data_3LNJ # _entry.id 3LNJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LNJ pdb_00003lnj 10.2210/pdb3lnj/pdb RCSB RCSB057497 ? ? WWPDB D_1000057497 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 1 3 2023-09-06 5 'Structure model' 1 4 2023-11-22 6 'Structure model' 1 5 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Refinement description' 3 2 'Structure model' 'Version format compliance' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Refinement description' 9 5 'Structure model' 'Data collection' 10 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 6 'Structure model' pdbx_entry_details # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.pdbx_value_order' 6 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 18 5 'Structure model' '_chem_comp_atom.atom_id' 19 5 'Structure model' '_chem_comp_bond.atom_id_2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3LNJ _pdbx_database_status.recvd_initial_deposition_date 2010-02-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3IWY 'CRYSTAL STRUCTURE OF HUMAN MDM2 COMPLEXED WITH D-PEPTIDE (12 residues)' unspecified PDB 3EQS 'CRYSTAL STRUCTURE OF HUMAN MDM2 COMPLEXED WITH 12-mer peptide inhibitor' unspecified PDB 3IUX 'CRYSTAL STRUCTURE OF HUMAN MDM2 COMPLEXED WITH a potent miniature protein inhibitor (18-residues)' unspecified PDB 1YCR 'Structure of the MDM2 ocoprotein bound to the p53 tumor transactivation domain' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pazgier, M.' 1 'Lu, W.' 2 # _citation.id primary _citation.title 'A left-handed solution to peptide inhibition of the p53-MDM2 interaction.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 49 _citation.page_first 3649 _citation.page_last 3652 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20449836 _citation.pdbx_database_id_DOI 10.1002/anie.201000329 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, M.' 1 ? primary 'Pazgier, M.' 2 ? primary 'Li, C.' 3 ? primary 'Yuan, W.' 4 ? primary 'Li, C.' 5 ? primary 'Lu, W.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'E3 ubiquitin-protein ligase Mdm2' 10044.889 3 6.3.2.- ? 'UNP residues 25-109, P53 BINDING DOMAIN' ? 2 polymer syn 'D-peptide inhibitor' 1521.740 3 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 61 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'p53-binding protein Mdm2, Oncoprotein Mdm2, Double minute 2 protein, Hdm2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY RNLVV ; ;ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY RNLVV ; A,C,E ? 2 'polypeptide(L)' no yes '(DTH)(DSG)(DTR)(DTY)(DAL)(DSG)(DLE)(DGL)(DLY)(DLE)(DLE)(DAR)' TNWYANLEKLLR B,D,F ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'SULFATE ION' SO4 4 'CHLORIDE ION' CL 5 GLYCEROL GOL 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 THR n 1 3 LEU n 1 4 VAL n 1 5 ARG n 1 6 PRO n 1 7 LYS n 1 8 PRO n 1 9 LEU n 1 10 LEU n 1 11 LEU n 1 12 LYS n 1 13 LEU n 1 14 LEU n 1 15 LYS n 1 16 SER n 1 17 VAL n 1 18 GLY n 1 19 ALA n 1 20 GLN n 1 21 LYS n 1 22 ASP n 1 23 THR n 1 24 TYR n 1 25 THR n 1 26 MET n 1 27 LYS n 1 28 GLU n 1 29 VAL n 1 30 LEU n 1 31 PHE n 1 32 TYR n 1 33 LEU n 1 34 GLY n 1 35 GLN n 1 36 TYR n 1 37 ILE n 1 38 MET n 1 39 THR n 1 40 LYS n 1 41 ARG n 1 42 LEU n 1 43 TYR n 1 44 ASP n 1 45 GLU n 1 46 LYS n 1 47 GLN n 1 48 GLN n 1 49 HIS n 1 50 ILE n 1 51 VAL n 1 52 TYR n 1 53 CYS n 1 54 SER n 1 55 ASN n 1 56 ASP n 1 57 LEU n 1 58 LEU n 1 59 GLY n 1 60 ASP n 1 61 LEU n 1 62 PHE n 1 63 GLY n 1 64 VAL n 1 65 PRO n 1 66 SER n 1 67 PHE n 1 68 SER n 1 69 VAL n 1 70 LYS n 1 71 GLU n 1 72 HIS n 1 73 ARG n 1 74 LYS n 1 75 ILE n 1 76 TYR n 1 77 THR n 1 78 MET n 1 79 ILE n 1 80 TYR n 1 81 ARG n 1 82 ASN n 1 83 LEU n 1 84 VAL n 1 85 VAL n 2 1 DTH n 2 2 DSG n 2 3 DTR n 2 4 DTY n 2 5 DAL n 2 6 DSG n 2 7 DLE n 2 8 DGL n 2 9 DLY n 2 10 DLE n 2 11 DLE n 2 12 DAR n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'MDM2 sequence occurs naturally in humans.' 2 1 sample ? ? ? ? ? 'Synthetic peptide, D-enantiomer of phage-selected L-peptide' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DAR 'D-peptide linking' . D-ARGININE ? 'C6 H15 N4 O2 1' 175.209 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DSG 'D-peptide linking' . D-ASPARAGINE ? 'C4 H8 N2 O3' 132.118 DTH 'D-peptide linking' . D-THREONINE ? 'C4 H9 N O3' 119.119 DTR 'D-peptide linking' . D-TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 25 ? ? ? A . n A 1 2 THR 2 26 26 THR THR A . n A 1 3 LEU 3 27 27 LEU LEU A . n A 1 4 VAL 4 28 28 VAL VAL A . n A 1 5 ARG 5 29 29 ARG ARG A . n A 1 6 PRO 6 30 30 PRO PRO A . n A 1 7 LYS 7 31 31 LYS LYS A . n A 1 8 PRO 8 32 32 PRO PRO A . n A 1 9 LEU 9 33 33 LEU LEU A . n A 1 10 LEU 10 34 34 LEU LEU A . n A 1 11 LEU 11 35 35 LEU LEU A . n A 1 12 LYS 12 36 36 LYS LYS A . n A 1 13 LEU 13 37 37 LEU LEU A . n A 1 14 LEU 14 38 38 LEU LEU A . n A 1 15 LYS 15 39 39 LYS LYS A . n A 1 16 SER 16 40 40 SER SER A . n A 1 17 VAL 17 41 41 VAL VAL A . n A 1 18 GLY 18 42 42 GLY GLY A . n A 1 19 ALA 19 43 43 ALA ALA A . n A 1 20 GLN 20 44 44 GLN GLN A . n A 1 21 LYS 21 45 45 LYS LYS A . n A 1 22 ASP 22 46 46 ASP ASP A . n A 1 23 THR 23 47 47 THR THR A . n A 1 24 TYR 24 48 48 TYR TYR A . n A 1 25 THR 25 49 49 THR THR A . n A 1 26 MET 26 50 50 MET MET A . n A 1 27 LYS 27 51 51 LYS LYS A . n A 1 28 GLU 28 52 52 GLU GLU A . n A 1 29 VAL 29 53 53 VAL VAL A . n A 1 30 LEU 30 54 54 LEU LEU A . n A 1 31 PHE 31 55 55 PHE PHE A . n A 1 32 TYR 32 56 56 TYR TYR A . n A 1 33 LEU 33 57 57 LEU LEU A . n A 1 34 GLY 34 58 58 GLY GLY A . n A 1 35 GLN 35 59 59 GLN GLN A . n A 1 36 TYR 36 60 60 TYR TYR A . n A 1 37 ILE 37 61 61 ILE ILE A . n A 1 38 MET 38 62 62 MET MET A . n A 1 39 THR 39 63 63 THR THR A . n A 1 40 LYS 40 64 64 LYS LYS A . n A 1 41 ARG 41 65 65 ARG ARG A . n A 1 42 LEU 42 66 66 LEU LEU A . n A 1 43 TYR 43 67 67 TYR TYR A . n A 1 44 ASP 44 68 68 ASP ASP A . n A 1 45 GLU 45 69 69 GLU GLU A . n A 1 46 LYS 46 70 70 LYS LYS A . n A 1 47 GLN 47 71 71 GLN GLN A . n A 1 48 GLN 48 72 72 GLN GLN A . n A 1 49 HIS 49 73 73 HIS HIS A . n A 1 50 ILE 50 74 74 ILE ILE A . n A 1 51 VAL 51 75 75 VAL VAL A . n A 1 52 TYR 52 76 76 TYR TYR A . n A 1 53 CYS 53 77 77 CYS CYS A . n A 1 54 SER 54 78 78 SER SER A . n A 1 55 ASN 55 79 79 ASN ASN A . n A 1 56 ASP 56 80 80 ASP ASP A . n A 1 57 LEU 57 81 81 LEU LEU A . n A 1 58 LEU 58 82 82 LEU LEU A . n A 1 59 GLY 59 83 83 GLY GLY A . n A 1 60 ASP 60 84 84 ASP ASP A . n A 1 61 LEU 61 85 85 LEU LEU A . n A 1 62 PHE 62 86 86 PHE PHE A . n A 1 63 GLY 63 87 87 GLY GLY A . n A 1 64 VAL 64 88 88 VAL VAL A . n A 1 65 PRO 65 89 89 PRO PRO A . n A 1 66 SER 66 90 90 SER SER A . n A 1 67 PHE 67 91 91 PHE PHE A . n A 1 68 SER 68 92 92 SER SER A . n A 1 69 VAL 69 93 93 VAL VAL A . n A 1 70 LYS 70 94 94 LYS LYS A . n A 1 71 GLU 71 95 95 GLU GLU A . n A 1 72 HIS 72 96 96 HIS HIS A . n A 1 73 ARG 73 97 97 ARG ARG A . n A 1 74 LYS 74 98 98 LYS LYS A . n A 1 75 ILE 75 99 99 ILE ILE A . n A 1 76 TYR 76 100 100 TYR TYR A . n A 1 77 THR 77 101 101 THR THR A . n A 1 78 MET 78 102 102 MET MET A . n A 1 79 ILE 79 103 103 ILE ILE A . n A 1 80 TYR 80 104 104 TYR TYR A . n A 1 81 ARG 81 105 105 ARG ARG A . n A 1 82 ASN 82 106 106 ASN ASN A . n A 1 83 LEU 83 107 107 LEU LEU A . n A 1 84 VAL 84 108 108 VAL VAL A . n A 1 85 VAL 85 109 ? ? ? A . n B 2 1 DTH 1 1 ? ? ? B . n B 2 2 DSG 2 2 2 DSG DSG B . n B 2 3 DTR 3 3 3 DTR DTR B . n B 2 4 DTY 4 4 4 DTY DTY B . n B 2 5 DAL 5 5 5 DAL DAL B . n B 2 6 DSG 6 6 6 DSG DSG B . n B 2 7 DLE 7 7 7 DLE DLE B . n B 2 8 DGL 8 8 8 DGL DGL B . n B 2 9 DLY 9 9 9 DLY DLY B . n B 2 10 DLE 10 10 10 DLE DLE B . n B 2 11 DLE 11 11 11 DLE DLE B . n B 2 12 DAR 12 12 12 DAR DAR B . n C 1 1 GLU 1 25 ? ? ? C . n C 1 2 THR 2 26 26 THR THR C . n C 1 3 LEU 3 27 27 LEU LEU C . n C 1 4 VAL 4 28 28 VAL VAL C . n C 1 5 ARG 5 29 29 ARG ARG C . n C 1 6 PRO 6 30 30 PRO PRO C . n C 1 7 LYS 7 31 31 LYS LYS C . n C 1 8 PRO 8 32 32 PRO PRO C . n C 1 9 LEU 9 33 33 LEU LEU C . n C 1 10 LEU 10 34 34 LEU LEU C . n C 1 11 LEU 11 35 35 LEU LEU C . n C 1 12 LYS 12 36 36 LYS LYS C . n C 1 13 LEU 13 37 37 LEU LEU C . n C 1 14 LEU 14 38 38 LEU LEU C . n C 1 15 LYS 15 39 39 LYS LYS C . n C 1 16 SER 16 40 40 SER SER C . n C 1 17 VAL 17 41 41 VAL VAL C . n C 1 18 GLY 18 42 42 GLY GLY C . n C 1 19 ALA 19 43 43 ALA ALA C . n C 1 20 GLN 20 44 44 GLN GLN C . n C 1 21 LYS 21 45 45 LYS LYS C . n C 1 22 ASP 22 46 46 ASP ASP C . n C 1 23 THR 23 47 47 THR THR C . n C 1 24 TYR 24 48 48 TYR TYR C . n C 1 25 THR 25 49 49 THR THR C . n C 1 26 MET 26 50 50 MET MET C . n C 1 27 LYS 27 51 51 LYS LYS C . n C 1 28 GLU 28 52 52 GLU GLU C . n C 1 29 VAL 29 53 53 VAL VAL C . n C 1 30 LEU 30 54 54 LEU LEU C . n C 1 31 PHE 31 55 55 PHE PHE C . n C 1 32 TYR 32 56 56 TYR TYR C . n C 1 33 LEU 33 57 57 LEU LEU C . n C 1 34 GLY 34 58 58 GLY GLY C . n C 1 35 GLN 35 59 59 GLN GLN C . n C 1 36 TYR 36 60 60 TYR TYR C . n C 1 37 ILE 37 61 61 ILE ILE C . n C 1 38 MET 38 62 62 MET MET C . n C 1 39 THR 39 63 63 THR THR C . n C 1 40 LYS 40 64 64 LYS LYS C . n C 1 41 ARG 41 65 65 ARG ARG C . n C 1 42 LEU 42 66 66 LEU LEU C . n C 1 43 TYR 43 67 67 TYR TYR C . n C 1 44 ASP 44 68 68 ASP ASP C . n C 1 45 GLU 45 69 69 GLU GLU C . n C 1 46 LYS 46 70 70 LYS LYS C . n C 1 47 GLN 47 71 71 GLN GLN C . n C 1 48 GLN 48 72 72 GLN GLN C . n C 1 49 HIS 49 73 73 HIS HIS C . n C 1 50 ILE 50 74 74 ILE ILE C . n C 1 51 VAL 51 75 75 VAL VAL C . n C 1 52 TYR 52 76 76 TYR TYR C . n C 1 53 CYS 53 77 77 CYS CYS C . n C 1 54 SER 54 78 78 SER SER C . n C 1 55 ASN 55 79 79 ASN ASN C . n C 1 56 ASP 56 80 80 ASP ASP C . n C 1 57 LEU 57 81 81 LEU LEU C . n C 1 58 LEU 58 82 82 LEU LEU C . n C 1 59 GLY 59 83 83 GLY GLY C . n C 1 60 ASP 60 84 84 ASP ASP C . n C 1 61 LEU 61 85 85 LEU LEU C . n C 1 62 PHE 62 86 86 PHE PHE C . n C 1 63 GLY 63 87 87 GLY GLY C . n C 1 64 VAL 64 88 88 VAL VAL C . n C 1 65 PRO 65 89 89 PRO PRO C . n C 1 66 SER 66 90 90 SER SER C . n C 1 67 PHE 67 91 91 PHE PHE C . n C 1 68 SER 68 92 92 SER SER C . n C 1 69 VAL 69 93 93 VAL VAL C . n C 1 70 LYS 70 94 94 LYS LYS C . n C 1 71 GLU 71 95 95 GLU GLU C . n C 1 72 HIS 72 96 96 HIS HIS C . n C 1 73 ARG 73 97 97 ARG ARG C . n C 1 74 LYS 74 98 98 LYS LYS C . n C 1 75 ILE 75 99 99 ILE ILE C . n C 1 76 TYR 76 100 100 TYR TYR C . n C 1 77 THR 77 101 101 THR THR C . n C 1 78 MET 78 102 102 MET MET C . n C 1 79 ILE 79 103 103 ILE ILE C . n C 1 80 TYR 80 104 104 TYR TYR C . n C 1 81 ARG 81 105 105 ARG ARG C . n C 1 82 ASN 82 106 106 ASN ASN C . n C 1 83 LEU 83 107 107 LEU LEU C . n C 1 84 VAL 84 108 108 VAL VAL C . n C 1 85 VAL 85 109 ? ? ? C . n D 2 1 DTH 1 1 ? ? ? D . n D 2 2 DSG 2 2 2 DSG DSG D . n D 2 3 DTR 3 3 3 DTR DTR D . n D 2 4 DTY 4 4 4 DTY DTY D . n D 2 5 DAL 5 5 5 DAL DAL D . n D 2 6 DSG 6 6 6 DSG DSG D . n D 2 7 DLE 7 7 7 DLE DLE D . n D 2 8 DGL 8 8 8 DGL DGL D . n D 2 9 DLY 9 9 9 DLY DLY D . n D 2 10 DLE 10 10 10 DLE DLE D . n D 2 11 DLE 11 11 11 DLE DLE D . n D 2 12 DAR 12 12 12 DAR DAR D . n E 1 1 GLU 1 25 ? ? ? E . n E 1 2 THR 2 26 26 THR THR E . n E 1 3 LEU 3 27 27 LEU LEU E . n E 1 4 VAL 4 28 28 VAL VAL E . n E 1 5 ARG 5 29 29 ARG ARG E . n E 1 6 PRO 6 30 30 PRO PRO E . n E 1 7 LYS 7 31 31 LYS LYS E . n E 1 8 PRO 8 32 32 PRO PRO E . n E 1 9 LEU 9 33 33 LEU LEU E . n E 1 10 LEU 10 34 34 LEU LEU E . n E 1 11 LEU 11 35 35 LEU LEU E . n E 1 12 LYS 12 36 36 LYS LYS E . n E 1 13 LEU 13 37 37 LEU LEU E . n E 1 14 LEU 14 38 38 LEU LEU E . n E 1 15 LYS 15 39 39 LYS LYS E . n E 1 16 SER 16 40 40 SER SER E . n E 1 17 VAL 17 41 41 VAL VAL E . n E 1 18 GLY 18 42 42 GLY GLY E . n E 1 19 ALA 19 43 43 ALA ALA E . n E 1 20 GLN 20 44 44 GLN GLN E . n E 1 21 LYS 21 45 45 LYS LYS E . n E 1 22 ASP 22 46 46 ASP ASP E . n E 1 23 THR 23 47 47 THR THR E . n E 1 24 TYR 24 48 48 TYR TYR E . n E 1 25 THR 25 49 49 THR THR E . n E 1 26 MET 26 50 50 MET MET E . n E 1 27 LYS 27 51 51 LYS LYS E . n E 1 28 GLU 28 52 52 GLU GLU E . n E 1 29 VAL 29 53 53 VAL VAL E . n E 1 30 LEU 30 54 54 LEU LEU E . n E 1 31 PHE 31 55 55 PHE PHE E . n E 1 32 TYR 32 56 56 TYR TYR E . n E 1 33 LEU 33 57 57 LEU LEU E . n E 1 34 GLY 34 58 58 GLY GLY E . n E 1 35 GLN 35 59 59 GLN GLN E . n E 1 36 TYR 36 60 60 TYR TYR E . n E 1 37 ILE 37 61 61 ILE ILE E . n E 1 38 MET 38 62 62 MET MET E . n E 1 39 THR 39 63 63 THR THR E . n E 1 40 LYS 40 64 64 LYS LYS E . n E 1 41 ARG 41 65 