data_3LNQ # _entry.id 3LNQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LNQ pdb_00003lnq 10.2210/pdb3lnq/pdb NDB NA0441 ? ? RCSB RCSB057504 ? ? WWPDB D_1000057504 ? ? # _pdbx_database_status.entry_id 3LNQ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-02-02 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Takamura, Y.' 1 'Miyazono, K.' 2 'Nagata, K.' 3 'Saigo, K.' 4 'Kojima, T.' 5 'Tanokura, M.' 6 # _citation.id primary _citation.title 'Cooperative DNA-binding and sequence-recognition mechanism of aristaless and clawless' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 29 _citation.page_first 1613 _citation.page_last 1623 _citation.year 2010 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20389279 _citation.pdbx_database_id_DOI 10.1038/emboj.2010.53 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Miyazono, K.' 1 ? primary 'Zhi, Y.' 2 ? primary 'Takamura, Y.' 3 ? primary 'Nagata, K.' 4 ? primary 'Saigo, K.' 5 ? primary 'Kojima, T.' 6 ? primary 'Tanokura, M.' 7 ? # _cell.entry_id 3LNQ _cell.length_a 42.350 _cell.length_b 42.350 _cell.length_c 162.730 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LNQ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Homeobox protein aristaless' 7238.229 1 ? ? 'Homeobox, residues 87-144' ? 2 polymer syn "5'-D(*GP*GP*GP*TP*TP*TP*AP*AP*TP*TP*AP*GP*GP*G)-3'" 4390.862 1 ? ? ? ? 3 polymer syn "5'-D(*CP*CP*CP*TP*AP*AP*TP*TP*AP*AP*AP*CP*CP*C)-3'" 4168.745 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 water nat water 18.015 30 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DT)(DT)(DT)(DA)(DA)(DT)(DT)(DA)(DG)(DG)(DG)' GGGTTTAATTAGGG B ? 3 polydeoxyribonucleotide no no '(DC)(DC)(DC)(DT)(DA)(DA)(DT)(DT)(DA)(DA)(DA)(DC)(DC)(DC)' CCCTAATTAAACCC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 TYR n 1 3 ARG n 1 4 THR n 1 5 THR n 1 6 PHE n 1 7 THR n 1 8 SER n 1 9 PHE n 1 10 GLN n 1 11 LEU n 1 12 GLU n 1 13 GLU n 1 14 LEU n 1 15 GLU n 1 16 LYS n 1 17 ALA n 1 18 PHE n 1 19 SER n 1 20 ARG n 1 21 THR n 1 22 HIS n 1 23 TYR n 1 24 PRO n 1 25 ASP n 1 26 VAL n 1 27 PHE n 1 28 THR n 1 29 ARG n 1 30 GLU n 1 31 GLU n 1 32 LEU n 1 33 ALA n 1 34 MET n 1 35 LYS n 1 36 ILE n 1 37 GLY n 1 38 LEU n 1 39 THR n 1 40 GLU n 1 41 ALA n 1 42 ARG n 1 43 ILE n 1 44 GLN n 1 45 VAL n 1 46 TRP n 1 47 PHE n 1 48 GLN n 1 49 ASN n 1 50 ARG n 1 51 ARG n 1 52 ALA n 1 53 LYS n 1 54 TRP n 1 55 ARG n 1 56 LYS n 1 57 GLN n 1 58 GLU n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DT n 2 10 DT n 2 11 DA n 2 12 DG n 2 13 DG n 2 14 DG n 3 1 DC n 3 2 DC n 3 3 DC n 3 4 DT n 3 5 DA n 3 6 DA n 3 7 DT n 3 8 DT n 3 9 DA n 3 10 DA n 3 11 DA n 3 12 DC n 3 13 DC n 3 14 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'al, CG3935' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP AL_DROME Q06453 1 RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 87 ? 2 PDB 3LNQ 3LNQ 2 GGGTTTAATTAGGG 1 ? 3 PDB 3LNQ 3LNQ 3 CCCTAATTAAACCC 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LNQ A 1 ? 58 ? Q06453 87 ? 144 ? 87 144 2 2 3LNQ B 1 ? 