HEADER HYDROLASE 02-FEB-10 3LNP TITLE CRYSTAL STRUCTURE OF AMIDOHYDROLASE FAMILY PROTEIN OLEI01672_1_465 TITLE 2 FROM OLEISPIRA ANTARCTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMIDOHYDROLASE FAMILY PROTEIN OLEI01672_1_465; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OLEI01672_1_465; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OLEISPIRA ANTARCTICA; SOURCE 3 ORGANISM_TAXID: 188908; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TIM BARREL, BETA-FOLD, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,O.KAGAN,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 09-OCT-24 3LNP 1 REMARK DBREF LINK REVDAT 2 25-DEC-13 3LNP 1 JRNL VERSN REVDAT 1 16-FEB-10 3LNP 0 JRNL AUTH M.KUBE,T.N.CHERNIKOVA,Y.AL-RAMAHI,A.BELOQUI,N.LOPEZ-CORTEZ, JRNL AUTH 2 M.E.GUAZZARONI,H.J.HEIPIEPER,S.KLAGES,O.R.KOTSYURBENKO, JRNL AUTH 3 I.LANGER,T.Y.NECHITAYLO,H.LUNSDORF,M.FERNANDEZ,S.JUAREZ, JRNL AUTH 4 S.CIORDIA,A.SINGER,O.KAGAN,O.EGOROVA,P.A.PETIT,P.STOGIOS, JRNL AUTH 5 Y.KIM,A.TCHIGVINTSEV,R.FLICK,R.DENARO,M.GENOVESE,J.P.ALBAR, JRNL AUTH 6 O.N.REVA,M.MARTINEZ-GOMARIZ,H.TRAN,M.FERRER,A.SAVCHENKO, JRNL AUTH 7 A.F.YAKUNIN,M.M.YAKIMOV,O.V.GOLYSHINA,R.REINHARDT, JRNL AUTH 8 P.N.GOLYSHIN JRNL TITL GENOME SEQUENCE AND FUNCTIONAL GENOMIC ANALYSIS OF THE JRNL TITL 2 OIL-DEGRADING BACTERIUM OLEISPIRA ANTARCTICA. JRNL REF NAT COMMUN V. 4 2156 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23877221 JRNL DOI 10.1038/NCOMMS3156 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 30032 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1522 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2503 - 4.5216 1.00 3035 160 0.1376 0.1557 REMARK 3 2 4.5216 - 3.5901 1.00 2902 154 0.1216 0.1662 REMARK 3 3 3.5901 - 3.1367 1.00 2851 170 0.1526 0.1869 REMARK 3 4 3.1367 - 2.8500 1.00 2857 162 0.1672 0.1934 REMARK 3 5 2.8500 - 2.6458 0.99 2842 125 0.1589 0.1989 REMARK 3 6 2.6458 - 2.4899 1.00 2823 159 0.1563 0.2032 REMARK 3 7 2.4899 - 2.3652 0.99 2782 148 0.1555 0.2219 REMARK 3 8 2.3652 - 2.2623 0.99 2810 161 0.1560 0.1907 REMARK 3 9 2.2623 - 2.1752 0.99 2794 146 0.1712 0.2006 REMARK 3 10 2.1752 - 2.1002 0.99 2814 137 0.1879 0.2318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 47.