65 ARG ARG E . n E 1 42 LEU 42 66 66 LEU LEU E . n E 1 43 TYR 43 67 67 TYR TYR E . n E 1 44 ASP 44 68 68 ASP ASP E . n E 1 45 GLU 45 69 69 GLU GLU E . n E 1 46 LYS 46 70 70 LYS LYS E . n E 1 47 GLN 47 71 71 GLN GLN E . n E 1 48 GLN 48 72 72 GLN GLN E . n E 1 49 HIS 49 73 73 HIS HIS E . n E 1 50 ILE 50 74 74 ILE ILE E . n E 1 51 VAL 51 75 75 VAL VAL E . n E 1 52 TYR 52 76 76 TYR TYR E . n E 1 53 CYS 53 77 77 CYS CYS E . n E 1 54 SER 54 78 78 SER SER E . n E 1 55 ASN 55 79 79 ASN ASN E . n E 1 56 ASP 56 80 80 ASP ASP E . n E 1 57 LEU 57 81 81 LEU LEU E . n E 1 58 LEU 58 82 82 LEU LEU E . n E 1 59 GLY 59 83 83 GLY GLY E . n E 1 60 ASP 60 84 84 ASP ASP E . n E 1 61 LEU 61 85 85 LEU LEU E . n E 1 62 PHE 62 86 86 PHE PHE E . n E 1 63 GLY 63 87 87 GLY GLY E . n E 1 64 VAL 64 88 88 VAL VAL E . n E 1 65 PRO 65 89 89 PRO PRO E . n E 1 66 SER 66 90 90 SER SER E . n E 1 67 PHE 67 91 91 PHE PHE E . n E 1 68 SER 68 92 92 SER SER E . n E 1 69 VAL 69 93 93 VAL VAL E . n E 1 70 LYS 70 94 94 LYS LYS E . n E 1 71 GLU 71 95 95 GLU GLU E . n E 1 72 HIS 72 96 96 HIS HIS E . n E 1 73 ARG 73 97 97 ARG ARG E . n E 1 74 LYS 74 98 98 LYS LYS E . n E 1 75 ILE 75 99 99 ILE ILE E . n E 1 76 TYR 76 100 100 TYR TYR E . n E 1 77 THR 77 101 101 THR THR E . n E 1 78 MET 78 102 102 MET MET E . n E 1 79 ILE 79 103 103 ILE ILE E . n E 1 80 TYR 80 104 104 TYR TYR E . n E 1 81 ARG 81 105 105 ARG ARG E . n E 1 82 ASN 82 106 106 ASN ASN E . n E 1 83 LEU 83 107 107 LEU LEU E . n E 1 84 VAL 84 108 108 VAL VAL E . n E 1 85 VAL 85 109 ? ? ? E . n F 2 1 DTH 1 1 ? ? ? F . n F 2 2 DSG 2 2 ? ? ? F . n F 2 3 DTR 3 3 3 DTR DTR F . n F 2 4 DTY 4 4 4 DTY DTY F . n F 2 5 DAL 5 5 ? ? ? F . n F 2 6 DSG 6 6 6 DSG DSG F . n F 2 7 DLE 7 7 7 DLE DLE F . n F 2 8 DGL 8 8 8 DGL DGL F . n F 2 9 DLY 9 9 9 DLY DLY F . n F 2 10 DLE 10 10 10 DLE DLE F . n F 2 11 DLE 11 11 11 DLE DLE F . n F 2 12 DAR 12 12 12 DAR DAR F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 SO4 1 201 1 SO4 SO4 A . H 4 CL 1 201 1 CL CL C . I 5 GOL 1 201 3968 GOL GOL E . J 6 HOH 1 301 5 HOH HOH A . J 6 HOH 2 302 6 HOH HOH A . J 6 HOH 3 303 8 HOH HOH A . J 6 HOH 4 304 10 HOH HOH A . J 6 HOH 5 305 11 HOH HOH A . J 6 HOH 6 306 12 HOH HOH A . J 6 HOH 7 307 13 HOH HOH A . J 6 HOH 8 308 16 HOH HOH A . J 6 HOH 9 309 19 HOH HOH A . J 6 HOH 10 310 21 HOH HOH A . J 6 HOH 11 311 23 HOH HOH A . J 6 HOH 12 312 110 HOH HOH A . J 6 HOH 13 313 111 HOH HOH A . J 6 HOH 14 314 112 HOH HOH A . J 6 HOH 15 315 113 HOH HOH A . J 6 HOH 16 316 115 HOH HOH A . J 6 HOH 17 317 116 HOH HOH A . J 6 HOH 18 318 117 HOH HOH A . J 6 HOH 19 319 119 HOH HOH A . J 6 HOH 20 320 120 HOH HOH A . J 6 HOH 21 321 121 HOH HOH A . J 6 HOH 22 322 122 HOH HOH A . J 6 HOH 23 323 123 HOH HOH A . J 6 HOH 24 324 124 HOH HOH A . J 6 HOH 25 325 125 HOH HOH A . J 6 HOH 26 326 127 HOH HOH A . K 6 HOH 1 101 34 HOH HOH B . K 6 HOH 2 102 51 HOH HOH B . L 6 HOH 1 301 3 HOH HOH C . L 6 HOH 2 302 13 HOH HOH C . L 6 HOH 3 303 15 HOH HOH C . L 6 HOH 4 304 17 HOH HOH C . L 6 HOH 5 305 20 HOH HOH C . L 6 HOH 6 306 22 HOH HOH C . L 6 HOH 7 307 110 HOH HOH C . L 6 HOH 8 308 111 HOH HOH C . L 6 HOH 9 309 112 HOH HOH C . L 6 HOH 10 310 113 HOH HOH C . L 6 HOH 11 311 114 HOH HOH C . L 6 HOH 12 312 117 HOH HOH C . L 6 HOH 13 313 118 HOH HOH C . L 6 HOH 14 314 120 HOH HOH C . M 6 HOH 1 101 24 HOH HOH D . M 6 HOH 2 102 73 HOH HOH D . N 6 HOH 1 301 4 HOH HOH E . N 6 HOH 2 302 7 HOH HOH E . N 6 HOH 3 303 9 HOH HOH E . N 6 HOH 4 304 18 HOH HOH E . N 6 HOH 5 305 110 HOH HOH E . N 6 HOH 6 306 111 HOH HOH E . N 6 HOH 7 307 112 HOH HOH E . N 6 HOH 8 308 113 HOH HOH E . N 6 HOH 9 309 114 HOH HOH E . N 6 HOH 10 310 115 HOH HOH E . N 6 HOH 11 311 116 HOH HOH E . N 6 HOH 12 312 117 HOH HOH E . N 6 HOH 13 313 118 HOH HOH E . N 6 HOH 14 314 119 HOH HOH E . N 6 HOH 15 315 62 HOH HOH E . N 6 HOH 16 316 121 HOH HOH E . O 6 HOH 1 101 25 HOH HOH F . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0070 ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 # _cell.entry_id 3LNJ _cell.length_a 68.976 _cell.length_b 213.478 _cell.length_c 45.536 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LNJ _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3LNJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 273 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.2 M ammonium sulfate, 0.1 M sodium cacodylate trihydrate, and 30% PEG 8000, pH 6.5., VAPOR DIFFUSION, HANGING DROP, temperature 273K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2009-08-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3LNJ _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 106.74 _reflns.d_resolution_high 2.4 _reflns.number_obs 13268 _reflns.number_all 13680 _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value 0.047 _reflns.pdbx_netI_over_sigmaI 29.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.44 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.775 _reflns_shell.pdbx_Rsym_value 0.710 _reflns_shell.meanI_over_sigI_obs 2 _reflns_shell.pdbx_redundancy 6.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3LNJ _refine.ls_number_reflns_obs 12608 _refine.ls_number_reflns_all 13269 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 106.74 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 96.99 _refine.ls_R_factor_obs 0.21085 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20863 _refine.ls_R_factor_R_free 0.25494 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 660 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.942 _refine.correlation_coeff_Fo_to_Fc_free 0.927 _refine.B_iso_mean 36.844 _refine.aniso_B[1][1] 0.45 _refine.aniso_B[2][2] 0.71 _refine.aniso_B[3][3] -1.16 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3EQS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.472 _refine.pdbx_overall_ESU_R_Free 0.276 _refine.overall_SU_ML 0.180 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 14.158 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2357 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 2430 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 106.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 2413 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.989 2.079 ? 