HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JAN-10 3LMB TITLE THE CRYSTAL STRUCTURE OF THE PROTEIN OLEI01261 WITH UNKNOWN FUNCTION TITLE 2 FROM CHLOROBACULUM TEPIDUM TLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA RB-8; SOURCE 3 ORGANISM_TAXID: 698738; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS PROTEIN OLEI01261, UNKNOWN FUNCTION, CHLOROBACULUM TEPIDUM TLS, KEYWDS 2 STRUCTURAL GENOMICS, PSI2, MCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,E.EVDOKIMOVA,O.EGOROVA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 06-NOV-24 3LMB 1 LINK REVDAT 5 07-AUG-13 3LMB 1 JRNL REVDAT 4 24-JUL-13 3LMB 1 JRNL REVDAT 3 29-FEB-12 3LMB 1 JRNL SOURCE REVDAT 2 13-JUL-11 3LMB 1 VERSN REVDAT 1 16-MAR-10 3LMB 0 JRNL AUTH M.KUBE,T.N.CHERNIKOVA,Y.AL-RAMAHI,A.BELOQUI,N.LOPEZ-CORTEZ, JRNL AUTH 2 M.E.GUAZZARONI,H.J.HEIPIEPER,S.KLAGES,O.R.KOTSYURBENKO, JRNL AUTH 3 I.LANGER,T.Y.NECHITAYLO,H.LUNSDORF,M.FERNANDEZ,S.JUAREZ, JRNL AUTH 4 S.CIORDIA,A.SINGER,O.KAGAN,O.EGOROVA,P.ALAIN PETIT, JRNL AUTH 5 P.STOGIOS,Y.KIM,A.TCHIGVINTSEV,R.FLICK,R.DENARO,M.GENOVESE, JRNL AUTH 6 J.P.ALBAR,O.N.REVA,M.MARTINEZ-GOMARIZ,H.TRAN,M.FERRER, JRNL AUTH 7 A.SAVCHENKO,A.F.YAKUNIN,M.M.YAKIMOV,O.V.GOLYSHINA, JRNL AUTH 8 R.REINHARDT,P.N.GOLYSHIN JRNL TITL GENOME SEQUENCE AND FUNCTIONAL GENOMIC ANALYSIS OF THE JRNL TITL 2 OIL-DEGRADING BACTERIUM OLEISPIRA ANTARCTICA. JRNL REF NAT COMMUN V. 4 2156 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23877221 JRNL DOI 10.1038/NCOMMS3156 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19329 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.1800 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.59000 REMARK 3 B22 (A**2) : -0.34000 REMARK 3 B33 (A**2) : 0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2631 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3561 ; 2.004 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.271 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;42.485 ;25.528 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 455 ;18.888 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;17.151 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.181 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2008 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1641 ; 1.199 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2639 ; 2.261 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 990 ; 4.116 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 922 ; 6.061 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 50 REMARK 3 RESIDUE RANGE : A 51 A 100 REMARK 3 RESIDUE RANGE : A 101 A 164 REMARK 3 RESIDUE RANGE : B 2 B 50 REMARK 3 RESIDUE RANGE : B 51 B 100 REMARK 3 RESIDUE RANGE : B 101 B 164 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7140 34.5860 0.1840 REMARK 3 T TENSOR REMARK 3 T11: 0.0708 T22: 0.0395 REMARK 3 T33: 0.0288 T12: -0.0039 REMARK 3 T13: 0.0063 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.4810 L22: 1.8082 REMARK 3 L33: 0.8230 L12: -0.7631 REMARK 3 L13: 0.1535 L23: -0.1993 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0707 S13: 0.0386 REMARK 3 S21: 0.0705 S22: 0.0032 S23: 0.0883 REMARK 3 S31: -0.0814 S32: -0.0443 S33: -0.0094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057453. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 53.