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51860 REMARK 3 B22 (A**2) : -0.51860 REMARK 3 B33 (A**2) : 1.03710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3626 REMARK 3 ANGLE : 1.056 4962 REMARK 3 CHIRALITY : 0.077 566 REMARK 3 PLANARITY : 0.004 664 REMARK 3 DIHEDRAL : 18.588 1322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -2.1891 27.7230 6.8906 REMARK 3 T TENSOR REMARK 3 T11: 0.1313 T22: 0.2528 REMARK 3 T33: 0.1923 T12: 0.0148 REMARK 3 T13: -0.0119 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.6647 L22: 0.5876 REMARK 3 L33: 0.5249 L12: -0.2670 REMARK 3 L13: -0.2718 L23: 0.1353 REMARK 3 S TENSOR REMARK 3 S11: 0.0670 S12: -0.1186 S13: -0.0146 REMARK 3 S21: -0.0296 S22: -0.0706 S23: 0.1504 REMARK 3 S31: -0.0208 S32: -0.1491 S33: 0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LNP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30246 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXS, MLPHARE, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9 % PEG8000, 0.2 M CALCIUM ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE PH6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.83600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.91800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.91800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER BY OPERATORS X,Y,Z; Y,X,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -3 REMARK 465 ASN A -2 REMARK 465 ALA A -1 REMARK 465 MSE A 0 REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 GLN A 10 REMARK 465 ARG A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 PRO A 15 REMARK 465 LYS A 16 REMARK 465 THR A 35 REMARK 465 ASP A 36 REMARK 465 HIS A 37 REMARK 465 ASN A 38 REMARK 465 LEU A 39 REMARK 465 ILE A 464 REMARK 465 LYS A 465 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 462 O HOH A 620 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 31 -47.29 73.50 REMARK 500 ALA A 101 81.31 -156.57 REMARK 500 HIS A 113 -63.33 -128.70 REMARK 500 HIS A 113 -63.33 -128.30 REMARK 500 HIS A 280 -78.80 91.42 REMARK 500 HIS A 280 -79.82 91.42 REMARK 500 ASP A 331 -165.55 69.51 REMARK 500 SER A 335 53.76 -142.97 REMARK 500 ASN A 336 -67.83 -144.22 REMARK 500 THR A 372 -87.96 -123.93 REMARK 500 CYS A 419 52.65 -159.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 472 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 304 OE1 REMARK 620 2 ASN A 336 OD1 88.3 REMARK 620 3 ASP A 338 OD1 152.5 85.2 REMARK 620 4 ASP A 338 OD2 157.7 106.9 48.0 REMARK 620 5 HOH A 604 O 82.2 83.5 123.3 83.4 REMARK 620 6 HOH A 605 O 88.5 88.6 64.7 107.6 168.0 REMARK 620 7 HOH A 606 O 85.5 169.4 104.2 76.9 87.1 99.