3164 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.193 5.000 ? 246 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 45.355 23.103 ? 87 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.890 15.000 ? 420 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.311 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.125 0.200 ? 364 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1616 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.853 1.500 ? 1393 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.500 2.000 ? 2178 'X-RAY DIFFRACTION' ? r_scbond_it 2.887 3.000 ? 1020 'X-RAY DIFFRACTION' ? r_scangle_it 4.357 4.500 ? 986 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.398 _refine_ls_shell.d_res_low 2.460 _refine_ls_shell.number_reflns_R_work 889 _refine_ls_shell.R_factor_R_work 0.285 _refine_ls_shell.percent_reflns_obs 95.86 _refine_ls_shell.R_factor_R_free 0.366 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3LNJ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3LNJ _struct.title 'Crystal structure of human MDM2 in complex with D-peptide inhibitor (DPMI-alpha)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LNJ _struct_keywords.pdbx_keywords 'LIGASE/LIGASE INHIBITOR' _struct_keywords.text ;MDM2, p53 binding domain, D-peptide activator of MDM2, MDM2-D-peptide complex, Host-virus interaction, Ligase, Metal-binding, Nucleus, Phosphoprotein, Proto-oncogene, Ubl conjugation pathway, Zinc-finger, LIGASE-LIGASE INHIBITOR complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 1 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 6 ? K N N 6 ? L N N 6 ? M N N 6 ? N N N 6 ? O N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MDM2_HUMAN Q00987 1 ;ETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIY RNLVV ; 25 ? 2 PDB 3LNJ 3LNJ 2 XXXXXXXXXXXX 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LNJ A 1 ? 85 ? Q00987 25 ? 109 ? 25 109 2 2 3LNJ B 1 ? 12 ? 3LNJ 1 ? 12 ? 1 12 3 1 3LNJ C 1 ? 85 ? Q00987 25 ? 109 ? 25 109 4 2 3LNJ D 1 ? 12 ? 3LNJ 1 ? 12 ? 1 12 5 1 3LNJ E 1 ? 85 ? Q00987 25 ? 109 ? 25 109 6 2 3LNJ F 1 ? 12 ? 3LNJ 1 ? 12 ? 1 12 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA tetrameric 4 2 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4210 ? 1 MORE -38 ? 1 'SSA (A^2)' 9760 ? 2 'ABSA (A^2)' 4450 ? 2 MORE -33 ? 2 'SSA (A^2)' 9700 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,G,H,J,K,L,M 2 1,2 E,F,I,N,O # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 7 ? SER A 16 ? LYS A 31 SER A 40 1 ? 10 HELX_P HELX_P2 2 THR A 25 ? ARG A 41 ? THR A 49 ARG A 65 1 ? 17 HELX_P HELX_P3 3 ASP A 56 ? GLY A 63 ? ASP A 80 GLY A 87 1 ? 8 HELX_P HELX_P4 4 GLU A 71 ? ASN A 82 ? GLU A 95 ASN A 106 1 ? 12 HELX_P HELX_P5 13 DTY B 4 ? DAR B 12 ? DTY B 4 DAR B 12 1 ? 9 HELX_P HELX_P6 5 LYS C 7 ? SER C 16 ? LYS C 31 SER C 40 1 ? 10 HELX_P HELX_P7 6 THR C 25 ? ARG C 41 ? THR C 49 ARG C 65 1 ? 17 HELX_P HELX_P8 7 ASP C 56 ? GLY C 63 ? ASP C 80 GLY C 87 1 ? 8 HELX_P HELX_P9 8 GLU C 71 ? ARG C 81 ? GLU C 95 ARG C 105 1 ? 11 HELX_P HELX_P10 14 DTY D 4 ? DAR D 12 ? DTY D 4 DAR D 12 1 ? 9 HELX_P HELX_P11 9 LYS E 7 ? SER E 16 ? LYS E 31 SER E 40 1 ? 10 HELX_P HELX_P12 10 THR E 25 ? LYS E 40 ? THR E 49 LYS E 64 1 ? 16 HELX_P HELX_P13 11 ASP E 56 ? GLY E 63 ? ASP E 80 GLY E 87 1 ? 8 HELX_P HELX_P14 12 GLU E 71 ? ASN E 82 ? GLU E 95 ASN E 106 1 ? 12 HELX_P HELX_P15 15 DSG F 6 ? DAR F 12 ? DSG F 6 DAR F 12 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DSG 2 C ? ? ? 1_555 B DTR 3 N ? ? B DSG 2 B DTR 3 1_555 ? ? ? ? ? ? ? 1.429 sing ? covale2 covale both ? B DTR 3 C ? ? ? 1_555 B DTY 4 N ? ? B DTR 3 B DTY 4 1_555 ? ? ? ? ? ? ? 1.299 sing ? covale3 covale both ? B DTY 4 C ? ? ? 1_555 B DAL 5 N ? ? B DTY 4 B DAL 5 1_555 ? ? ? ? ? ? ? 1.262 sing ? covale4 covale both ? B DAL 5 C ? ? ? 1_555 B DSG 6 N ? ? B DAL 5 B DSG 6 1_555 ? ? ? ? ? ? ? 1.270 sing ? covale5 covale both ? B DSG 6 C ? ? ? 1_555 B DLE 7 N ? ? B DSG 6 B DLE 7 1_555 ? ? ? ? ? ? ? 1.284 sing ? covale6 covale both ? B DLE 7 C ? ? ? 1_555 B DGL 8 N ? ? B DLE 7 B DGL 8 1_555 ? ? ? ? ? ? ? 1.273 sing ? covale7 covale both ? B DGL 8 C ? ? ? 1_555 B DLY 9 N ? ? B DGL 8 B DLY 9 1_555 ? ? ? ? ? ? ? 1.263 sing ? covale8 covale both ? B DLY 9 C ? ? ? 1_555 B DLE 10 N ? ? B DLY 9 B DLE 10 1_555 ? ? ? ? ? ? ? 1.291 sing ? covale9 covale both ? B DLE 10 C ? ? ? 1_555 B DLE 11 N ? ? B DLE 10 B DLE 11 1_555 ? ? ? ? ? ? ? 1.265 sing ? covale10 covale both ? B DLE 11 C ? ? ? 1_555 B DAR 12 N ? ? B DLE 11 B DAR 12 1_555 ? ? ? ? ? ? ? 1.297 sing ? covale11 covale both ? D DSG 2 C ? ? ? 1_555 D DTR 3 N ? ? D DSG 2 D DTR 3 1_555 ? ? ? ? ? ? ? 1.422 sing ? covale12 covale both ? D DTR 3 C ? ? ? 1_555 D DTY 4 N ? ? D DTR 3 D DTY 4 1_555 ? ? ? ? ? ? ? 1.280 sing ? covale13 covale both ? D DTY 4 C ? ? ? 1_555 D DAL 5 N ? ? D DTY 4 D DAL 5 1_555 ? ? ? ? ? ? ? 1.286 sing ? covale14 covale both ? D DAL 5 C ? ? ? 1_555 D DSG 6 N ? ? D DAL 5 D DSG 6 1_555 ? ? ? ? ? ? ? 1.267 sing ? covale15 covale both ? D DSG 6 C ? ? ? 1_555 D DLE 7 N ? ? D DSG 6 D DLE 7 1_555 ? ? ? ? ? ? ? 1.268 sing ? covale16 covale both ? D DLE 7 C ? ? ? 1_555 D DGL 8 N ? ? D DLE 7 D DGL 8 1_555 ? ? ? ? ? ? ? 1.286 sing ? covale17 covale both ? D DGL 8 C ? ? ? 1_555 D DLY 9 N ? ? D DGL 8 D DLY 9 1_555 ? ? ? ? ? ? ? 1.255 sing ? covale18 covale both ? D DLY 9 C ? ? ? 1_555 D DLE 10 N ? ? D DLY 9 D DLE 10 1_555 ? ? ? ? ? ? ? 1.295 sing ? covale19 covale both ? D DLE 10 C ? ? ? 1_555 D DLE 11 N ? ? D DLE 10 D DLE 11 1_555 ? ? ? ? ? ? ? 1.279 sing ? covale20 covale both ? D DLE 11 C ? ? ? 1_555 D DAR 12 N ? ? D DLE 11 D DAR 12 1_555 ? ? ? ? ? ? ? 1.266 sing ? covale21 covale both ? F DTR 3 C ? ? ? 1_555 F DTY 4 N ? ? F DTR 3 F DTY 4 1_555 ? ? ? ? ? ? ? 1.287 ? ? covale22 covale both ? F DSG 6 C ? ? ? 1_555 F DLE 7 N ? ? F DSG 6 F DLE 7 1_555 ? ? ? ? ? ? ? 1.279 ? ? covale23 covale both ? F DLE 7 C ? ? ? 1_555 F DGL 8 N ? ? F DLE 7 F DGL 8 1_555 ? ? ? ? ? ? ? 1.280 ? ? covale24 covale both ? F DGL 8 C ? ? ? 1_555 F DLY 9 N ? ? F DGL 8 F DLY 9 1_555 ? ? ? ? ? ? ? 1.270 ? ? covale25 covale both ? F DLY 9 C ? ? ? 