASN TYR TYR ARG ASP SEQRES 2 A 249 ARG VAL CYS LEU ASN VAL LEU ALA GLY SER LYS ASP ASN SEQRES 3 A 249 ALA ARG ALA ILE TYR GLN ALA ALA GLU GLY HIS VAL LEU SEQRES 4 A 249 VAL GLY VAL LEU SER LYS ASN TYR PRO ASP VAL ASP SER SEQRES 5 A 249 ALA VAL LYS ASP MSE ARG GLU TYR ALA ALA LEU ILE ASP SEQRES 6 A 249 ASN ALA LEU SER VAL GLY LEU GLY ALA GLY ASP PRO ARG SEQRES 7 A 249 GLN SER VAL MSE VAL SER GLN ILE SER GLN GLN VAL GLN SEQRES 8 A 249 PRO GLN HIS VAL ASN GLN VAL PHE THR GLY VAL GLY ALA SEQRES 9 A 249 SER ARG ALA LEU LEU GLY GLN HIS ASP THR VAL VAL ASN SEQRES 10 A 249 GLY LEU ILE SER PRO THR GLY LYS VAL GLY TYR VAL LYS SEQRES 11 A 249 ILE SER THR GLY PRO LEU SER SER GLN GLN LYS ASP ALA SEQRES 12 A 249 ILE VAL PRO VAL THR THR ALA ILE ALA MSE LEU LYS ASP SEQRES 13 A 249 MSE GLY GLY SER SER VAL LYS PHE PHE PRO MSE ASN GLY SEQRES 14 A 249 LEU ASP SER ILE ASP GLU TYR ARG PHE VAL ALA GLU ALA SEQRES 15 A 249 CYS ALA ALA THR GLY PHE TRP LEU GLU PRO THR GLY GLY SEQRES 16 A 249 ILE ASP LEU ASP ASN PHE GLU GLN ILE VAL GLN ILE ALA SEQRES 17 A 249 LEU ASP ALA GLY VAL THR LYS VAL ILE PRO HIS ILE TYR SEQRES 18 A 249 SER SER ILE ILE ASP SER LYS THR GLY ASN THR ARG PRO SEQRES 19 A 249 GLU ASP VAL LYS THR LEU LEU ASP ILE VAL LYS LYS ILE SEQRES 20 A 249 VAL GLN SEQRES 1 B 249 SER ASN ALA MSE LYS LEU THR PRO ASN TYR TYR ARG ASP SEQRES 2 B 249 ARG VAL CYS LEU ASN VAL LEU ALA GLY SER LYS ASP ASN SEQRES 3 B 249 ALA ARG ALA ILE TYR GLN ALA ALA GLU GLY HIS VAL LEU SEQRES 4 B 249 VAL GLY VAL LEU SER LYS ASN TYR PRO ASP VAL ASP SER SEQRES 5 B 249 ALA VAL LYS ASP MSE ARG GLU TYR ALA ALA LEU ILE ASP SEQRES 6 B 249 ASN ALA LEU SER VAL GLY LEU GLY ALA GLY ASP PRO ARG SEQRES 7 B 249 GLN SER VAL MSE VAL SER GLN ILE SER GLN GLN VAL GLN SEQRES 8 B 249 PRO GLN HIS VAL ASN GLN VAL PHE THR GLY VAL GLY ALA SEQRES 9 B 249 SER ARG ALA LEU LEU GLY GLN HIS ASP THR VAL VAL ASN SEQRES 10 B 249 GLY LEU ILE SER PRO THR GLY LYS VAL GLY TYR VAL LYS SEQRES 11 B 249 ILE SER THR GLY PRO LEU SER SER GLN GLN LYS ASP ALA SEQRES 12 B 249 ILE VAL PRO VAL THR THR ALA ILE ALA MSE LEU LYS ASP SEQRES 13 B 249 MSE GLY GLY SER SER VAL LYS PHE PHE PRO MSE ASN GLY SEQRES 14 B 249 LEU ASP SER ILE ASP GLU TYR ARG PHE VAL ALA GLU ALA SEQRES 15 B 249 CYS ALA ALA THR GLY PHE TRP LEU GLU PRO THR GLY GLY SEQRES 16 B 249 ILE ASP LEU ASP ASN PHE GLU GLN ILE VAL GLN ILE ALA SEQRES 17 B 249 LEU ASP ALA GLY VAL THR LYS VAL ILE PRO HIS ILE TYR SEQRES 