HEADER TRANSFERASE 29-JAN-10 3LM9 TITLE CRYSTAL STRUCTURE OF FRUCTOKINASE WITH ADP AND FRUCTOSE BOUND IN THE TITLE 2 ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOKINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUCOMANNAN UTILIZATION PROTEIN E; COMPND 5 EC: 2.7.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: GMUE, YDHR, BSU05860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS FRUCTOKINASE, ADP-BINDING, FRUCTOSE-BINDING, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, ATP-BINDING, CARBOHYDRATE METABOLISM, KINASE, KEYWDS 4 MAGNESIUM, METAL-BINDING, NUCLEOTIDE-BINDING, POLYSACCHARIDE KEYWDS 5 DEGRADATION, TRANSFERASE, REDUCTIVELY METHYLATED EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,A.STEIN,M.CUFF,L.VOLKART,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 8 22-NOV-23 3LM9 1 REMARK REVDAT 7 06-SEP-23 3LM9 1 HETSYN REVDAT 6 29-JUL-20 3LM9 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE REVDAT 5 01-NOV-17 3LM9 1 REMARK REVDAT 4 10-OCT-12 3LM9 1 JRNL REVDAT 3 13-JUL-11 3LM9 1 VERSN REVDAT 2 27-OCT-10 3LM9 1 KEYWDS REVDAT 1 09-MAR-10 3LM9 0 JRNL AUTH B.NOCEK,A.J.STEIN,R.JEDRZEJCZAK,M.E.CUFF,H.LI,L.VOLKART, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL STRUCTURAL STUDIES OF ROK FRUCTOKINASE YDHR FROM BACILLUS JRNL TITL 2 SUBTILIS: INSIGHTS INTO SUBSTRATE BINDING AND FRUCTOSE JRNL TITL 3 SPECIFICITY. JRNL REF J.MOL.BIOL. V. 406 325 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21185308 JRNL DOI 10.1016/J.JMB.2010.12.021 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1024 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1379 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : -0.81000 REMARK 3 B33 (A**2) : 1.21000 REMARK 3 B12 (A**2) : -0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.209 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2349 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1556 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3193 ; 1.876 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3809 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 6.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;38.669 ;24.639 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;14.999 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.254 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2608 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 464 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1449 ; 0.919 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 607 ; 0.204 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2319 ; 1.794 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 900 ; 2.975 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 874 ; 4.782 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3775 -44.0624 -22.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.1244 T22: 0.1399 REMARK 3 T33: 0.1653 T12: -0.0148 REMARK 3 T13: -0.0137 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.7145 L22: 0.1289 REMARK 3 L33: 1.5330 L12: 0.1855 REMARK 3 L13: 1.0753 L23: 0.0087 REMARK 3 S TENSOR REMARK 3 S11: -0.0343 S12: 0.0387 S13: -0.0228 REMARK 3 S21: 0.0023 S22: 0.0438 S23: -0.0717 REMARK 3 S31: 0.0060 S32: 0.0481 S33: -0.0094 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4256 -46.4073 -28.7001 REMARK 3 T TENSOR REMARK 3 T11: 0.1492 T22: 0.1437 REMARK 3 T33: 0.1502 T12: -0.0174 REMARK 3 T13: -0.0017 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4202 L22: 0.4940 REMARK 3 L33: 1.3521 L12: 0.0502 REMARK 3 L13: 0.6477 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: 0.0453 S12: 0.0519 S13: 0.0138 REMARK 3 S21: -0.0713 S22: 0.0627 S23: -0.0496 REMARK 3 S31: 0.0878 S32: -0.0173 S33: -0.1080 