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MG FORMATE, 20% PEG3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.87750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.48100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.87750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.04500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.48100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 165 REMARK 465 MSE B 1 REMARK 465 GLN B 165 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 PRO B 147 CB CG CD REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 2 CB ASN A 2 CG 0.189 REMARK 500 VAL A 10 CB VAL A 10 CG1 -0.149 REMARK 500 VAL A 153 CB VAL A 153 CG1 -0.182 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 43 CB - CA - C ANGL. DEV. = -17.2 DEGREES REMARK 500 VAL A 88 CB - CA - C ANGL. DEV. = -14.8 DEGREES REMARK 500 THR A 89 N - CA - CB ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 102 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU A 132 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ASP A 139 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 THR B 43 CB - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 VAL B 88 CB - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 PRO B 147 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 -165.51 -119.84 REMARK 500 LEU B 5 -31.23 -136.75 REMARK 500 ASN B 51 -166.06 -124.19 REMARK 500 GLU B 148 -76.90 -59.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40303 RELATED DB: TARGETDB DBREF 3LMB A 1 165 PDB 3LMB 3LMB 1 165 DBREF 3LMB B 1 165 PDB 3LMB 3LMB 1 165 SEQRES 1 A 165 MSE ASN ALA SER LEU THR PRO ASP GLN VAL SER LYS LYS SEQRES 2 A 165 LEU LYS GLN PHE PHE SER ASP HIS LEU PRO ILE SER GLN SEQRES 3 A 165 PHE MSE GLY LEU GLU ILE GLU SER TYR ASP GLY ASP THR SEQRES 4 A 165 LEU ILE LEU THR ALA PRO LEU GLU PRO ASN ILE ASN ASP SEQRES 5 A 165 LYS GLN THR ALA PHE GLY GLY SER LEU TYR ASN ALA ALA SEQRES 6 A 165 VAL MSE ALA CYS TRP GLY MSE VAL TYR LEU LYS THR GLN SEQRES 7 A 165 GLU GLU ASN ILE ALA CYS ASN GLN VAL VAL THR GLU GLY SEQRES 8 A 165 ASN MSE LYS TYR ILE ALA PRO VAL TYR GLY ARG ILE ARG SEQRES 9 A 165 ALA ILE CYS HIS ALA PRO ASP GLU GLU GLU LEU ALA ASN SEQRES 10 A 165 PHE PHE ASP HIS PHE GLU ARG LYS GLY LYS ALA ARG ILE SEQRES 11 A 165 SER LEU GLU ALA ALA ILE TYR ASN ASP ALA CYS VAL MSE SEQRES 12 A 165 LYS ILE GLU PRO GLU THR LYS PRO SER VAL LYS PHE ASN SEQRES 13 A 165 GLY GLN TYR ALA ILE LEU LYS ASN GLN SEQRES 1 B 165 MSE ASN ALA SER LEU THR PRO ASP GLN VAL SER LYS LYS SEQRES 2 B 165 LEU LYS GLN PHE PHE SER ASP HIS LEU PRO ILE SER GLN SEQRES 3 B 165 PHE MSE GLY LEU GLU ILE GLU SER TYR ASP GLY ASP THR SEQRES 4 B 165 LEU ILE LEU THR ALA PRO LEU GLU PRO ASN ILE ASN ASP SEQRES 5 B 165 LYS GLN THR ALA PHE GLY GLY SER LEU TYR ASN ALA ALA SEQRES 6 B 165 VAL MSE ALA CYS TRP GLY MSE VAL TYR LEU LYS THR GLN SEQRES 7 B 165 GLU GLU ASN ILE ALA CYS ASN GLN VAL VAL THR GLU GLY SEQRES 8 B 165 ASN MSE LYS TYR ILE ALA PRO VAL TYR GLY ARG ILE ARG SEQRES 9 B 165 ALA ILE CYS HIS ALA PRO ASP GLU GLU GLU LEU ALA ASN SEQRES 10 B 165 PHE PHE ASP HIS PHE GLU ARG LYS GLY LYS ALA ARG ILE SEQRES 11 B 165 SER LEU GLU ALA ALA ILE TYR ASN ASP ALA CYS VAL MSE SEQRES 12 B 165 LYS ILE GLU PRO GLU THR LYS PRO SER VAL LYS PHE ASN SEQRES 13 B 165 GLY GLN TYR ALA ILE LEU LYS ASN GLN MODRES 