18 B 249 SER SER ILE ILE ASP SER LYS THR GLY ASN THR ARG PRO SEQRES 19 B 249 GLU ASP VAL LYS THR LEU LEU ASP ILE VAL LYS LYS ILE SEQRES 20 B 249 VAL GLN MODRES 3LM7 MSE A 1 MET SELENOMETHIONINE MODRES 3LM7 MSE A 54 MET SELENOMETHIONINE MODRES 3LM7 MSE A 79 MET SELENOMETHIONINE MODRES 3LM7 MSE A 150 MET SELENOMETHIONINE MODRES 3LM7 MSE A 154 MET SELENOMETHIONINE MODRES 3LM7 MSE A 164 MET SELENOMETHIONINE MODRES 3LM7 MSE B 1 MET SELENOMETHIONINE MODRES 3LM7 MSE B 54 MET SELENOMETHIONINE MODRES 3LM7 MSE B 79 MET SELENOMETHIONINE MODRES 3LM7 MSE B 150 MET SELENOMETHIONINE MODRES 3LM7 MSE B 154 MET SELENOMETHIONINE MODRES 3LM7 MSE B 164 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 54 8 HET MSE A 79 8 HET MSE A 150 8 HET MSE A 154 8 HET MSE A 164 8 HET MSE B 1 8 HET MSE B 54 8 HET MSE B 79 8 HET MSE B 150 8 HET MSE B 154 8 HET MSE B 164 8 HET BR A 301 1 HET BR B 302 1 HET K B 401 1 HETNAM MSE SELENOMETHIONINE HETNAM BR BROMIDE ION HETNAM K POTASSIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 BR 2(BR 1-) FORMUL 5 K K 1+ FORMUL 6 HOH *720(H2 O) HELIX 1 1 TYR A 7 ARG A 11 5 5 HELIX 2 2 SER A 20 ALA A 31 1 12 HELIX 3 3 LYS A 42 TYR A 44 5 3 HELIX 4 4 ASP A 46 ILE A 61 1 16 HELIX 5 5 ASP A 73 ARG A 75 5 3 HELIX 6 6 GLN A 76 GLN A 88 1 13 HELIX 7 7 VAL A 95 THR A 97 5 3 HELIX 8 8 GLY A 98 GLY A 107 1 10 HELIX 9 9 LEU A 133 GLN A 137 5 5 HELIX 10 10 VAL A 144 MSE A 154 1 11 HELIX 11 11 SER A 169 THR A 183 1 15 HELIX 12 12 ASN A 197 GLY A 209 1 13 HELIX 13 13 TYR A 218 ILE A 222 5 5 HELIX 14 14 ARG A 230 VAL A 245 1 16 HELIX 15 15 TYR B 7 ARG B 11 5 5 HELIX 16 16 SER B 20 ALA B 31 1 12 HELIX 17 17 LYS B 42 TYR B 44 5 3 HELIX 18 18 ASP B 46 ILE B 61 1 16 HELIX 19 19 ASP B 73 ARG B 75 5 3 HELIX 20 20 GLN B 76 GLN B 88 1 13 HELIX 21 21 VAL B 95 THR B 97 5 3 HELIX 22 22 GLY B 98 GLY B 107 1 10 HELIX 23 23 LEU B 133 GLN B 137 5 5 HELIX 24 24 VAL B 144 MSE B 154 1 11 HELIX 25 25 SER B 169 THR B 183 1 15 HELIX 26 26 ASN B 197 GLY B 209 1 13 HELIX 27 27 TYR B 218 ILE B 222 5 5 HELIX 28 28 ARG B 230 VAL B 245 1 16 SHEET 1 A 7 LEU A 14 LEU A 17 0 SHEET 2 A 7 VAL A 35 LEU A 40 1 O GLY A 38 N VAL A 16 SHEET 3 A 7 LEU A 65 GLY A 68 1 O GLY A 68 N VAL A 39 SHEET 4 A 7 HIS A 91 VAL A 92 1 O HIS A 91 N VAL A 67 SHEET 5 A 7 VAL A 112 ILE A 117 1 O VAL A 112 N VAL A 92 SHEET 6 A 7 SER A 158 PHE A 161 1 O LYS A 160 N GLY A 115 SHEET 7 A 7 TRP A 186 PRO A 189 1 O GLU A 188 N VAL A 159 SHEET 