1_555 F DLE 10 N ? ? F DLY 9 F DLE 10 1_555 ? ? ? ? ? ? ? 1.272 ? ? covale26 covale both ? F DLE 10 C ? ? ? 1_555 F DLE 11 N ? ? F DLE 10 F DLE 11 1_555 ? ? ? ? ? ? ? 1.256 ? ? covale27 covale both ? F DLE 11 C ? ? ? 1_555 F DAR 12 N ? ? F DLE 11 F DAR 12 1_555 ? ? ? ? ? ? ? 1.283 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 50 ? TYR A 52 ? ILE A 74 TYR A 76 A 2 SER A 66 ? SER A 68 ? SER A 90 SER A 92 B 1 ARG C 5 ? PRO C 6 ? ARG C 29 PRO C 30 B 2 LEU C 83 ? VAL C 84 ? LEU C 107 VAL C 108 C 1 ILE C 50 ? TYR C 52 ? ILE C 74 TYR C 76 C 2 SER C 66 ? SER C 68 ? SER C 90 SER C 92 D 1 ILE E 50 ? TYR E 52 ? ILE E 74 TYR E 76 D 2 SER E 66 ? SER E 68 ? SER E 90 SER E 92 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 51 ? N VAL A 75 O PHE A 67 ? O PHE A 91 B 1 2 N ARG C 5 ? N ARG C 29 O VAL C 84 ? O VAL C 108 C 1 2 N VAL C 51 ? N VAL C 75 O PHE C 67 ? O PHE C 91 D 1 2 N VAL E 51 ? N VAL E 75 O PHE E 67 ? O PHE E 91 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL C 1' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL E 3968' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 HIS A 49 ? HIS A 73 . ? 1_555 ? 2 AC1 3 GLY A 63 ? GLY A 87 . ? 6_545 ? 3 AC1 3 ARG A 81 ? ARG A 105 . ? 6_545 ? 4 AC2 2 LYS A 40 ? LYS A 64 . ? 6_545 ? 5 AC2 2 LYS C 27 ? LYS C 51 . ? 1_555 ? 6 AC3 3 THR E 2 ? THR E 26 . ? 4_555 ? 7 AC3 3 ARG E 73 ? ARG E 97 . ? 1_555 ? 8 AC3 3 THR E 77 ? THR E 101 . ? 1_555 ? # _pdbx_entry_details.entry_id 3LNJ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 105 ? ? CZ A ARG 105 ? ? NH1 A ARG 105 ? ? 123.93 120.30 3.63 0.50 N 2 1 NE A ARG 105 ? ? CZ A ARG 105 ? ? NH2 A ARG 105 ? ? 116.38 120.30 -3.92 0.50 N 3 1 CA B DSG 2 ? ? C B DSG 2 ? ? N B DTR 3 ? ? 95.95 117.20 -21.25 2.20 Y 4 1 O B DSG 2 ? ? C B DSG 2 ? ? N B DTR 3 ? ? 109.71 122.70 -12.99 1.60 Y 5 1 O B DTY 4 ? ? C B DTY 4 ? ? N B DAL 5 ? ? 111.81 122.70 -10.89 1.60 Y 6 1 CA B DAL 5 ? ? C B DAL 5 ? ? N B DSG 6 ? ? 136.08 117.20 18.88 2.20 Y 7 1 O B DAL 5 ? ? C B DAL 5 ? ? N B DSG 6 ? ? 112.58 122.70 -10.12 1.60 Y 8 1 O B DLY 9 ? ? C B DLY 9 ? ? N B DLE 10 ? ? 112.73 122.70 -9.97 1.60 Y 9 1 CA D DSG 2 ? ? C D DSG 2 ? ? N D DTR 3 ? ? 98.13 117.20 -19.07 2.20 Y 10 1 C D DSG 2 ? ? N D DTR 3 ? ? CA D DTR 3 ? ? 141.91 121.70 20.21 2.50 Y 11 1 O D DTY 4 ? ? C D DTY 4 ? ? N D DAL 5 ? ? 134.83 122.70 12.13 1.60 Y 12 1 O D DAL 5 ? ? C D DAL 5 ? ? N D DSG 6 ? ? 111.51 122.70 -11.19 1.60 Y 13 1 O D DGL 8 ? ? C D DGL 8 ? ? N D DLY 9 ? ? 112.70 122.70 -10.00 1.60 Y 14 1 O D DLY 9 ? ? C D DLY 9 ? ? N D DLE 10 ? ? 138.63 122.70 15.93 1.60 Y 15 1 CA D DLE 11 ? ? C D DLE 11 ? ? N D DAR 12 ? ? 131.89 117.20 14.69 2.20 Y 16 1 O D DLE 11 ? ? C D DLE 11 ? ? N D DAR 12 ? ? 113.02 122.70 -9.68 1.60 Y 17 1 CA F DSG 6 ? ? C F DSG 6 ? ? N F DLE 7 ? ? 137.15 117.20 19.95 2.20 Y 18 1 O F DSG 6 ? ? C F DSG 6 ? ? N F DLE 7 ? ? 102.68 122.70 -20.02 1.60 Y 19 1 O F DLE 7 ? ? C F DLE 7 ? ? N F DGL 8 ? ? 101.92 122.70 -20.78 1.60 Y 20 1 C F DLE 7 ? ? N F DGL 8 ? ? CA F DGL 8 ? ? 139.23 121.70 17.53 2.50 Y 21 1 C F DLE 11 ? ? N F DAR 12 ? ? CA F DAR 12 ? ? 138.26 121.70 16.56 2.50 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id DLE _pdbx_validate_torsion.auth_asym_id F _pdbx_validate_torsion.auth_seq_id 7 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 23.09 _pdbx_validate_torsion.psi 44.32 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 DSG _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 2 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 DTR _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 3 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -131.72 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 DSG B 2 ? ? 29.52 2 1 DTR B 3 ? ? -13.90 3 1 DTY B 4 ? ? -26.25 4 1 DGL B 8 ? ? 14.50 5 1 DLY B 9 ? ? 26.52 6 1 DSG D 2 ? ? 22.60 7 1 DAL D 5 ? ? 19.66 8 1 DLE D 7 ? ? 19.87 9 1 DGL D 8 ? ? 25.37 10 1 DTR F 3 ? ? -11.92 11 1 DSG F 6 ? ? -24.18 12 1 DLE F 7 ? ? 33.96 13 1 DGL F 8 ? ? 17.28 # _pdbx_molecule_features.prd_id PRD_000808 _pdbx_molecule_features.name 'D-peptide inhibitor' _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000808 D 2 PRD_000808 B 3 PRD_000808 F # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 12.0516 -47.2746 -6.1212 0.0531 0.0719 0.0617 0.0407 -0.0472 -0.0369 3.0117 3.0032 3.8420 0.2089 -0.1000 -0.7569 -0.1203 0.0303 0.0900 -0.0456 0.0716 0.1101 -0.2309 0.0941 0.0239 'X-RAY DIFFRACTION' 2 ? refined 25.3710 -28.9169 2.9253 0.1033 0.1992 0.1492 -0.0605 -0.0677 -0.0814 2.3924 4.4880 3.1489 -0.1708 -0.2656 0.5668 0.0119 0.1517 -0.1636 -0.3995 0.3186 -0.3897 0.0355 -0.2846 0.6592 'X-RAY DIFFRACTION' 3 ? refined 15.1026 -8.3987 -8.7403 0.1555 0.1189 0.0936 0.0140 -0.0222 -0.0804 4.5077 4.8169 3.6451 0.5048 -0.0067 -0.5542 0.0019 -0.0660 0.0641 0.2525 -0.0947 -0.0839 -0.7131 0.1677 -0.3475 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 26 A 108 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 E 118 E 313 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 C 26 C 108 ? . . . . ? 'X-RAY DIFFRACTION' 4 3 C 120 C 314 ? . . . . ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 25 ? A GLU 1 2 1 Y 1 A VAL 109 ? A VAL 85 3 1 Y 1 B DTH 1 ? B DTH 1 4 1 Y 1 C GLU 25 ? C GLU 1 5 1 Y 1 C VAL 109 ? C VAL 85 6 1 Y 1 D DTH 1 ? D DTH 1 7 1 Y 1 E GLU 25 ? E GLU 1 8 1 Y 1 E VAL 109 ? E VAL 85 9 1 Y 1 F DTH 1 ? F DTH 1 10 1 Y 1 F DSG 2 ? F DSG 2 11 1 Y 1 F DAL 5 ? F DAL 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DAL N N N N 89 DAL CA C N R 90 DAL CB C N N 91 DAL C C N N 92 DAL O O N N 93 DAL OXT O N N 94 DAL H H N N 95 DAL H2 H N N 96 DAL HA H N N 97 DAL HB1 H N N 98 DAL HB2 H N N 99 DAL HB3 H N N 100 DAL HXT H N N 101 DAR N N N N 102 DAR CA C N R 103 DAR CB C N N 104 DAR CG C N N 105 DAR CD C N N 106 DAR NE N N N 107 DAR CZ C N N 108 DAR NH1 N N N 109 DAR NH2 N N N 110 DAR C C N N 111 DAR O O N N 112 DAR OXT O N N 113 DAR H H N N 114 DAR H2 H N N 115 DAR HA H N N 116 DAR HB2 H N N 117 DAR HB3 H N N 118 DAR HG2 H N N 119 DAR HG3 H N N 120 DAR HD2 H N N 121 DAR HD3 H N N 122 DAR HE H N N 123 DAR HH11 H N N 124 DAR HH12 H N N 125 DAR HH21 H N N 126 DAR HH22 