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 471 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 331 OD2 REMARK 620 2 HOH A 481 O 76.9 REMARK 620 3 HOH A 596 O 89.2 84.9 REMARK 620 4 HOH A 694 O 167.1 96.8 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 471 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 472 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 473 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 474 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 475 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC40080 RELATED DB: TARGETDB DBREF 3LNP A -3 465 PDB 3LNP 3LNP -3 465 SEQRES 1 A 468 SER ASN ALA MSE SER LYS ASP SER GLU SER ASN LEU ALA SEQRES 2 A 468 GLN ARG GLN SER GLN PRO LYS ALA HIS ALA ASP LEU ARG SEQRES 3 A 468 ILE ASN SER HIS TRP ILE ILE PRO ILE GLU ASN THR THR SEQRES 4 A 468 ASP HIS ASN LEU VAL SER ASN ILE LEU ILE ASP HIS CYS SEQRES 5 A 468 LEU LEU ILE LYS ASP GLY ILE ILE LEU ALA ILE GLU PRO SEQRES 6 A 468 GLN SER SER CYS GLN ILE PRO ALA THR GLU THR LEU ASP SEQRES 7 A 468 LEU GLY GLN GLN VAL LEU MSE PRO GLY TRP VAL ASN ALA SEQRES 8 A 468 HIS GLY HIS ALA ALA MSE SER LEU PHE ARG GLY LEU ALA SEQRES 9 A 468 ASP ASP LEU PRO LEU MSE THR TRP LEU GLN GLU HIS VAL SEQRES 10 A 468 TRP PRO ALA GLU ALA GLN HIS VAL ASP GLU HIS PHE VAL SEQRES 11 A 468 LYS GLN GLY THR GLU LEU ALA ILE ALA GLU MSE ILE GLN SEQRES 12 A 468 SER GLY THR THR THR PHE ALA ASP MSE TYR PHE TYR PRO SEQRES 13 A 468 GLN GLN SER GLY GLU ALA ALA LEU ALA ALA GLY ILE ARG SEQRES 14 A 468 ALA VAL CYS PHE ALA PRO VAL LEU ASP PHE PRO THR ASN SEQRES 15 A 468 TYR ALA GLN ASN ALA ASP GLU TYR ILE ARG LYS ALA ILE SEQRES 16 A 468 GLU CYS ASN ASP ARG PHE ASN ASN HIS PRO MSE ASN GLU SEQRES 17 A 468 GLN GLY LEU VAL GLN ILE GLY PHE GLY PRO HIS ALA PRO SEQRES 18 A 468 TYR THR VAL SER ASP GLU PRO LEU LYS GLU ILE THR MSE SEQRES 19 A 468 LEU SER ASP GLN LEU ASP MSE PRO VAL GLN ILE HIS LEU SEQRES 20 A 468 HIS GLU THR ASP PHE GLU VAL SER GLU SER LEU GLU THR SEQRES 21 A 468 PHE ASN LYS ARG PRO THR GLN ARG LEU ALA ASP ILE GLY SEQRES 22 A 468 PHE LEU ASN GLU ARG VAL SER CYS VAL HIS MSE THR GLN SEQRES 23 A 468 VAL ASP ASP GLY ASP ILE LYS ILE LEU GLN LYS THR GLY SEQRES 24 A 468 ALA SER ILE ILE HIS CYS PRO GLU SER ASN LEU LYS LEU SEQRES 25 A 468 ALA SER GLY PHE CYS PRO ILE ALA LYS LEU SER ALA ALA SEQRES 26 A 468 ASN ILE PRO LEU ALA ILE GLY THR ASP GLY ALA ALA SER SEQRES 27 A 468 ASN ASN ASP LEU ASP MSE PHE SER GLU THR LYS THR ALA SEQRES 28 A 468 ALA LEU LEU ALA LYS GLY VAL SER GLN ASP ALA SER ALA SEQRES 29 A 468 ILE PRO ALA ILE GLU ALA LEU THR MSE ALA THR LEU GLY SEQRES 30 A 468 GLY ALA ARG ALA LEU GLY ILE ASP ASP ILE THR GLY SER SEQRES 31 A 468 LEU LYS PRO GLY LYS ALA ALA ASP ILE GLN ALA ILE ASP SEQRES 32 A 468 LEU ASN THR LEU SER SER GLN PRO VAL PHE ASP PRO VAL SEQRES 33 A 468 SER HIS MSE VAL TYR CYS THR LYS SER THR GLN VAL SER SEQRES 34 A 468 HIS VAL TRP VAL ASN GLY