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 33.7235 -36.9624 -21.7501 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1549 REMARK 3 T33: 0.1563 T12: -0.0407 REMARK 3 T13: 0.0214 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.9658 L22: 1.2114 REMARK 3 L33: 0.3312 L12: 0.0529 REMARK 3 L13: -0.2409 L23: -0.3583 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0878 S13: 0.1386 REMARK 3 S21: 0.0664 S22: -0.0135 S23: 0.0185 REMARK 3 S31: -0.0673 S32: 0.0443 S33: -0.0651 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 256 REMARK 3 ORIGIN FOR THE GROUP (A): 28.2575 -38.9016 -11.5925 REMARK 3 T TENSOR REMARK 3 T11: 0.1581 T22: 0.1701 REMARK 3 T33: 0.1480 T12: -0.0339 REMARK 3 T13: 0.0408 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 1.5638 L22: 1.4232 REMARK 3 L33: 0.6487 L12: 0.9925 REMARK 3 L13: -0.1031 L23: -0.5502 REMARK 3 S TENSOR REMARK 3 S11: 0.1031 S12: -0.1889 S13: 0.1948 REMARK 3 S21: 0.1748 S22: -0.0449 S23: 0.1356 REMARK 3 S31: -0.1014 S32: 0.0006 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 257 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0930 -51.0735 -13.8831 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.2031 REMARK 3 T33: 0.1100 T12: -0.0517 REMARK 3 T13: -0.0344 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.0648 L22: 1.1760 REMARK 3 L33: 0.3179 L12: -0.2884 REMARK 3 L13: -0.9516 L23: 0.2338 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.1836 S13: -0.1915 REMARK 3 S21: 0.1027 S22: -0.0184 S23: -0.1199 REMARK 3 S31: 0.0419 S32: 0.0293 S33: 0.0426 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20173 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLEMAN2, CCP4 REMARK 200 STARTING MODEL: 3EPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM SULFATE 0.1 M TRIS 10MM REMARK 280 L-FRUCTOSE 20MM ADP, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.65267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.30533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.30533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.65267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -49.30533 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER A 294 REMARK 465 GLY A 295 REMARK 465 GLU A 296 REMARK 465 VAL A 297 REMARK 465 ARG A 298 REMARK 465 SER A 299 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 -147.27 -126.19 REMARK 500 THR A 76 143.63 -170.73 REMARK 500 SER A 259 -91.34 -135.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 ND1 REMARK 620 2 CYS A 168 SG 106.1 REMARK 620 3 HIS A 171 ND1 104.9 105.5 REMARK 620 4 CYS A 174 SG 114.9 106.1 118.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EPQ RELATED DB: PDB REMARK 900 RELATED ID: APC1098 RELATED DB: TARGETDB DBREF 3LM9 A 1 299 UNP O05510 SCRK_BACSU 1 299 SEQADV 3LM9 SER A -2 UNP O05510 EXPRESSION TAG SEQADV 3LM9 ASN A -1 UNP O05510 EXPRESSION TAG SEQADV 3LM9 ALA A 0 UNP O05510 EXPRESSION TAG SEQRES 1 A 302 SER ASN ALA MSE LEU GLY GLY ILE GLU ALA GLY GLY THR SEQRES 2 A 302 LYS PHE VAL CYS ALA VAL GLY ARG GLU ASP GLY THR ILE SEQRES 3 A 302 ILE ASP ARG ILE GLU PHE PRO THR LYS MSE PRO ASP GLU SEQRES 4 A 302 THR ILE GLU LYS VAL ILE GLN TYR PHE SER GLN PHE SER SEQRES 5 A 302 LEU GLN ALA ILE GLY ILE GLY SER PHE GLY PRO VAL ASP SEQRES 6 A 302 ASN ASP LYS THR SER GLN THR TYR GLY THR ILE THR ALA SEQRES 7 A 302 THR PRO LYS ALA GLY TRP ARG HIS TYR PRO PHE LEU GLN SEQRES 8 A 302 THR VAL LYS ASN GLU MSE LYS ILE PRO VAL GLY PHE SER SEQRES 9 A 302 THR ASP VAL ASN ALA ALA ALA LEU GLY GLU PHE LEU PHE SEQRES 10 A 302 GLY GLU ALA LYS GLY LEU ASP SER CYS LEU TYR ILE THR SEQRES 11 A 302 ILE GLY THR GLY ILE GLY ALA GLY ALA ILE VAL GLU GLY SEQRES 12 A 302 ARG LEU LEU GLN GLY LEU SER HIS PRO