H N N 127 DAR HXT H N N 128 DGL N N N N 129 DGL CA C N R 130 DGL C C N N 131 DGL O O N N 132 DGL CB C N N 133 DGL CG C N N 134 DGL CD C N N 135 DGL OE1 O N N 136 DGL OE2 O N N 137 DGL OXT O N N 138 DGL H H N N 139 DGL H2 H N N 140 DGL HA H N N 141 DGL HB2 H N N 142 DGL HB3 H N N 143 DGL HG2 H N N 144 DGL HG3 H N N 145 DGL HE2 H N N 146 DGL HXT H N N 147 DLE N N N N 148 DLE CA C N R 149 DLE CB C N N 150 DLE CG C N N 151 DLE CD1 C N N 152 DLE CD2 C N N 153 DLE C C N N 154 DLE O O N N 155 DLE OXT O N N 156 DLE H H N N 157 DLE H2 H N N 158 DLE HA H N N 159 DLE HB2 H N N 160 DLE HB3 H N N 161 DLE HG H N N 162 DLE HD11 H N N 163 DLE HD12 H N N 164 DLE HD13 H N N 165 DLE HD21 H N N 166 DLE HD22 H N N 167 DLE HD23 H N N 168 DLE HXT H N N 169 DLY N N N N 170 DLY CA C N R 171 DLY C C N N 172 DLY O O N N 173 DLY CB C N N 174 DLY CG C N N 175 DLY CD C N N 176 DLY CE C N N 177 DLY NZ N N N 178 DLY OXT O N N 179 DLY H H N N 180 DLY H2 H N N 181 DLY HA H N N 182 DLY HB2 H N N 183 DLY HB3 H N N 184 DLY HG2 H N N 185 DLY HG3 H N N 186 DLY HD2 H N N 187 DLY HD3 H N N 188 DLY HE2 H N N 189 DLY HE3 H N N 190 DLY HZ1 H N N 191 DLY HZ2 H N N 192 DLY HXT H N N 193 DSG N N N N 194 DSG CA C N R 195 DSG C C N N 196 DSG O O N N 197 DSG CB C N N 198 DSG CG C N N 199 DSG OD1 O N N 200 DSG ND2 N N N 201 DSG OXT O N N 202 DSG H H N N 203 DSG H2 H N N 204 DSG HA H N N 205 DSG HB2 H N N 206 DSG HB3 H N N 207 DSG HD21 H N N 208 DSG HD22 H N N 209 DSG HXT H N N 210 DTH N N N N 211 DTH CA C N R 212 DTH CB C N S 213 DTH CG2 C N N 214 DTH OG1 O N N 215 DTH C C N N 216 DTH O O N N 217 DTH OXT O N N 218 DTH H H N N 219 DTH H2 H N N 220 DTH HA H N N 221 DTH HB H N N 222 DTH HG21 H N N 223 DTH HG22 H N N 224 DTH HG23 H N N 225 DTH HG1 H N N 226 DTH HXT H N N 227 DTR N N N N 228 DTR CA C N R 229 DTR CB C N N 230 DTR CG C Y N 231 DTR CD1 C Y N 232 DTR NE1 N Y N 233 DTR CE2 C Y N 234 DTR CZ2 C Y N 235 DTR CH2 C Y N 236 DTR CZ3 C Y N 237 DTR CE3 C Y N 238 DTR CD2 C Y N 239 DTR C C N N 240 DTR O O N N 241 DTR OXT O N N 242 DTR H H N N 243 DTR H2 H N N 244 DTR HA H N N 245 DTR HB2 H N N 246 DTR HB3 H N N 247 DTR HD1 H N N 248 DTR HE1 H N N 249 DTR HZ2 H N N 250 DTR HH2 H N N 251 DTR HZ3 H N N 252 DTR HE3 H N N 253 DTR HXT H N N 254 DTY N N N N 255 DTY CA C N R 256 DTY C C N N 257 DTY O O N N 258 DTY CB C N N 259 DTY CG C Y N 260 DTY CD1 C Y N 261 DTY CD2 C Y N 262 DTY CE1 C Y N 263 DTY CE2 C Y N 264 DTY CZ C Y N 265 DTY OH O N N 266 DTY OXT O N N 267 DTY H H N N 268 DTY H2 H N N 269 DTY HA H N N 270 DTY HB2 H N N 271 DTY HB3 H N N 272 DTY HD1 H N N 273 DTY HD2 H N N 274 DTY HE1 H N N 275 DTY HE2 H N N 276 DTY HH H N N 277 DTY HXT H N N 278 GLN N N N N 279 GLN CA C N S 280 GLN C C N N 281 GLN O O N N 282 GLN CB C N N 283 GLN CG C N N 284 GLN CD C N N 285 GLN OE1 O N N 286 GLN NE2 N N N 287 GLN OXT O N N 288 GLN H H N N 289 GLN H2 H N N 290 GLN HA H N N 291 GLN HB2 H N N 292 GLN HB3 H N N 293 GLN HG2 H N N 294 GLN HG3 H N N 295 GLN HE21 H N N 296 GLN HE22 H N N 297 GLN HXT H N N 298 GLU N N N N 299 GLU CA C N S 300 GLU C C N N 301 GLU O O N N 302 GLU CB C N N 303 GLU CG C N N 304 GLU CD C N N 305 GLU OE1 O N N 306 GLU OE2 O N N 307 GLU OXT O N N 308 GLU H H N N 309 GLU H2 H N N 310 GLU HA H N N 311 GLU HB2 H N N 312 GLU HB3 H N N 313 GLU HG2 H N N 314 GLU HG3 H N N 315 GLU HE2 H N N 316 GLU HXT H N N 317 GLY N N N N 318 GLY CA C N N 319 GLY C C N N 320 GLY O O N N 321 GLY OXT O N N 322 GLY H H N N 323 GLY H2 H N N 324 GLY HA2 H N N 325 GLY HA3 H N N 326 GLY HXT H N N 327 GOL C1 C N N 328 GOL O1 O N N 329 GOL C2 C N N 330 GOL O2 O N N 331 GOL C3 C N N 332 GOL O3 O N N 333 GOL H11 H N N 334 GOL H12 H N N 335 GOL HO1 H N N 336 GOL H2 H N N 337 GOL HO2 H N N 338 GOL H31 H N N 339 GOL H32 H N N 340 GOL HO3 H N N 341 HIS N N N N 342 HIS CA C N S 343 HIS C C N N 344 HIS O O N N 345 HIS CB C N N 346 HIS CG C Y N 347 HIS ND1 N Y N 348 HIS CD2 C Y N 349 HIS CE1 C Y N 350 HIS NE2 N Y N 351 HIS OXT O N N 352 HIS H H N N 353 HIS H2 H N N 354 HIS HA H N N 355 HIS HB2 H N N 356 HIS HB3 H N N 357 HIS HD1 H N N 358 HIS HD2 H N N 359 HIS HE1 H N N 360 HIS HE2 H N N 361 HIS HXT H N N 362 HOH O O N N 363 HOH H1 H N N 364 HOH H2 H N N 365 ILE N N N N 366 ILE CA C N S 367 ILE C C N N 368 ILE O O N N 369 ILE CB C N S 370 ILE CG1 C N N 371 ILE CG2 C N N 372 ILE CD1 C N N 373 ILE OXT O N N 374 ILE H H N N 375 ILE H2 H N N 376 ILE HA H N N 377 ILE HB H N N 378 ILE HG12 H N N 379 ILE HG13 H N N 380 ILE HG21 H N N 381 ILE HG22 H N N 382 ILE HG23 H N N 383 ILE HD11 H N N 384 ILE HD12 H N N 385 ILE HD13 H N N 386 ILE HXT H N N 387 LEU N N N N 388 LEU CA C N S 389 LEU C C N N 390 LEU O O N N 391 LEU CB C N N 392 LEU CG C N N 393 LEU CD1 C N N 394 LEU CD2 C N N 395 LEU OXT O N N 396 LEU H H N N 397 LEU H2 H N N 398 LEU HA H N N 399 LEU HB2 H N N 400 LEU HB3 H N N 401 LEU HG H N N 402 LEU HD11 H N N 403 LEU HD12 H N N 404 LEU HD13 H N N 405 LEU HD21 H N N 406 LEU HD22 H N N 407 LEU HD23 H N N 408 LEU HXT H N N 409 LYS N N N N 410 LYS CA C N S 411 LYS C C N N 412 LYS O O N N 413 LYS CB C N N 414 LYS CG C N N 415 LYS CD C N N 416 LYS CE C N N 417 LYS NZ N N N 418 LYS OXT O N N 419 LYS H H N N 420 LYS H2 H N N 421 LYS HA H N N 422 LYS HB2 H N N 423 LYS HB3 H N N 424 LYS HG2 H N N 425 LYS HG3 H N N 426 LYS HD2 H N N 427 LYS HD3 H N N 428 LYS HE2 H N N 429 LYS HE3 H N N 430 LYS HZ1 H N N 431 LYS HZ2 H N N 432 LYS HZ3 H N N 433 LYS HXT H N N 434 MET N N N N 435 MET CA C N S 436 MET C C N N 437 MET O O N N 438 MET CB C N N 439 MET CG C N N 440 MET SD S N N 441 MET CE C N N 442 MET OXT O N N 443 MET H H N N 444 MET H2 H N N 445 MET HA H N N 446 MET HB2 H N N 447 MET HB3 H N N 448 MET HG2 H N N 449 MET HG3 H N N 450 MET HE1 H N N 451 MET HE2 H N N 452 MET HE3 H N N 453 MET HXT H N N 454 PHE N N N N 455 PHE CA C N S 456 PHE C C N N 457 PHE O O N N 458 PHE CB C N N 459 PHE CG C Y N 460 PHE CD1 C Y N 461 PHE CD2 C Y N 462 PHE CE1 C Y N 463 PHE CE2 C Y N 464 PHE CZ C Y N 465 PHE OXT O N N 466 PHE H H N N 467 PHE H2 H N N 468 PHE HA H N N 469 PHE HB2 H N N 470 PHE HB3 H N N 471 PHE HD1 H N N 472 PHE HD2 H N N 473 PHE HE1 H N N 474 PHE HE2 H N N 475 PHE HZ H N N 476 PHE HXT H N N 477 PRO N