1 B 2 TYR A 125 LYS A 127 0 SHEET 2 B 2 ILE A 141 PRO A 143 -1 O VAL A 142 N VAL A 126 SHEET 1 C 7 LEU B 14 LEU B 17 0 SHEET 2 C 7 VAL B 35 LEU B 40 1 O GLY B 38 N VAL B 16 SHEET 3 C 7 LEU B 65 GLY B 68 1 O GLY B 68 N VAL B 39 SHEET 4 C 7 HIS B 91 VAL B 92 1 O HIS B 91 N VAL B 67 SHEET 5 C 7 VAL B 112 PRO B 119 1 O ASN B 114 N VAL B 92 SHEET 6 C 7 TYR B 125 LYS B 127 -1 O LYS B 127 N SER B 118 SHEET 7 C 7 ILE B 141 PRO B 143 -1 O VAL B 142 N VAL B 126 SHEET 1 D 7 LEU B 14 LEU B 17 0 SHEET 2 D 7 VAL B 35 LEU B 40 1 O GLY B 38 N VAL B 16 SHEET 3 D 7 LEU B 65 GLY B 68 1 O GLY B 68 N VAL B 39 SHEET 4 D 7 HIS B 91 VAL B 92 1 O HIS B 91 N VAL B 67 SHEET 5 D 7 VAL B 112 PRO B 119 1 O ASN B 114 N VAL B 92 SHEET 6 D 7 SER B 158 PHE B 161 1 O LYS B 160 N GLY B 115 SHEET 7 D 7 TRP B 186 PRO B 189 1 O GLU B 188 N VAL B 159 LINK C ALA A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C ASP A 53 N MSE A 54 1555 1555 1.34 LINK C MSE A 54 N ARG A 55 1555 1555 1.33 LINK C VAL A 78 N MSE A 79 1555 1555 1.32 LINK C MSE A 79 N VAL A 80 1555 1555 1.34 LINK C ALA A 149 N MSE A 150 1555 1555 1.34 LINK C MSE A 150 N LEU A 151 1555 1555 1.34 LINK C ASP A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N GLY A 155 1555 1555 1.33 LINK C PRO A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N ASN A 165 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ASP B 53 N MSE B 54 1555 1555 1.33 LINK C MSE B 54 N ARG B 55 1555 1555 1.34 LINK C VAL B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N VAL B 80 1555 1555 1.34 LINK C ALA B 149 N MSE B 150 1555 1555 1.32 LINK C MSE B 150 N LEU B 151 1555 1555 1.34 LINK C ASP B 153 N MSE B 154 1555 1555 1.33 LINK C MSE B 154 N GLY B 155 1555 1555 1.32 LINK C PRO B 163 N MSE B 164 1555 1555 1.34 LINK C MSE B 164 N ASN B 165 1555 1555 1.33 LINK O ALA B 208 K K B 401 1555 1555 2.59 LINK O ALA A 208 K K B 401 1555 1555 2.65 LINK K K B 401 O HOH A 650 1555 1555 2.82 LINK K K B 401 O HOH B 400 1555 1555 2.95 LINK K K B 401 O HOH A 552 1555 1555 2.96 CISPEP 1 PHE A 162 PRO A 163 0 -6.07 CISPEP 2 PHE B 162 PRO B 163 0 -5.38 SITE 1 AC1 5 LEU A 69 GLY A 70 GLY A 72 LYS A 160 SITE 2 AC1 5 HOH A 471 SITE 1 AC2 5 LEU B 69 GLY B 70 GLY B 72 ASN B 93 SITE 2 AC2 5 LYS B 160 SITE 1 AC3 7 GLU A 178 ALA A 208 HOH A 286 HOH A 552 SITE 2 AC3 7 HOH A 650 ALA B 208 HOH B 400 CRYST1 49.947 60.453 159.119 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006285 0.00000