HEADER HYDROLASE 02-FEB-10 3LNP TITLE CRYSTAL STRUCTURE OF AMIDOHYDROLASE FAMILY PROTEIN OLEI01672_1_465 TITLE 2 FROM OLEISPIRA ANTARCTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE FAMILY PROTEIN OLEI01672_1_465; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OLEI01672_1_465; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 188908; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM BARREL, BETA-FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,O.KAGAN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 09-OCT-24 3LNP 1 REMARK DBREF LINK REVDAT 2 25-DEC-13 3LNP 1 JRNL VERSN REVDAT 1 16-FEB-10 3LNP 0 JRNL AUTH M.KUBE,T.N.CHERNIKOVA,Y.AL-RAMAHI,A.BELOQUI,N.LOPEZ-CORTEZ, JRNL AUTH 2 M.E.GUAZZARONI,H.J.HEIPIEPER,S.KLAGES,O.R.KOTSYURBENKO, JRNL AUTH 3 I.LANGER,T.Y.NECHITAYLO,H.LUNSDORF,M.FERNANDEZ,S.JUAREZ, JRNL AUTH 4 S.CIORDIA,A.SINGER,O.KAGAN,O.EGOROVA,P.A.PETIT,P.STOGIOS, JRNL AUTH 5 Y.KIM,A.TCHIGVINTSEV,R.FLICK,R.DENARO,M.GENOVESE,J.P.ALBAR, JRNL AUTH 6 O.N.REVA,M.MARTINEZ-GOMARIZ,H.TRAN,M.FERRER,A.SAVCHENKO, JRNL AUTH 7 A.F.YAKUNIN,M.M.YAKIMOV,O.V.GOLYSHINA,R.REINHARDT, JRNL AUTH 8 P.N.GOLYSHIN JRNL TITL GENOME SEQUENCE AND FUNCTIONAL GENOMIC ANALYSIS OF THE JRNL TITL 2 OIL-DEGRADING BACTERIUM OLEISPIRA ANTARCTICA. JRNL REF NAT COMMUN V. 4 2156 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23877221 JRNL DOI 10.1038/NCOMMS3156 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2503 - 4.5216 1.00 3035 160 0.1376 0.1557 REMARK 3 2 4.5216 - 3.5901 1.00 2902 154 0.1216 0.1662 REMARK 3 3 3.5901 - 3.1367 1.00 2851 170 0.1526 0.1869 REMARK 3 4 3.1367 - 2.8500 1.00 2857 162 0.1672 0.1934 REMARK 3 5 2.8500 - 2.6458 0.99 2842 125 0.1589 0.1989 REMARK 3 6 2.6458 - 2.4899 1.00 2823 159 0.1563 0.2032 REMARK 3 7 2.4899 - 2.3652 0.99 2782 148 0.1555 0.2219 REMARK 3 8 2.3652 - 2.2623 0.99 2810 161 0.1560 0.1907 REMARK 3 9 2.2623 - 2.1752 0.99 2794 146 0.1712 0.2006 REMARK 3 10 2.1752 - 2.1002 0.99 2814 137 0.1879 0.2318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51860 REMARK 3 B22 (A**2) : -0.51860 REMARK 3 B33 (A**2) : 1.03710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3626 REMARK 3 ANGLE : 1.056 4962 REMARK 3 CHIRALITY : 0.077 566 REMARK 3 PLANARITY : 0.004 664 REMARK 3 DIHEDRAL : 18.588 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -2.1891 27.7230 6.