3LMB MSE A 1 MET SELENOMETHIONINE MODRES 3LMB MSE A 28 MET SELENOMETHIONINE MODRES 3LMB MSE A 67 MET SELENOMETHIONINE MODRES 3LMB MSE A 72 MET SELENOMETHIONINE MODRES 3LMB MSE A 93 MET SELENOMETHIONINE MODRES 3LMB MSE A 143 MET SELENOMETHIONINE MODRES 3LMB MSE B 28 MET SELENOMETHIONINE MODRES 3LMB MSE B 67 MET SELENOMETHIONINE MODRES 3LMB MSE B 72 MET SELENOMETHIONINE MODRES 3LMB MSE B 93 MET SELENOMETHIONINE MODRES 3LMB MSE B 143 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 28 8 HET MSE A 67 8 HET MSE A 72 8 HET MSE A 93 8 HET MSE A 143 8 HET MSE B 28 8 HET MSE B 67 16 HET MSE B 72 8 HET MSE B 93 8 HET MSE B 143 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 HOH *134(H2 O) HELIX 1 1 THR A 6 LEU A 22 1 17 HELIX 2 2 LEU A 22 GLY A 29 1 8 HELIX 3 3 LEU A 46 ILE A 50 5 5 HELIX 4 4 PHE A 57 GLU A 80 1 24 HELIX 5 5 ASP A 111 GLY A 126 1 16 HELIX 6 6 THR B 6 LEU B 22 1 17 HELIX 7 7 LEU B 22 MSE B 28 1 7 HELIX 8 8 LEU B 46 ILE B 50 5 5 HELIX 9 9 PHE B 57 GLU B 80 1 24 HELIX 10 10 ASP B 111 GLY B 126 1 16 SHEET 1 A12 GLU A 31 TYR A 35 0 SHEET 2 A12 THR A 39 ALA A 44 -1 O THR A 43 N GLU A 31 SHEET 3 A12 ILE A 103 HIS A 108 -1 O CYS A 107 N LEU A 40 SHEET 4 A12 LYS A 127 TYR A 137 -1 O ALA A 135 N ILE A 106 SHEET 5 A12 VAL A 153 LEU A 162 -1 O GLY A 157 N LEU A 132 SHEET 6 A12 ASN A 85 TYR A 95 -1 N ASN A 85 O LEU A 162 SHEET 7 A12 ASN B 85 TYR B 95 -1 O GLY B 91 N MSE A 93 SHEET 8 A12 VAL B 153 LEU B 162 -1 O ASN B 156 N ASN B 92 SHEET 9 A12 LYS B 127 ILE B 136 -1 N LEU B 132 O GLY B 157 SHEET 10 A12 ILE B 103 HIS B 108 -1 N ILE B 106 O ALA B 135 SHEET 11 A12 THR B 39 ALA B 44 -1 N LEU B 40 O CYS B 107 SHEET 12 A12 GLU B 31 TYR B 35 -1 N GLU B 33 O ILE B 41 SSBOND 1 CYS A 141 CYS B 141 1555 2565 2.35 LINK C MSE A 1 N ASN A 2 1555 1555 1.33 LINK C PHE A 27 N MSE A 28 1555 1555 1.32 LINK C MSE A 28 N GLY A 29 1555 1555 1.34 LINK C VAL A 66 N MSE A 67 1555 1555 1.34 LINK C MSE A 67 N ALA A 68 1555 1555 1.35 LINK C GLY A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N VAL A 73 1555 1555 1.33 LINK C ASN A 92 N MSE A 93 1555 1555 1.35 LINK C MSE A 93 N LYS A 94 1555 1555 1.31 LINK C VAL A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N LYS A 144 1555 1555 1.33 LINK C PHE B 27 N MSE B 28 1555 1555 1.32 LINK C MSE B 28 N GLY B 29 1555 1555 1.35 LINK C VAL B 66 N AMSE B 67 1555 1555 1.34 LINK C VAL B 66 N BMSE B 67 1555 1555 1.33 LINK C AMSE B 67 N ALA B 68 1555 1555 1.33 LINK C BMSE B 67 N ALA B 68 1555 1555 1.33 LINK C GLY B 71 N MSE B 72 1555 1555 1.34 LINK C MSE B 72 N VAL B 73 1555 1555 1.35 LINK C ASN B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N LYS B 94 1555 1555 1.34 LINK C VAL B 142 N MSE B 143 1555 1555 1.34 LINK C MSE B 143 N LYS B 144 1555 1555 1.33 CRYST1 58.090 72.962 79.755 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017215 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012538 0.00000 HETATM 1 N MSE A 1 33.508 10.143 -16.590 1.00 31.88 N HETATM 2 CA MSE A 1 32.801 10.014 -15.299 1.00 32.04 C HETATM 3 C MSE A 1 33.787 10.413 -14.154 1.00 27.79 C HETATM 4 O MSE A 1 34.959 10.217 -14.305 1.00 29.10 O HETATM 5 CB MSE A 1 32.254 8.573 -15.177 1.00 34.40 C HETATM 6 CG MSE A 1 30.732 8.490 -14.667 1.00 43.25 C HETATM 7 SE MSE A 1 30.085 9.587 -13.058 1.00 64.69 SE HETATM 8 CE MSE A 1 28.864 8.226 -12.236 1.00 59.76 C