ARG CYS LEU LEU LYS ASN GLY SEQRES 35 A 468 GLU LEU THR THR LEU ASN GLU GLU THR LEU ILE ASN HIS SEQRES 36 A 468 ALA LYS ALA TRP ALA SER ALA ILE ARG THR PRO ILE LYS MODRES 3LNP MSE A 81 MET SELENOMETHIONINE MODRES 3LNP MSE A 93 MET SELENOMETHIONINE MODRES 3LNP MSE A 107 MET SELENOMETHIONINE MODRES 3LNP MSE A 138 MET SELENOMETHIONINE MODRES 3LNP MSE A 149 MET SELENOMETHIONINE MODRES 3LNP MSE A 203 MET SELENOMETHIONINE MODRES 3LNP MSE A 231 MET SELENOMETHIONINE MODRES 3LNP MSE A 238 MET SELENOMETHIONINE MODRES 3LNP MSE A 281 MET SELENOMETHIONINE MODRES 3LNP MSE A 341 MET SELENOMETHIONINE MODRES 3LNP MSE A 370 MET SELENOMETHIONINE MODRES 3LNP MSE A 416 MET SELENOMETHIONINE HET MSE A 81 8 HET MSE A 93 8 HET MSE A 107 8 HET MSE A 138 8 HET MSE A 149 8 HET MSE A 203 16 HET MSE A 231 8 HET MSE A 238 8 HET MSE A 281 16 HET MSE A 341 8 HET MSE A 370 8 HET MSE A 416 8 HET CA A 471 1 HET CA A 472 1 HET ACY A 473 4 HET ACY A 474 4 HET PEG A 475 7 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 6 PEG C4 H10 O3 FORMUL 7 HOH *312(H2 O) HELIX 1 1 HIS A 90 ARG A 97 5 8 HELIX 2 2 PRO A 105 HIS A 113 1 9 HELIX 3 3 HIS A 113 VAL A 122 1 10 HELIX 4 4 ASP A 123 SER A 141 1 19 HELIX 5 5 TYR A 152 GLY A 164 1 13 HELIX 6 6 ASN A 183 ASN A 200 1 18 HELIX 7 7 HIS A 201 GLU A 205 5 5 HELIX 8 8 SER A 222 ASP A 237 1 16 HELIX 9 9 THR A 247 ASN A 259 1 13 HELIX 10 10 ARG A 261 ILE A 269 1 9 HELIX 11 11 ASP A 285 GLY A 296 1 12 HELIX 12 12 CYS A 302 LEU A 309 1 8 HELIX 13 13 PRO A 315 ALA A 322 1 8 HELIX 14 14 ASP A 340 GLN A 357 1 18 HELIX 15 15 PRO A 363 THR A 372 1 10 HELIX 16 16 THR A 372 LEU A 379 1 8 HELIX 17 17 THR A 403 GLN A 407 5 5 HELIX 18 18 ASP A 411 CYS A 419 1 9 HELIX 19 19 LYS A 421 THR A 423 5 3 HELIX 20 20 ASN A 445 THR A 462 1 18 SHEET 1 A 4 ILE A 55 PRO A 61 0 SHEET 2 A 4 LEU A 44 LYS A 52 -1 N LEU A 50 O LEU A 57 SHEET 3 A 4 ALA A 19 ILE A 28 -1 N LEU A 21 O ILE A 51 SHEET 4 A 4 ALA A 69 ASP A 74 1 O LEU A 73 N ASN A 24 SHEET 1 B 8 ILE A 55 PRO A 61 0 SHEET 2 B 8 LEU A 44 LYS A 52 -1 N LEU A 50 O LEU A 57 SHEET 3 B 8 ALA A 19 ILE A 28 -1 N LEU A 21 O ILE A 51 SHEET 4 B 8 GLN A 78 PRO A 82 1 O LEU A 80 N TRP A 27 SHEET 5 B 8 ILE A 396 ASP A 400 -1 O ILE A 399 N VAL A 79 SHEET 6 B 8 VAL A 425 VAL A 430 -1 O SER A 426 N ALA A 398 SHEET 7 B 8 ARG A 433 LYS A 437 -1 O LEU A 435 N VAL A 428 SHEET 8 B 8 GLU A 440 LEU A 441 -1 O GLU A 440 N LYS A 437 SHEET 1 C 4 TRP A 84 ASN A 86 0 SHEET 2 C 4 THR A 143 ASP A 148 1 O ALA A 147 N ASN A 86 SHEET 3 C 4 ARG A 166 VAL A 173 1 O PHE A 170 N ASP A 148 SHEET 4 C 4 VAL A 209 PRO A 215 1 O GLY A 214 N ALA A 171 SHEET 