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.2528 REMARK 3 T33: 0.1923 T12: 0.0148 REMARK 3 T13: -0.0119 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6647 L22: 0.5876 REMARK 3 L33: 0.5249 L12: -0.2670 REMARK 3 L13: -0.2718 L23: 0.1353 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.1186 S13: -0.0146 REMARK 3 S21: -0.0296 S22: -0.0706 S23: 0.1504 REMARK 3 S31: -0.0208 S32: -0.1491 S33: 0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXS, MLPHARE, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 % PEG8000, 0.2 M CALCIUM ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.83600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.91800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.91800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER BY OPERATORS X,Y,Z; Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 ASN A -2 REMARK 465 ALA A -1 REMARK 465 MSE A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 HIS A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 ILE A 464 REMARK 465 LYS A 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 462 O HOH A 620 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -47.29 73.50 REMARK 500 ALA A 101 81.31 -156.57 REMARK 500 HIS A 113 -63.33 -128.70 REMARK 500 HIS A 113 -63.33 -128.30 REMARK 500 HIS A 280 -78.80 91.42 REMARK 500 HIS A 280 -79.82 91.42 REMARK 500 ASP A 331 -165.55 69.51 REMARK 500 SER A 335 53.76 -142.97 REMARK 500 ASN A 336 -67.83 -144.22 REMARK 500 THR A 372 -87.96 -123.93 REMARK 500 CYS A 419 52.65 -159.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 472 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 304 OE1 REMARK 620 2 ASN A 336 OD1 88.3 REMARK 620 3 ASP A 338 OD1 152.5 85.2 REMARK 620 4 ASP A 338 OD2 157.7 106.9 48.0 REMARK 620 5 HOH A 604 O 82.2 83.5 123.3 83.4 REMARK 620 6 HOH A 605 O 88.5 88.6 64.7 107.6 168.0 REMARK 620 7 HOH A 606 O 85.5 169.4 104.2 76.9 87.1 99.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 471 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 331 OD2 REMARK 620 2 HOH A 481 O 76.9 REMARK 620 3 HOH A 596 O 89.2 84.9 REMARK 620 4 HOH A 694 O 167.1 96.8 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 475 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40080 RELATED DB: TARGETDB DBREF 3LNP A -3 465 PDB 3LNP 3LNP -3 465 SEQRES 1 A 468 SER ASN ALA MSE SER LYS ASP SER GLU SER ASN LEU ALA SEQRES 2 A 468 GLN ARG GLN SER GLN PRO LYS ALA HIS ALA ASP LEU ARG SEQRES 3 A 468 ILE ASN SER HIS TRP ILE ILE PRO ILE GLU ASN THR THR SEQRES 4 A 468 ASP HIS ASN LEU VAL SER ASN ILE LEU ILE ASP HIS CYS SEQRES 5 A 468 LEU LEU ILE LYS ASP GLY ILE ILE LEU ALA ILE GLU PRO SEQRES 6 A 468 GLN SER SER CYS GLN ILE PRO ALA THR GLU THR LEU ASP SEQRES 7 A 468 LEU GLY GLN GLN VAL LEU MSE PRO GLY TRP VAL ASN ALA SEQRES 8 A 468 HIS GLY HIS ALA ALA MSE