14 ? 3LNQ 1 ? 14 ? 1 14 3 3 3LNQ C 1 ? 14 ? 3LNQ 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3LNQ _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 46.74 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, 0.2 M sodium acetate trihydrate, 26% PEG 4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 95 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A # _reflns.entry_id 3LNQ _reflns.d_resolution_high 2.250 _reflns.number_obs 7641 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 23.320 _reflns.percent_possible_obs 99.700 _reflns.B_iso_Wilson_estimate 54.978 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.25 2.31 6094 ? 551 0.695 3.6 ? ? ? ? ? 100.00 ? 1 2.31 2.37 7190 ? 529 0.592 4.9 ? ? ? ? ? 100.00 ? 2 2.37 2.44 7179 ? 513 0.523 5.8 ? ? ? ? ? 100.00 ? 3 2.44 2.52 7032 ? 512 0.424 6.9 ? ? ? ? ? 100.00 ? 4 2.52 2.60 6755 ? 480 0.313 9.5 ? ? ? ? ? 100.00 ? 5 2.60 2.69 6672 ? 482 0.242 12.0 ? ? ? ? ? 100.00 ? 6 2.69 2.79 6388 ? 464 0.188 15.4 ? ? ? ? ? 100.00 ? 7 2.79 2.90 6083 ? 443 0.147 19.3 ? ? ? ? ? 100.00 ? 8 2.90 3.03 5933 ? 438 0.122 22.7 ? ? ? ? ? 100.00 ? 9 3.03 3.18 5626 ? 415 0.071 31.4 ? ? ? ? ? 100.00 ? 10 3.18 3.35 5115 ? 385 0.063 35.2 ? ? ? ? ? 99.50 ? 11 3.35 3.56 5040 ? 384 0.066 38.6 ? ? ? ? ? 100.00 ? 12 3.56 3.80 4531 ? 353 0.055 41.8 ? ? ? ? ? 100.00 ? 13 3.80 4.11 4259 ? 329 0.053 44.0 ? ? ? ? ? 100.00 ? 14 4.11 4.50 3877 ? 312 0.049 44.0 ? ? ? ? ? 100.00 ? 15 4.50 5.03 3572 ? 286 0.045 44.4 ? ? ? ? ? 100.00 ? 16 5.03 5.81 3194 ? 257 0.046 45.5 ? ? ? ? ? 100.00 ? 17 5.81 7.12 2717 ? 227 0.045 42.5 ? ? ? ? ? 100.00 ? 18 7.12 10.06 2074 ? 183 0.036 46.1 ? ? ? ? ? 100.00 ? 19 10.06 ? 944 ? 98 0.024 43.1 ? ? ? ? ? 83.80 ? 20 # _refine.entry_id 3LNQ _refine.ls_d_res_high 2.250 _refine.ls_d_res_low 18.939 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.960 _refine.ls_number_reflns_obs 7641 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_obs 0.22797 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.22674 _refine.ls_R_factor_R_free 0.25105 _refine.ls_percent_reflns_R_free 4.600 _refine.ls_number_reflns_R_free 353 _refine.ls_number_reflns_R_work 7288 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 42.719 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.40 _refine.aniso_B[2][2] 0.40 _refine.aniso_B[3][3] -0.81 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.correlation_coeff_Fo_to_Fc 0.948 _refine.correlation_coeff_Fo_to_Fc_free 0.933 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.325 _refine.pdbx_overall_ESU_R_Free 0.224 _refine.overall_SU_ML 0.186 _refine.overall_SU_B 16.486 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 3A01' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 85.68 _refine.B_iso_min 23.19 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 511 _refine_hist.pdbx_number_atoms_nucleic_acid 568 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 30 _refine_hist.number_atoms_total 1113 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low 18.939 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.021 ? 