N N N 478 PRO CA C N S 479 PRO C C N N 480 PRO O O N N 481 PRO CB C N N 482 PRO CG C N N 483 PRO CD C N N 484 PRO OXT O N N 485 PRO H H N N 486 PRO HA H N N 487 PRO HB2 H N N 488 PRO HB3 H N N 489 PRO HG2 H N N 490 PRO HG3 H N N 491 PRO HD2 H N N 492 PRO HD3 H N N 493 PRO HXT H N N 494 SER N N N N 495 SER CA C N S 496 SER C C N N 497 SER O O N N 498 SER CB C N N 499 SER OG O N N 500 SER OXT O N N 501 SER H H N N 502 SER H2 H N N 503 SER HA H N N 504 SER HB2 H N N 505 SER HB3 H N N 506 SER HG H N N 507 SER HXT H N N 508 SO4 S S N N 509 SO4 O1 O N N 510 SO4 O2 O N N 511 SO4 O3 O N N 512 SO4 O4 O N N 513 THR N N N N 514 THR CA C N S 515 THR C C N N 516 THR O O N N 517 THR CB C N R 518 THR OG1 O N N 519 THR CG2 C N N 520 THR OXT O N N 521 THR H H N N 522 THR H2 H N N 523 THR HA H N N 524 THR HB H N N 525 THR HG1 H N N 526 THR HG21 H N N 527 THR HG22 H N N 528 THR HG23 H N N 529 THR HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DAL N CA sing N N 83 DAL N H sing N N 84 DAL N H2 sing N N 85 DAL CA CB sing N N 86 DAL CA C sing N N 87 DAL CA HA sing N N 88 DAL CB HB1 sing N N 89 DAL CB HB2 sing N N 90 DAL CB HB3 sing N N 91 DAL C O doub N N 92 DAL C OXT sing N N 93 DAL OXT HXT sing N N 94 DAR N CA sing N N 95 DAR N H sing N N 96 DAR N H2 sing N N 97 DAR CA CB sing N N 98 DAR CA C sing N N 99 DAR CA HA sing N N 100 DAR CB CG sing N N 101 DAR CB HB2 sing N N 102 DAR CB HB3 sing N N 103 DAR CG CD sing N N 104 DAR CG HG2 sing N N 105 DAR CG HG3 sing N N 106 DAR CD NE sing N N 107 DAR CD HD2 sing N N 108 DAR CD HD3 sing N N 109 DAR NE CZ sing N N 110 DAR NE HE sing N N 111 DAR CZ NH1 sing N N 112 DAR CZ NH2 doub N N 113 DAR NH1 HH11 sing N N 114 DAR NH1 HH12 sing N N 115 DAR NH2 HH21 sing N N 116 DAR NH2 HH22 sing N N 117 DAR C O doub N N 118 DAR C OXT sing N N 119 DAR OXT HXT sing N N 120 DGL N CA sing N N 121 DGL N H sing N N 122 DGL N H2 sing N N 123 DGL CA C sing N N 124 DGL CA CB sing N N 125 DGL CA HA sing N N 126 DGL C O doub N N 127 DGL C OXT sing N N 128 DGL CB CG sing N N 129 DGL CB HB2 sing N N 130 DGL CB HB3 sing N N 131 DGL CG CD sing N N 132 DGL CG HG2 sing N N 133 DGL CG HG3 sing N N 134 DGL CD OE1 doub N N 135 DGL CD OE2 sing N N 136 DGL OE2 HE2 sing N N 137 DGL OXT HXT sing N N 138 DLE N CA sing N N 139 DLE N H sing N N 140 DLE N H2 sing N N 141 DLE CA CB sing N N 142 DLE CA C sing N N 143 DLE CA HA sing N N 144 DLE CB CG sing N N 145 DLE CB HB2 sing N N 146 DLE CB HB3 sing N N 147 DLE CG CD1 sing N N 148 DLE CG CD2 sing N N 149 DLE CG HG sing N N 150 DLE CD1 HD11 sing N N 151 DLE CD1 HD12 sing N N 152 DLE CD1 HD13 sing N N 153 DLE CD2 HD21 sing N N 154 DLE CD2 HD22 sing N N 155 DLE CD2 HD23 sing N N 156 DLE C O doub N N 157 DLE C OXT sing N N 158 DLE OXT HXT sing N N 159 DLY N CA sing N N 160 DLY N H sing N N 161 DLY N H2 sing N N 162 DLY CA C sing N N 163 DLY CA CB sing N N 164 DLY CA HA sing N N 165 DLY C O doub N N 166 DLY C OXT sing N N 167 DLY CB CG sing N N 168 DLY CB HB2 sing N N 169 DLY CB HB3 sing N N 170 DLY CG CD sing N N 171 DLY CG HG2 sing N N 172 DLY CG HG3 sing N N 173 DLY CD CE sing N N 174 DLY CD HD2 sing N N 175 DLY CD HD3 sing N N 176 DLY CE NZ sing N N 177 DLY CE HE2 sing N N 178 DLY CE HE3 sing N N 179 DLY NZ HZ1 sing N N 180 DLY NZ HZ2 sing N N 181 DLY OXT HXT sing N N 182 DSG N CA sing N N 183 DSG N H sing N N 184 DSG N H2 sing N N 185 DSG CA C sing N N 186 DSG CA CB sing N N 187 DSG CA HA sing N N 188 DSG C O doub N N 189 DSG C OXT sing N N 190 DSG CB CG sing N N 191 DSG CB HB2 sing N N 192 DSG CB HB3 sing N N 193 DSG CG OD1 doub N N 194 DSG CG ND2 sing N N 195 DSG ND2 HD21 sing N N 196 DSG ND2 HD22 sing N N 197 DSG OXT HXT sing N N 198 DTH N CA sing N N 199 DTH N H sing N N 200 DTH N H2 sing N N 201 DTH CA CB sing N N 202 DTH CA C sing N N 203 DTH CA HA sing N N 204 DTH CB CG2 sing N N 205 DTH CB OG1 sing N N 206 DTH CB HB sing N N 207 DTH CG2 HG21 sing N N 208 DTH CG2 HG22 sing N N 209 DTH CG2 HG23 sing N N 210 DTH OG1 HG1 sing N N 211 DTH C O doub N N 212 DTH C OXT sing N N 213 DTH OXT HXT sing N N 214 DTR N CA sing N N 215 DTR N H sing N N 216 DTR N H2 sing N N 217 DTR CA CB sing N N 218 DTR CA C sing N N 219 DTR CA HA sing N N 220 DTR CB CG sing N N 221 DTR CB HB2 sing N N 222 DTR CB HB3 sing N N 223 DTR CG CD1 doub Y N 224 DTR CG CD2 sing Y N 225 DTR CD1 NE1 sing Y N 226 DTR CD1 HD1 sing N N 227 DTR NE1 CE2 sing Y N 228 DTR NE1 HE1 sing N N 229 DTR CE2 CZ2 doub Y N 230 DTR CE2 CD2 sing Y N 231 DTR CZ2 CH2 sing Y N 232 DTR CZ2 HZ2 sing N N 233 DTR CH2 CZ3 doub Y N 234 DTR CH2 HH2 sing N N 235 DTR CZ3 CE3 sing Y N 236 DTR CZ3 HZ3 sing N N 237 DTR CE3 CD2 doub Y N 238 DTR CE3 HE3 sing N N 239 DTR C O doub N N 240 DTR C OXT sing N N 241 DTR OXT HXT sing N N 242 DTY N CA sing N N 243 DTY N H sing N N 244 DTY N H2 sing N N 245 DTY CA C sing N N 246 DTY CA CB sing N N 247 DTY CA HA sing N N 248 DTY C O doub N N 249 DTY C OXT sing N N 250 DTY CB CG sing N N 251 DTY CB HB2 sing N N 252 DTY CB HB3 sing N N 253 DTY CG CD1 doub Y N 254 DTY CG CD2 sing Y N 255 DTY CD1 CE1 sing Y N 256 DTY CD1 HD1 sing N N 257 DTY CD2 CE2 doub Y N 258 DTY CD2 HD2 sing N N 259 DTY CE1 CZ doub Y N 260 DTY CE1 HE1 sing N N 261 DTY CE2 CZ sing Y N 262 DTY CE2 HE2 sing N N 263 DTY CZ OH sing N N 264 DTY OH HH sing N N 265 DTY OXT HXT sing N N 266 GLN N CA sing N N 267 GLN N H sing N N 268 GLN N H2 sing N N 269 GLN CA C sing N N 270 GLN CA CB sing N N 271 GLN CA HA sing N N 272 GLN C O doub N N 273 GLN C OXT sing N N 274 GLN CB CG sing N N 275 GLN CB HB2 sing N N 276 GLN CB HB3 sing N N 277 GLN CG CD sing N N 278 GLN CG HG2 sing N N 279 GLN CG HG3 sing N N 280 GLN CD OE1 doub N N 281 GLN CD NE2 sing N N 282 GLN NE2 HE21 sing N N 283 GLN NE2 HE22 sing N N 284 GLN OXT HXT sing N N 285 GLU N CA sing N N 286 GLU N H sing N N 287 GLU N H2 sing N N 288 GLU CA C sing N N 289 GLU CA CB sing N N 290 GLU CA HA sing N N 291 GLU C O doub N N 292 GLU C OXT sing N N 293 GLU CB CG sing N N 294 GLU CB HB2 sing N N 295 GLU CB HB3 sing N N 296 GLU CG CD sing N N 297 GLU CG HG2 sing N N 298 GLU CG HG3 sing N N 299 GLU CD OE1 doub N N 300 GLU CD OE2 sing N N 301 GLU OE2 HE2 sing N N 302 GLU OXT HXT sing N N 