SER LEU PHE ARG GLY LEU ALA SEQRES 9 A 468 ASP ASP LEU PRO LEU MSE THR TRP LEU GLN GLU HIS VAL SEQRES 10 A 468 TRP PRO ALA GLU ALA GLN HIS VAL ASP GLU HIS PHE VAL SEQRES 11 A 468 LYS GLN GLY THR GLU LEU ALA ILE ALA GLU MSE ILE GLN SEQRES 12 A 468 SER GLY THR THR THR PHE ALA ASP MSE TYR PHE TYR PRO SEQRES 13 A 468 GLN GLN SER GLY GLU ALA ALA LEU ALA ALA GLY ILE ARG SEQRES 14 A 468 ALA VAL CYS PHE ALA PRO VAL LEU ASP PHE PRO THR ASN SEQRES 15 A 468 TYR ALA GLN ASN ALA ASP GLU TYR ILE ARG LYS ALA ILE SEQRES 16 A 468 GLU CYS ASN ASP ARG PHE ASN ASN HIS PRO MSE ASN GLU SEQRES 17 A 468 GLN GLY LEU VAL GLN ILE GLY PHE GLY PRO HIS ALA PRO SEQRES 18 A 468 TYR THR VAL SER ASP GLU PRO LEU LYS GLU ILE THR MSE SEQRES 19 A 468 LEU SER ASP GLN LEU ASP MSE PRO VAL GLN ILE HIS LEU SEQRES 20 A 468 HIS GLU THR ASP PHE GLU VAL SER GLU SER LEU GLU THR SEQRES 21 A 468 PHE ASN LYS ARG PRO THR GLN ARG LEU ALA ASP ILE GLY SEQRES 22 A 468 PHE LEU ASN GLU ARG VAL SER CYS VAL HIS MSE THR GLN SEQRES 23 A 468 VAL ASP ASP GLY ASP ILE LYS ILE LEU GLN LYS THR GLY SEQRES 24 A 468 ALA SER ILE ILE HIS CYS PRO GLU SER ASN LEU LYS LEU SEQRES 25 A 468 ALA SER GLY PHE CYS PRO ILE ALA LYS LEU SER ALA ALA SEQRES 26 A 468 ASN ILE PRO LEU ALA ILE GLY THR ASP GLY ALA ALA SER SEQRES 27 A 468 ASN ASN ASP LEU ASP MSE PHE SER GLU THR LYS THR ALA SEQRES 28 A 468 ALA LEU LEU ALA LYS GLY VAL SER GLN ASP ALA SER ALA SEQRES 29 A 468 ILE PRO ALA ILE GLU ALA LEU THR MSE ALA THR LEU GLY SEQRES 30 A 468 GLY ALA ARG ALA LEU GLY ILE ASP ASP ILE THR GLY SER SEQRES 31 A 468 LEU LYS PRO GLY LYS ALA ALA ASP ILE GLN ALA ILE ASP SEQRES 32 A 468 LEU ASN THR LEU SER SER GLN PRO VAL PHE ASP PRO VAL SEQRES 33 A 468 SER HIS MSE VAL TYR CYS THR LYS SER THR GLN VAL SER SEQRES 34 A 468 HIS VAL TRP VAL ASN GLY ARG CYS LEU LEU LYS ASN GLY SEQRES 35 A 468 GLU LEU THR THR LEU ASN GLU GLU THR LEU ILE ASN HIS SEQRES 36 A 468 ALA LYS ALA TRP ALA SER ALA ILE ARG THR PRO ILE LYS MODRES 3LNP MSE A 81 MET SELENOMETHIONINE MODRES 3LNP MSE A 93 MET SELENOMETHIONINE MODRES 3LNP MSE A 107 MET SELENOMETHIONINE MODRES 3LNP MSE A 138 MET SELENOMETHIONINE MODRES 3LNP MSE A 149 MET SELENOMETHIONINE MODRES 3LNP MSE A 203 MET SELENOMETHIONINE MODRES 3LNP MSE A 231 MET SELENOMETHIONINE MODRES 3LNP MSE A 238 MET SELENOMETHIONINE MODRES 3LNP MSE A 281 MET SELENOMETHIONINE MODRES 3LNP MSE A 341 MET SELENOMETHIONINE MODRES 3LNP MSE A 370 MET SELENOMETHIONINE MODRES 3LNP MSE A 416 MET SELENOMETHIONINE HET MSE A 81 8 HET MSE A 93 8 HET MSE A 107 8 HET MSE A 138 8 HET MSE A 149 8 HET MSE A 203 16 HET MSE A 231 8 HET MSE A 238 8 HET MSE A 