1162 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.659 2.548 ? 1682 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.117 5.000 ? 57 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 31.147 21.613 ? 31 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.614 15.000 ? 99 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 26.593 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 181 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 699 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.600 1.500 ? 292 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.141 2.000 ? 469 'X-RAY DIFFRACTION' ? r_scbond_it 1.491 3.000 ? 870 'X-RAY DIFFRACTION' ? r_scangle_it 2.173 4.500 ? 1213 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.250 _refine_ls_shell.d_res_low 2.308 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.820 _refine_ls_shell.number_reflns_R_work 518 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.317 _refine_ls_shell.R_factor_R_free 0.426 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 31 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 549 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3LNQ _struct.title 'Structure of Aristaless homeodomain in complex with DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LNQ _struct_keywords.pdbx_keywords 'Gene Regulation/DNA' _struct_keywords.text 'HOMEODOMAIN, PROTEIN-DNA COMPLEX, Developmental protein, DNA-binding, Homeobox, Nucleus, Gene Regulation-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? THR A 21 ? THR A 93 THR A 107 1 ? 15 HELX_P HELX_P2 2 ASP A 25 ? GLY A 37 ? ASP A 111 GLY A 123 1 ? 13 HELX_P HELX_P3 3 THR A 39 ? GLN A 57 ? THR A 125 GLN A 143 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 14 N3 ? ? B DG 1 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 14 O2 ? ? B DG 1 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 14 N4 ? ? B DG 1 C DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 2 C DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 12 N3 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 12 O2 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 12 N4 ? ? B DG 3 C DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 4 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 4 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 4 C DA 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 6 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 6 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 6 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 6 C DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 7 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 7 C DT 8 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog17 hydrog ? ? B DA 8 N1 ? ? ? 1_555 C DT 7 N3 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 8 N6 ? ? ? 