1 D 4 VAL A 240 LEU A 244 0 SHEET 2 D 4 VAL A 276 HIS A 280 1 O VAL A 279 N ILE A 242 SHEET 3 D 4 SER A 298 HIS A 301 1 O SER A 298 N CYS A 278 SHEET 4 D 4 LEU A 326 ILE A 328 1 O ALA A 327 N HIS A 301 LINK C LEU A 80 N MSE A 81 1555 1555 1.32 LINK C MSE A 81 N PRO A 82 1555 1555 1.34 LINK C ALA A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N SER A 94 1555 1555 1.33 LINK C LEU A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N THR A 108 1555 1555 1.33 LINK C GLU A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N ILE A 139 1555 1555 1.33 LINK C ASP A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N TYR A 150 1555 1555 1.32 LINK C PRO A 202 N AMSE A 203 1555 1555 1.32 LINK C PRO A 202 N BMSE A 203 1555 1555 1.33 LINK C AMSE A 203 N ASN A 204 1555 1555 1.33 LINK C BMSE A 203 N ASN A 204 1555 1555 1.33 LINK C THR A 230 N MSE A 231 1555 1555 1.33 LINK C MSE A 231 N LEU A 232 1555 1555 1.33 LINK C ASP A 237 N MSE A 238 1555 1555 1.33 LINK C MSE A 238 N PRO A 239 1555 1555 1.34 LINK C HIS A 280 N AMSE A 281 1555 1555 1.33 LINK C HIS A 280 N BMSE A 281 1555 1555 1.33 LINK C AMSE A 281 N THR A 282 1555 1555 1.33 LINK C BMSE A 281 N THR A 282 1555 1555 1.33 LINK C ASP A 340 N MSE A 341 1555 1555 1.34 LINK C MSE A 341 N PHE A 342 1555 1555 1.33 LINK C THR A 369 N MSE A 370 1555 1555 1.33 LINK C MSE A 370 N ALA A 371 1555 1555 1.33 LINK C HIS A 415 N MSE A 416 1555 1555 1.34 LINK C MSE A 416 N VAL A 417 1555 1555 1.32 LINK OE1 GLU A 304 CA CA A 472 1555 1555 2.32 LINK OD2 ASP A 331 CA CA A 471 1555 1555 2.35 LINK OD1 ASN A 336 CA CA A 472 1555 1555 2.26 LINK OD1 ASP A 338 CA CA A 472 1555 1555 2.55 LINK OD2 ASP A 338 CA CA A 472 1555 1555 2.82 LINK CA CA A 471 O HOH A 481 1555 1555 2.46 LINK CA CA A 471 O HOH A 596 1555 1555 2.30 LINK CA CA A 471 O HOH A 694 1555 1555 2.27 LINK CA CA A 472 O HOH A 604 1555 1555 2.40 LINK CA CA A 472 O HOH A 605 1555 1555 2.45 LINK CA CA A 472 O HOH A 606 1555 1555 2.41 CISPEP 1 ASN A 336 ASN A 337 0 10.92 CISPEP 2 GLN A 407 PRO A 408 0 -4.56 SITE 1 AC1 7 HIS A 88 HIS A 90 HIS A 243 ASP A 331 SITE 2 AC1 7 HOH A 481 HOH A 596 HOH A 694 SITE 1 AC2 6 GLU A 304 ASN A 336 ASP A 338 HOH A 604 SITE 2 AC2 6 HOH A 605 HOH A 606 SITE 1 AC3 4 HIS A 18 ILE A 67 ALA A 267 HOH A 773 SITE 1 AC4 8 PRO A 315 ALA A 317 LYS A 318 VAL A 355 SITE 2 AC4 8 SER A 356 HOH A 563 HOH A 672 HOH A 760 SITE 1 AC5 1 HOH A 776 CRYST1 77.902 77.902 143.754 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012837 0.007411 0.000000 0.00000 SCALE2 0.000000 0.014822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006956 0.00000