281 16 HET MSE A 341 8 HET MSE A 370 8 HET MSE A 416 8 HET CA A 471 1 HET CA A 472 1 HET ACY A 473 4 HET ACY A 474 4 HET PEG A 475 7 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *312(H2 O) HELIX 1 1 HIS A 90 ARG A 97 5 8 HELIX 2 2 PRO A 105 HIS A 113 1 9 HELIX 3 3 HIS A 113 VAL A 122 1 10 HELIX 4 4 ASP A 123 SER A 141 1 19 HELIX 5 5 TYR A 152 GLY A 164 1 13 HELIX 6 6 ASN A 183 ASN A 200 1 18 HELIX 7 7 HIS A 201 GLU A 205 5 5 HELIX 8 8 SER A 222 ASP A 237 1 16 HELIX 9 9 THR A 247 ASN A 259 1 13 HELIX 10 10 ARG A 261 ILE A 269 1 9 HELIX 11 11 ASP A 285 GLY A 296 1 12 HELIX 12 12 CYS A 302 LEU A 309 1 8 HELIX 13 13 PRO A 315 ALA A 322 1 8 HELIX 14 14 ASP A 340 GLN A 357 1 18 HELIX 15 15 PRO A 363 THR A 372 1 10 HELIX 16 16 THR A 372 LEU A 379 1 8 HELIX 17 17 THR A 403 GLN A 407 5 5 HELIX 18 18 ASP A 411 CYS A 419 1 9 HELIX 19 19 LYS A 421 THR A 423 5 3 HELIX 20 20 ASN A 445 THR A 462 1 18 SHEET 1 A 4 ILE A 55 PRO A 61 0 SHEET 2 A 4 LEU A 44 LYS A 52 -1 N LEU A 50 O LEU A 57 SHEET 3 A 4 ALA A 19 ILE A 28 -1 N LEU A 21 O ILE A 51 SHEET 4 A 4 ALA A 69 ASP A 74 1 O LEU A 73 N ASN A 24 SHEET 1 B 8 ILE A 55 PRO A 61 0 SHEET 2 B 8 LEU A 44 LYS A 52 -1 N LEU A 50 O LEU A 57 SHEET 3 B 8 ALA A 19 ILE A 28 -1 N LEU A 21 O ILE A 51 SHEET 4 B 8 GLN A 78 PRO A 82 1 O LEU A 80 N TRP A 27 SHEET 5 B 8 ILE A 396 ASP A 400 -1 O ILE A 399 N VAL A 79 SHEET 6 B 8 VAL A 425 VAL A 430 -1 O SER A 426 N ALA A 398 SHEET 7 B 8 ARG A 433 LYS A 437 -1 O LEU A 435 N VAL A 428 SHEET 8 B 8 GLU A 440 LEU A 441 -1 O GLU A 440 N LYS A 437 SHEET 1 C 4 TRP A 84 ASN A 86 0 SHEET 2 C 4 THR A 143 ASP A 148 1 O ALA A 147 N ASN A 86 SHEET 3 C 4 ARG A 166 VAL A 173 1 O PHE A 170 N ASP A 148 SHEET 4 C 4 VAL A 209 PRO A 215 1 O GLY A 214 N ALA A 171 SHEET 1 D 4 VAL A 240 LEU A 244 0 SHEET 2 D 4 VAL A 276 HIS A 280 1 O VAL A 279 N ILE A 242 SHEET 3 D 4 SER A 298 HIS A 301 1 O SER A 298 N CYS A 278 SHEET 4 D 4 LEU A 326 ILE A 328 1 O ALA A 327 N HIS A 301 LINK C LEU A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N PRO A 82 1555 1555 1.34 LINK C ALA A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N SER A 94 1555 1555 1.33 LINK C LEU A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N THR A 108 1555 1555 1.33 LINK C GLU A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ILE A 139 1555 1555 1.33 LINK C ASP A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N TYR A 150 1555 1555 1.32 LINK C PRO A 202 N AMSE A 203 1555 1555 1.32 LINK C PRO A 202 N BMSE A 203 1555 1555 1.33 LINK C AMSE A 203 N ASN A 204 1555 1555 1.33 LINK C BMSE A 203 N ASN A 204 1555 1555 1.33 