1_555 C DT 7 O4 ? ? B DA 8 C DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 6 N1 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 10 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DT 10 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 10 C DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 11 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 11 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 11 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 11 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 12 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 12 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 12 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 12 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 13 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DG 13 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DG 13 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 13 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DG 14 N1 ? ? ? 1_555 C DC 1 N3 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B DG 14 N2 ? ? ? 1_555 C DC 1 O2 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B DG 14 O6 ? ? ? 1_555 C DC 1 N4 ? ? B DG 14 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id ACT _struct_site.pdbx_auth_seq_id 1428 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE ACT B 1428' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 DG B 1 ? DG B 1 . ? 3_554 ? 2 AC1 3 DG B 13 ? DG B 13 . ? 1_555 ? 3 AC1 3 HOH F . ? HOH B 17 . ? 1_555 ? # _atom_sites.entry_id 3LNQ _atom_sites.fract_transf_matrix[1][1] 0.023613 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023613 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006145 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 87 87 ARG ARG A . n A 1 2 TYR 2 88 88 TYR TYR A . n A 1 3 ARG 3 89 89 ARG ARG A . n A 1 4 THR 4 90 90 THR THR A . n A 1 5 THR 5 91 91 THR THR A . n A 1 6 PHE 6 92 92 PHE PHE A . n A 1 7 THR 7 93 93 THR THR A . n A 1 8 SER 8 94 94 SER SER A . n A 1 9 PHE 9 95 95 PHE PHE A . n A 1 10 GLN 10 96 96 GLN GLN A . n A 1 11 LEU 11 97 97 LEU LEU A . n A 1 12 GLU 12 98 98 GLU GLU A . n A 1 13 GLU 13 99 99 GLU GLU A . n A 1 14 LEU 14 100 100 LEU LEU A . n A 1 15 GLU 15 101 101 GLU GLU A . n A 1 16 LYS 16 102 102 LYS LYS A . n A 1 17 ALA 17 103 103 ALA ALA A . n A 1 18 PHE 18 104 104 PHE PHE A . n A 1 19 SER 19 105 105 SER SER A . n A 1 20 ARG 20 106 106 ARG ARG A . n A 1 21 THR 21 107 107 THR THR A . n A 1 22 HIS 22 108 108 HIS HIS A . n A 1 23 TYR 23 109 109 TYR TYR A . n A 1 24 PRO 24 110 110 PRO PRO A . n A 1 25 ASP 25 111 111 ASP ASP A . n A 1 26 VAL 26 112 112 VAL VAL A . n A 1 27 PHE 27 113 113 PHE PHE A . n A 1 28 THR 28 114 114 THR THR A . n A 1 29 ARG 29 115 115 ARG ARG A . n A 1 30 GLU 30 116 116 GLU GLU A . n A 1 31 GLU 31 117 117 GLU GLU A . n A 1 32 LEU 32 118 118 LEU LEU A . n A 1 33 ALA 33 119 119 ALA ALA A . n A 1 34 MET 34 120 120 MET MET A . n A 1 35 LYS 35 121 121 LYS LYS A . n A 1 36 ILE 36 122 122 ILE ILE A . n A 1 37 GLY 37 123 123 GLY GLY A . n A 1 38 LEU 38 124 124 LEU LEU A . n A 1 39 THR 39 125 125 THR THR A . n A 1 40 GLU 40 126 126 GLU GLU A . n A 1 41 ALA 41 127 127 ALA ALA A . n A 1 42 ARG 42 128 128 ARG ARG A . n A 1 43 ILE 43 129 129 ILE ILE A . n A 1 44 GLN 44 130 130 GLN GLN A . n A 1 45 VAL 45 131 131 VAL VAL A . n A 1 46 TRP 46 132 132 TRP TRP A . n A 1 47 PHE 47 133 133 PHE PHE A . n A 1 48 GLN 48 134 134 GLN GLN A . n A 1 49 ASN 49 135 135 ASN ASN A . n A 1 50 ARG 50 136 136 ARG ARG A . n A 1 51 ARG 51 137 137 ARG ARG A . n A 1 52 ALA 52 138 138 ALA ALA A . n A 1 53 LYS 53 139 139 LYS LYS A . n A 1 54 TRP 54 140 140 TRP TRP A . n A 1 55 ARG 55 141 141 ARG ARG A . n A 1 56 LYS 56 142 142 LYS LYS A . n A 1 57 GLN 57 143 143 GLN GLN A . n A 1 58 GLU 58 144 144 GLU GLU A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DT 4 4 4 DT DT B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DT 6 6 6 DT DT B . n B 2 7 DA 7 7 7 DA DA B . n B 2 8 DA 8 8 8 DA DA B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DT 10 10 10 DT DT B . n B 2 11 DA 11 11 11 DA DA B . n B 2 12 DG 12 12 12 DG DG B . n B 2 13 DG 13 13 13 DG DG B . n B 2 14 DG 14 14 14 DG DG B . n C 3 1 DC 1 1 1 DC DC C . n C 3 2 DC 2 2 2 DC DC C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DT 4 4 4 DT DT C . n C 3 5 DA 5 5 5 DA DA C . n C 3 6 DA 6 6 6 DA DA C . n C 3 7 DT 7 7 7 DT DT C . n C 3 8 DT 8 8 8 DT DT C . n C 3 9 DA 9 9 9 DA DA C . n C 3 10 DA 10 10 10 DA DA C . n C 3 11 DA 11 11 11 DA DA C . n C 3 12 DC 12 12 12 DC DC C . n C 3 13 DC 13 13 13 DC DC C . n C 3 14 DC 14 14 14 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACT 1 1428 1428 ACT ACT B . E 5 HOH 1 3 3 HOH HOH A . E 5 HOH 2 4 4 HOH HOH A . E 5 HOH 3 5 5 HOH HOH A . E 5 HOH 4 6 6 HOH HOH A . E 5 HOH 5 7 7 HOH HOH A . E 5 HOH 6 8 8 HOH HOH A . E 5 HOH 7 10 10 HOH HOH A . E 5 HOH 8 11 11 HOH HOH A . E 5 HOH 9 13 13 HOH HOH A . E 5 HOH 10 14 14 HOH HOH A . E 5 HOH 11 16 16 HOH HOH A . E 5 HOH 12 17 17 HOH HOH A . E 5 HOH 13 20 20 HOH HOH A . E 5 HOH 14 21 21 HOH HOH A . E 5 HOH 15 23 23 HOH HOH A . E 5 HOH 16 24 24 HOH HOH A . E 5 HOH 17 30 30 HOH HOH A . F 5 HOH 1 15 15 HOH HOH B . F 5 HOH 2 16 16 HOH HOH B . F 5 HOH 3 17 17 HOH HOH B . F 5 HOH 4 18 18 HOH HOH B . F 5 HOH 5 19 19 HOH HOH B . F 5 HOH 6 20 20 HOH HOH B . F 5 HOH 7 22 22 HOH HOH B . F 5 HOH 8 25 25 HOH HOH B . F 5 HOH 9 26 26 HOH HOH B . F 5 HOH 10 27 27 HOH HOH B . F 5 HOH 11 28 28 HOH HOH B . F 5 HOH 12 29 29 HOH HOH B . G 5 HOH 1 15 15 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3210 ? 1 MORE -20 ? 1 'SSA (A^2)' 7930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-28 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -3.6293 12.1106 -7.2533 0.1097 0.1914 0.1715 -0.0657 -0.0151 -0.0869 2.4953 3.3878 2.1930 -2.0624 -1.0664 1.7829 -0.0861 0.3566 -0.2704 -0.4116 0.3325 -0.3616 0.2419 -0.0722 0.4825 'X-RAY DIFFRACTION' 2 ? refined -5.7070 12.2294 -7.6453 0.0672 0.1864 0.1517 -0.0361 0.0386 -0.0242 1.3534 2.0966 7.4771 -1.0677 -1.6101 2.4600 0.1519 0.1686 -0.3205 -0.3001 0.1291 -0.1577 -0.0702 -0.4007 0.2178 