303 GLY N CA sing N N 304 GLY N H sing N N 305 GLY N H2 sing N N 306 GLY CA C sing N N 307 GLY CA HA2 sing N N 308 GLY CA HA3 sing N N 309 GLY C O doub N N 310 GLY C OXT sing N N 311 GLY OXT HXT sing N N 312 GOL C1 O1 sing N N 313 GOL C1 C2 sing N N 314 GOL C1 H11 sing N N 315 GOL C1 H12 sing N N 316 GOL O1 HO1 sing N N 317 GOL C2 O2 sing N N 318 GOL C2 C3 sing N N 319 GOL C2 H2 sing N N 320 GOL O2 HO2 sing N N 321 GOL C3 O3 sing N N 322 GOL C3 H31 sing N N 323 GOL C3 H32 sing N N 324 GOL O3 HO3 sing N N 325 HIS N CA sing N N 326 HIS N H sing N N 327 HIS N H2 sing N N 328 HIS CA C sing N N 329 HIS CA CB sing N N 330 HIS CA HA sing N N 331 HIS C O doub N N 332 HIS C OXT sing N N 333 HIS CB CG sing N N 334 HIS CB HB2 sing N N 335 HIS CB HB3 sing N N 336 HIS CG ND1 sing Y N 337 HIS CG CD2 doub Y N 338 HIS ND1 CE1 doub Y N 339 HIS ND1 HD1 sing N N 340 HIS CD2 NE2 sing Y N 341 HIS CD2 HD2 sing N N 342 HIS CE1 NE2 sing Y N 343 HIS CE1 HE1 sing N N 344 HIS NE2 HE2 sing N N 345 HIS OXT HXT sing N N 346 HOH O H1 sing N N 347 HOH O H2 sing N N 348 ILE N CA sing N N 349 ILE N H sing N N 350 ILE N H2 sing N N 351 ILE CA C sing N N 352 ILE CA CB sing N N 353 ILE CA HA sing N N 354 ILE C O doub N N 355 ILE C OXT sing N N 356 ILE CB CG1 sing N N 357 ILE CB CG2 sing N N 358 ILE CB HB sing N N 359 ILE CG1 CD1 sing N N 360 ILE CG1 HG12 sing N N 361 ILE CG1 HG13 sing N N 362 ILE CG2 HG21 sing N N 363 ILE CG2 HG22 sing N N 364 ILE CG2 HG23 sing N N 365 ILE CD1 HD11 sing N N 366 ILE CD1 HD12 sing N N 367 ILE CD1 HD13 sing N N 368 ILE OXT HXT sing N N 369 LEU N CA sing N N 370 LEU N H sing N N 371 LEU N H2 sing N N 372 LEU CA C sing N N 373 LEU CA CB sing N N 374 LEU CA HA sing N N 375 LEU C O doub N N 376 LEU C OXT sing N N 377 LEU CB CG sing N N 378 LEU CB HB2 sing N N 379 LEU CB HB3 sing N N 380 LEU CG CD1 sing N N 381 LEU CG CD2 sing N N 382 LEU CG HG sing N N 383 LEU CD1 HD11 sing N N 384 LEU CD1 HD12 sing N N 385 LEU CD1 HD13 sing N N 386 LEU CD2 HD21 sing N N 387 LEU CD2 HD22 sing N N 388 LEU CD2 HD23 sing N N 389 LEU OXT HXT sing N N 390 LYS N CA sing N N 391 LYS N H sing N N 392 LYS N H2 sing N N 393 LYS CA C sing N N 394 LYS CA CB sing N N 395 LYS CA HA sing N N 396 LYS C O doub N N 397 LYS C OXT sing N N 398 LYS CB CG sing N N 399 LYS CB HB2 sing N N 400 LYS CB HB3 sing N N 401 LYS CG CD sing N N 402 LYS CG HG2 sing N N 403 LYS CG HG3 sing N N 404 LYS CD CE sing N N 405 LYS CD HD2 sing N N 406 LYS CD HD3 sing N N 407 LYS CE NZ sing N N 408 LYS CE HE2 sing N N 409 LYS CE HE3 sing N N 410 LYS NZ HZ1 sing N N 411 LYS NZ HZ2 sing N N 412 LYS NZ HZ3 sing N N 413 LYS OXT HXT sing N N 414 MET N CA sing N N 415 MET N H sing N N 416 MET N H2 sing N N 417 MET CA C sing N N 418 MET CA CB sing N N 419 MET CA HA sing N N 420 MET C O doub N N 421 MET C OXT sing N N 422 MET CB CG sing N N 423 MET CB HB2 sing N N 424 MET CB HB3 sing N N 425 MET CG SD sing N N 426 MET CG HG2 sing N N 427 MET CG HG3 sing N N 428 MET SD CE sing N N 429 MET CE HE1 sing N N 430 MET CE HE2 sing N N 431 MET CE HE3 sing N N 432 MET OXT HXT sing N N 433 PHE N CA sing N N 434 PHE N H sing N N 435 PHE N H2 sing N N 436 PHE CA C sing N N 437 PHE CA CB sing N N 438 PHE CA HA sing N N 439 PHE C O doub N N 440 PHE C OXT sing N N 441 PHE CB CG sing N N 442 PHE CB HB2 sing N N 443 PHE CB HB3 sing N N 444 PHE CG CD1 doub Y N 445 PHE CG CD2 sing Y N 446 PHE CD1 CE1 sing Y N 447 PHE CD1 HD1 sing N N 448 PHE CD2 CE2 doub Y N 449 PHE CD2 HD2 sing N N 450 PHE CE1 CZ doub Y N 451 PHE CE1 HE1 sing N N 452 PHE CE2 CZ sing Y N 453 PHE CE2 HE2 sing N N 454 PHE CZ HZ sing N N 455 PHE OXT HXT sing N N 456 PRO N CA sing N N 457 PRO N CD sing N N 458 PRO N H sing N N 459 PRO CA C sing N N 460 PRO CA CB sing N N 461 PRO CA HA sing N N 462 PRO C O doub N N 463 PRO C OXT sing N N 464 PRO CB CG sing N N 465 PRO CB HB2 sing N N 466 PRO CB HB3 sing N N 467 PRO CG CD sing N N 468 PRO CG HG2 sing N N 469 PRO CG HG3 sing N N 470 PRO CD HD2 sing N N 471 PRO CD HD3 sing N N 472 PRO OXT HXT sing N N 473 SER N CA sing N N 474 SER N H sing N N 475 SER N H2 sing N N 476 SER CA C sing N N 477 SER CA CB sing N N 478 SER CA HA sing N N 479 SER C O doub N N 480 SER C OXT sing N N 481 SER CB OG sing N N 482 SER CB HB2 sing N N 483 SER CB HB3 sing N N 484 SER OG HG sing N N 485 SER OXT HXT sing N N 486 SO4 S O1 doub N N 487 SO4 S O2 doub N N 488 SO4 S O3 sing N N 489 SO4 S O4 sing N N 490 THR N CA sing N N 491 THR N H sing N N 492 THR N H2 sing N N 493 THR CA C sing N N 494 THR CA CB sing N N 495 THR CA HA sing N N 496 THR C O doub N N 497 THR C OXT sing N N 498 THR CB OG1 sing N N 499 THR CB CG2 sing N N 500 THR CB HB sing N N 501 THR OG1 HG1 sing N N 502 THR CG2 HG21 sing N N 503 THR CG2 HG22 sing N N 504 THR CG2 HG23 sing N N 505 THR OXT HXT sing N N 506 TYR N CA sing N N 507 TYR N H sing N N 508 TYR N H2 sing N N 509 TYR CA C sing N N 510 TYR CA CB sing N N 511 TYR CA HA sing N N 512 TYR C O doub N N 513 TYR C OXT sing N N 514 TYR CB CG sing N N 515 TYR CB HB2 sing N N 516 TYR CB HB3 sing N N 517 TYR CG CD1 doub Y N 518 TYR CG CD2 sing Y N 519 TYR CD1 CE1 sing Y N 520 TYR CD1 HD1 sing N N 521 TYR CD2 CE2 doub Y N 522 TYR CD2 HD2 sing N N 523 TYR CE1 CZ doub Y N 524 TYR CE1 HE1 sing N N 525 TYR CE2 CZ sing Y N 526 TYR CE2 HE2 sing N N 527 TYR CZ OH sing N N 528 TYR OH HH sing N N 529 TYR OXT HXT sing N N 530 VAL N CA sing N N 531 VAL N H sing N N 532 VAL N H2 sing N N 533 VAL CA C sing N N 534 VAL CA CB sing N N 535 VAL CA HA sing N N 536 VAL C O doub N N 537 VAL C OXT sing N N 538 VAL CB CG1 sing N N 539 VAL CB CG2 sing N N 540 VAL CB HB sing N N 541 VAL CG1 HG11 sing N N 542 VAL CG1 HG12 sing N N 543 VAL CG1 HG13 sing N N 544 VAL CG2 HG21 sing N N 545 VAL CG2 HG22 sing N N 546 VAL CG2 HG23 sing N N 547 VAL OXT HXT sing N N 548 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3EQS _pdbx_initial_refinement_model.details 'PDB ENTRY 3EQS' # _atom_sites.entry_id 3LNJ _atom_sites.fract_transf_matrix[1][1] 0.014498 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.004684 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021961 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_