LINK C THR A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N LEU A 232 1555 1555 1.33 LINK C ASP A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N PRO A 239 1555 1555 1.34 LINK C HIS A 280 N AMSE A 281 1555 1555 1.33 LINK C HIS A 280 N BMSE A 281 1555 1555 1.33 LINK C AMSE A 281 N THR A 282 1555 1555 1.33 LINK C BMSE A 281 N THR A 282 1555 1555 1.33 LINK C ASP A 340 N MSE A 341 1555 1555 1.34 LINK C MSE A 341 N PHE A 342 1555 1555 1.33 LINK C THR A 369 N MSE A 370 1555 1555 1.33 LINK C MSE A 370 N ALA A 371 1555 1555 1.33 LINK C HIS A 415 N MSE A 416 1555 1555 1.34 LINK C MSE A 416 N VAL A 417 1555 1555 1.32 LINK OE1 GLU A 304 CA CA A 472 1555 1555 2.32 LINK OD2 ASP A 331 CA CA A 471 1555 1555 2.35 LINK OD1 ASN A 336 CA CA A 472 1555 1555 2.26 LINK OD1 ASP A 338 CA CA A 472 1555 1555 2.55 LINK OD2 ASP A 338 CA CA A 472 1555 1555 2.82 LINK CA CA A 471 O HOH A 481 1555 1555 2.46 LINK CA CA A 471 O HOH A 596 1555 1555 2.30 LINK CA CA A 471 O HOH A 694 1555 1555 2.27 LINK CA CA A 472 O HOH A 604 1555 1555 2.40 LINK CA CA A 472 O HOH A 605 1555 1555 2.45 LINK CA CA A 472 O HOH A 606 1555 1555 2.41 CISPEP 1 ASN A 336 ASN A 337 0 10.92 CISPEP 2 GLN A 407 PRO A 408 0 -4.56 SITE 1 AC1 7 HIS A 88 HIS A 90 HIS A 243 ASP A 331 SITE 2 AC1 7 HOH A 481 HOH A 596 HOH A 694 SITE 1 AC2 6 GLU A 304 ASN A 336 ASP A 338 HOH A 604 SITE 2 AC2 6 HOH A 605 HOH A 606 SITE 1 AC3 4 HIS A 18 ILE A 67 ALA A 267 HOH A 773 SITE 1 AC4 8 PRO A 315 ALA A 317 LYS A 318 VAL A 355 SITE 2 AC4 8 SER A 356 HOH A 563 HOH A 672 HOH A 760 SITE 1 AC5 1 HOH A 776 CRYST1 77.902 77.902 143.754 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012837 0.007411 0.000000 0.00000 SCALE2 0.000000 0.014822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006956 0.00000 CONECT 488 494 CONECT 494 488 495 CONECT 495 494 496 498 CONECT 496 495 497 502 CONECT 497 496 CONECT 498 495 499 CONECT 499 498 500 CONECT 500 499 501 CONECT 501 500 CONECT 502 496 CONECT 578 581 CONECT 581 578 582 CONECT 582 581 583 585 CONECT 583 582 584 589 CONECT 584 583 CONECT 585 582 586 CONECT 586 585 587 CONECT 587 586 588 CONECT 588 587 CONECT 589 583 CONECT 675 681 CONECT 681 675 682 CONECT 682 681 683 685 CONECT 683 682 684 689 CONECT 684 683 CONECT 685 682 686 CONECT 686 685 687 CONECT 687 686 688 CONECT 688 687 CONECT 689 683 CONECT 939 946 CONECT 946 939 947 CONECT 947 946 948 950 CONECT 948 947 949 954 CONECT 949 948 CONECT 950 947 951 CONECT 951 950 952 CONECT 952 951 953 CONECT 953 952 CONECT 954 948 CONECT 1020 1026 CONECT 1026 1020 1027 CONECT 1027 1026 1028 1030 CONECT 1028 1027 1029 1034 