'X-RAY DIFFRACTION' 3 ? refined -16.7132 10.6073 -15.2476 0.0615 0.1684 0.2068 -0.0467 0.0475 -0.0343 4.6222 6.8163 2.7342 -2.3609 -0.1472 -1.2602 0.0963 -0.1317 0.0354 0.0588 -0.2679 0.5302 0.0791 -0.0616 -0.0322 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 B 1 B 14 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 C 1 C 14 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 87 A 144 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 REFMAC refmac_5.5.0102 24/04/2001 program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DT 6 ? ? "C1'" B DT 6 ? ? N1 B DT 6 ? ? 112.99 108.30 4.69 0.30 N 2 1 "O4'" B DA 11 ? ? "C1'" B DA 11 ? ? N9 B DA 11 ? ? 111.65 108.30 3.35 0.30 N 3 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.63 108.30 3.33 0.30 N 4 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.27 108.30 2.97 0.30 N 5 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 111.53 108.30 3.23 0.30 N 6 1 "C4'" C DC 3 ? ? "C3'" C DC 3 ? ? "C2'" C DC 3 ? ? 97.23 102.20 -4.97 0.70 N 7 1 "C3'" C DC 12 ? ? "O3'" C DC 12 ? ? P C DC 13 ? ? 127.78 119.70 8.08 1.20 Y 8 1 "O4'" C DC 13 ? ? "C1'" C DC 13 ? ? N1 C DC 13 ? ? 112.69 108.30 4.39 0.30 N 9 1 "O4'" C DC 14 ? ? "C1'" C DC 14 ? ? N1 C DC 14 ? ? 110.29 108.30 1.99 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 DA OP3 O N N 81 DA P P N N 82 DA OP1 O N N 83 DA OP2 O N N 84 DA "O5'" O N N 85 DA "C5'" C N N 86 DA "C4'" C N R 87 DA "O4'" O N N 88 DA "C3'" C N S 89 DA "O3'" O N N 90 DA "C2'" C N N 91 DA "C1'" C N R 92 DA N9 N Y N 93 DA C8 C Y N 94 DA N7 N Y N 95 DA C5 C Y N 96 DA C6 C Y N 97 DA N6 N N N 98 DA N1 N Y N 99 DA C2 C Y N 100 DA N3 N Y N 101 DA C4 C Y N 102 DA HOP3 H N N 103 DA HOP2 H N N 104 DA "H5'" H N N 105 DA "H5''" H N N 106 DA "H4'" H N N 107 DA "H3'" H N N 108 DA "HO3'" H N N 109 DA "H2'" H N N 110 DA "H2''" H N N 111 DA "H1'" H N N 112 DA H8 H N N 113 DA H61 H N N 114 DA H62 H N N 115 DA H2 H N N 116 DC OP3 O N N 117 DC P P N N 118 DC OP1 O N N 119 DC OP2 O N N 120 DC "O5'" O N N 121 DC "C5'" C N N 122 DC "C4'" C N R 123 DC "O4'" O N N 124 DC "C3'" C N S 125 DC "O3'" O N N 126 DC "C2'" C N N 127 DC "C1'" C N R 128 DC N1 N N N 129 DC C2 C N N 130 DC O2 O N N 131 DC N3 N N N 132 DC C4 C N N 133 DC N4 N N N 134 DC C5 C N N 135 DC C6 C N N 136 DC HOP3 H N N 137 DC HOP2 H N N 138 DC "H5'" H N N 139 DC "H5''" H N N 140 DC "H4'" H N N 141 DC "H3'" H N N 142 DC "HO3'" H N N 143 DC "H2'" H N N 144 DC "H2''" H N N 145 DC "H1'" H N N 146 DC H41 H N N 147 DC H42 H N N 148 DC H5 H N N 149 DC H6 H N N 150 DG OP3 O N N 151 DG P P N N 152 DG OP1 O N N 153 DG OP2 O N N 154 DG "O5'" O N N 155 DG "C5'" C N N 156 DG "C4'" C N R 157 DG "O4'" O N N 158 DG "C3'" C N S 159 DG "O3'" O N N 160 DG "C2'" C N N 161 DG "C1'" C N R 162 DG N9 N Y N 163 DG C8 C Y N 164 DG N7 N Y N 165 DG C5 C Y N 166 DG C6 C N N 167 DG O6 O N N 168 DG N1 N N N 169 DG C2 C N N 170 DG N2 N N N 171 DG N3 N N N 172 DG C4 C Y N 173 DG HOP3 H N N 174 DG HOP2 H N N 175 DG "H5'" H N N 176 DG "H5''" H N N 177 DG "H4'" H N N 