GLU MSE GLY HIS SEQRES 13 A 302 ILE TYR ILE ARG ARG HIS PRO ASP ASP VAL TYR GLN GLY SEQRES 14 A 302 LYS CYS PRO TYR HIS GLY ASP CYS PHE GLU GLY LEU ALA SEQRES 15 A 302 SER GLY PRO ALA ILE GLU ALA ARG TRP GLY LYS LYS ALA SEQRES 16 A 302 ALA ASP LEU SER ASP ILE ALA GLN VAL TRP GLU LEU GLU SEQRES 17 A 302 GLY TYR TYR ILE ALA GLN ALA LEU ALA GLN TYR ILE LEU SEQRES 18 A 302 ILE LEU ALA PRO MLY MLY ILE ILE LEU GLY GLY GLY VAL SEQRES 19 A 302 MSE GLN GLN LYS GLN VAL PHE SER TYR ILE TYR GLN TYR SEQRES 20 A 302 VAL PRO LYS ILE MSE ASN SER TYR LEU ASP PHE SER GLU SEQRES 21 A 302 LEU SER ASP ASP ILE SER ASP TYR ILE VAL PRO PRO ARG SEQRES 22 A 302 LEU GLY SER ASN ALA GLY ILE ILE GLY THR LEU VAL LEU SEQRES 23 A 302 ALA HIS GLN ALA LEU GLN ALA GLU ALA ALA SER GLY GLU SEQRES 24 A 302 VAL ARG SER MODRES 3LM9 MSE A 1 MET SELENOMETHIONINE MODRES 3LM9 MSE A 33 MET SELENOMETHIONINE MODRES 3LM9 MSE A 94 MET SELENOMETHIONINE MODRES 3LM9 MSE A 151 MET SELENOMETHIONINE MODRES 3LM9 MLY A 223 LYS N-DIMETHYL-LYSINE MODRES 3LM9 MLY A 224 LYS N-DIMETHYL-LYSINE MODRES 3LM9 MSE A 232 MET SELENOMETHIONINE MODRES 3LM9 MSE A 249 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 33 8 HET MSE A 94 8 HET MSE A 151 8 HET MLY A 223 11 HET MLY A 224 11 HET MSE A 232 8 HET MSE A 249 8 HET FRU A1001 12 HET SO4 A2001 5 HET ADP A3001 27 HET ZN A 302 1 HETNAM MSE SELENOMETHIONINE HETNAM MLY N-DIMETHYL-LYSINE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ZN ZINC ION HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 1 MLY 2(C8 H18 N2 O2) FORMUL 2 FRU C6 H12 O6 FORMUL 3 SO4 O4 S 2- FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *82(H2 O) HELIX 1 1 MSE A 33 SER A 46 1 14 HELIX 2 2 PRO A 85 LYS A 95 1 11 HELIX 3 3 ASP A 103 GLY A 115 1 13 HELIX 4 4 GLU A 150 ILE A 154 5 5 HELIX 5 5 CYS A 174 SER A 180 1 7 HELIX 6 6 SER A 180 GLY A 189 1 10 HELIX 7 7 LYS A 191 LEU A 195 5 5 HELIX 8 8 ILE A 198 LEU A 220 1 23 HELIX 9 9 GLY A 230 GLN A 234 5 5 HELIX 10 10 LYS A 235 ASN A 250 1 16 HELIX 11 11 PHE A 255 SER A 259 5 5 HELIX 12 12 ASP A 261 ASP A 264 5 4 HELIX 13 13 LEU A 271 SER A 273 5 3 HELIX 14 14 ASN A 274 ALA A 293 1 20 SHEET 1 A 5 ILE A 23 PRO A 30 0 SHEET 2 A 5 LYS A 11 GLY A 17 -1 N VAL A 16 O ILE A 24 SHEET 3 A 5 LEU A 2 ALA A 7 -1 N LEU A 2 O GLY A 17 SHEET 4 A 5 ALA A 52 SER A 57 1 O ALA A 52 N GLY A 3 SHEET 5 A 5 VAL A 98 THR A 102 1 O GLY A 99 N ILE A 53 SHEET 1 B 5 ARG A 141 LEU A 142 0 SHEET 2 B 5 ILE A 132 VAL A 138 -1 N VAL A 138 O ARG A 141 SHEET 3 B 5 CYS A 123 ILE A 128 -1 N TYR A 125 O GLY A 135 SHEET 4 B 5 ILE A 225 GLY A 228 1 O ILE A 226 N ILE A 126 SHEET 5 B 5 ILE A 266 VAL A 267 1 O VAL A 267 N LEU A 227 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LEU A 2 1555 1555 1.34 LINK C LYS A 32 N MSE A 33 1555 1555 1.33 LINK C MSE A 33 N PRO A 34 1555 1555 1.31 LINK C GLU A 93 N MSE A 94 1555 1555 1.34 LINK C MSE A 94 N LYS A 95 1555 1555 1.33 LINK C GLU A 150 N MSE A 151 1555 1555 1.32 LINK C MSE A 151 N GLY A 152 1555 1555 1.31 LINK C PRO A 222 N MLY A 223 1555 1555 1.33 LINK C MLY A 223 N MLY A 224 1555 1555 1.34 LINK C MLY A 224 N ILE A 225 1555 1555 1.33 LINK C VAL A 231 N MSE A 232 1555 1555 1.32 LINK C MSE A 232 N GLN A 233 1555 1555 1.31 LINK C ILE A 248 N MSE A 249 1555 1555 1.34 LINK C MSE A 249 N ASN A 250 1555 1555 1.33 LINK ND1 HIS A 153 ZN ZN A 302 1555 1555 2.06 LINK SG CYS A 168 ZN ZN A 302 1555 1555 2.36 LINK ND1 HIS A 171 ZN ZN A 302 1555 1555 2.08 LINK SG CYS A 174 ZN ZN A 302 1555 1555 2.30 CISPEP 1 GLY A 59 PRO A 60 0 3.24 CRYST1 112.333 112.333 73.958 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008902 0.005140 0.000000 0.00000 SCALE2 0.000000 0.010279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013521 0.00000