CONECT 1029 1028 CONECT 1030 1027 1031 CONECT 1031 1030 1032 CONECT 1032 1031 1033 CONECT 1033 1032 CONECT 1034 1028 CONECT 1462 1467 1468 CONECT 1467 1462 1469 CONECT 1468 1462 1470 CONECT 1469 1467 1471 1475 CONECT 1470 1468 1472 1476 CONECT 1471 1469 1473 1483 CONECT 1472 1470 1474 1483 CONECT 1473 1471 CONECT 1474 1472 CONECT 1475 1469 1477 CONECT 1476 1470 1478 CONECT 1477 1475 1479 CONECT 1478 1476 1480 CONECT 1479 1477 1481 CONECT 1480 1478 1482 CONECT 1481 1479 CONECT 1482 1480 CONECT 1483 1471 1472 CONECT 1694 1699 CONECT 1699 1694 1700 CONECT 1700 1699 1701 1703 CONECT 1701 1700 1702 1707 CONECT 1702 1701 CONECT 1703 1700 1704 CONECT 1704 1703 1705 CONECT 1705 1704 1706 CONECT 1706 1705 CONECT 1707 1701 CONECT 1748 1754 CONECT 1754 1748 1755 CONECT 1755 1754 1756 1758 CONECT 1756 1755 1757 1762 CONECT 1757 1756 CONECT 1758 1755 1759 CONECT 1759 1758 1760 CONECT 1760 1759 1761 CONECT 1761 1760 CONECT 1762 1756 CONECT 2112 2120 2121 CONECT 2120 2112 2122 CONECT 2121 2112 2123 CONECT 2122 2120 2124 2128 CONECT 2123 2121 2125 2129 CONECT 2124 2122 2126 2136 CONECT 2125 2123 2127 2136 CONECT 2126 2124 CONECT 2127 2125 CONECT 2128 2122 2130 CONECT 2129 2123 2131 CONECT 2130 2128 2132 CONECT 2131 2129 2133 CONECT 2132 2130 2134 CONECT 2133 2131 2135 CONECT 2134 2132 CONECT 2135 2133 CONECT 2136 2124 2125 CONECT 2306 3526 CONECT 2494 3525 CONECT 2521 3526 CONECT 2537 3526 CONECT 2538 3526 CONECT 2549 2555 CONECT 2555 2549 2556 CONECT 2556 2555 2557 2559 CONECT 2557 2556 2558 2563 CONECT 2558 2557 CONECT 2559 2556 2560 CONECT 2560 2559 2561 CONECT 2561 2560 2562 CONECT 2562 2561 CONECT 2563 2557 CONECT 2769 2774 CONECT 2774 2769 2775 CONECT 2775 2774 2776 2778 CONECT 2776 2775 2777 2782 CONECT 2777 2776 CONECT 2778 2775 2779 CONECT 2779 2778 2780 CONECT 2780 2779 2781 CONECT 2781 2780 CONECT 2782 2776 CONECT 3114 3122 CONECT 3122 3114 3123 CONECT 3123 3122 3124 3126 CONECT 3124 3123 3125 3130 CONECT 3125 3124 CONECT 3126 3123 3127 CONECT 3127 3126 3128 CONECT 3128 3127 3129 CONECT 3129 3128 CONECT 3130 3124 CONECT 3525 2494 3553 3668 3765 CONECT 3526 2306 2521 2537 2538 CONECT 3526 3676 3677 3678 CONECT 3527 3528 3529 3530 CONECT 3528 3527 CONECT 3529 3527 CONECT 3530 3527 CONECT 3531 3532 3533 3534 CONECT 3532 3531 CONECT 3533 3531 CONECT 3534 3531 CONECT 3535 3536 3537 CONECT 3536 3535 CONECT 3537 3535 3538 CONECT 3538 3537 3539 CONECT 3539 3538 3540 CONECT 3540 3539 3541 CONECT 3541 3540 CONECT 3553 3525 CONECT 3668 3525 CONECT 3676 3526 CONECT 3677 3526 CONECT 3678 3526 CONECT 3765 3525 MASTER 358 0 17 20 20 0 8 6 3692 1 165 36 END