178 DG "H3'" H N N 179 DG "HO3'" H N N 180 DG "H2'" H N N 181 DG "H2''" H N N 182 DG "H1'" H N N 183 DG H8 H N N 184 DG H1 H N N 185 DG H21 H N N 186 DG H22 H N N 187 DT OP3 O N N 188 DT P P N N 189 DT OP1 O N N 190 DT OP2 O N N 191 DT "O5'" O N N 192 DT "C5'" C N N 193 DT "C4'" C N R 194 DT "O4'" O N N 195 DT "C3'" C N S 196 DT "O3'" O N N 197 DT "C2'" C N N 198 DT "C1'" C N R 199 DT N1 N N N 200 DT C2 C N N 201 DT O2 O N N 202 DT N3 N N N 203 DT C4 C N N 204 DT O4 O N N 205 DT C5 C N N 206 DT C7 C N N 207 DT C6 C N N 208 DT HOP3 H N N 209 DT HOP2 H N N 210 DT "H5'" H N N 211 DT "H5''" H N N 212 DT "H4'" H N N 213 DT "H3'" H N N 214 DT "HO3'" H N N 215 DT "H2'" H N N 216 DT "H2''" H N N 217 DT "H1'" H N N 218 DT H3 H N N 219 DT H71 H N N 220 DT H72 H N N 221 DT H73 H N N 222 DT H6 H N N 223 GLN N N N N 224 GLN CA C N S 225 GLN C C N N 226 GLN O O N N 227 GLN CB C N N 228 GLN CG C N N 229 GLN CD C N N 230 GLN OE1 O N N 231 GLN NE2 N N N 232 GLN OXT O N N 233 GLN H H N N 234 GLN H2 H N N 235 GLN HA H N N 236 GLN HB2 H N N 237 GLN HB3 H N N 238 GLN HG2 H N N 239 GLN HG3 H N N 240 GLN HE21 H N N 241 GLN HE22 H N N 242 GLN HXT H N N 243 GLU N N N N 244 GLU CA C N S 245 GLU C C N N 246 GLU O O N N 247 GLU CB C N N 248 GLU CG C N N 249 GLU CD C N N 250 GLU OE1 O N N 251 GLU OE2 O N N 252 GLU OXT O N N 253 GLU H H N N 254 GLU H2 H N N 255 GLU HA H N N 256 GLU HB2 H N N 257 GLU HB3 H N N 258 GLU HG2 H N N 259 GLU HG3 H N N 260 GLU HE2 H N N 261 GLU HXT H N N 262 GLY N N N N 263 GLY CA C N N 264 GLY C C N N 265 GLY O O N N 266 GLY OXT O N N 267 GLY H H N N 268 GLY H2 H N N 269 GLY HA2 H N N 270 GLY HA3 H N N 271 GLY HXT H N N 272 HIS N N N N 273 HIS CA C N S 274 HIS C C N N 275 HIS O O N N 276 HIS CB C N N 277 HIS CG C Y N 278 HIS ND1 N Y N 279 HIS CD2 C Y N 280 HIS CE1 C Y N 281 HIS NE2 N Y N 282 HIS OXT O N N 283 HIS H H N N 284 HIS H2 H N N 285 HIS HA H N N 286 HIS HB2 H N N 287 HIS HB3 H N N 288 HIS HD1 H N N 289 HIS HD2 H N N 290 HIS HE1 H N N 291 HIS HE2 H N N 292 HIS HXT H N N 293 HOH O O N N 294 HOH H1 H N N 295 HOH H2 H N N 296 ILE N N N N 297 ILE CA C N S 298 ILE C C N N 299 ILE O O N N 300 ILE CB C N S 301 ILE CG1 C N N 302 ILE CG2 C N N 303 ILE CD1 C N N 304 ILE OXT O N N 305 ILE H H N N 306 ILE H2 H N N 307 ILE HA H N N 308 ILE HB H N N 309 ILE HG12 H N N 310 ILE HG13 H N N 311 ILE HG21 H N N 312 ILE HG22 H N N 313 ILE HG23 H N N 314 ILE HD11 H N N 315 ILE HD12 H N N 316 ILE HD13 H N N 317 ILE HXT H N N 318 LEU N N N N 319 LEU CA C N S 320 LEU C C N N 321 LEU O O N N 322 LEU CB C N N 323 LEU CG C N N 324 LEU CD1 C N N 325 LEU CD2 C N N 326 LEU OXT O N N 327 LEU H H N N 328 LEU H2 H N N 329 LEU HA H N N 330 LEU HB2 H N N 331 LEU HB3 H N N 332 LEU HG H N N 333 LEU HD11 H N N 334 LEU HD12 H N N 335 LEU HD13 H N N 336 LEU HD21 H N N 337 LEU HD22 H N N 338 LEU HD23 H N N 339 LEU HXT H N N 340 LYS N N N N 341 LYS CA C N S 342 LYS C C N N 343 LYS O O N N 344 LYS CB C N N 345 LYS CG C N N 346 LYS CD C N N 347 LYS CE C N N 348 LYS NZ N N N 349 LYS OXT O N N 350 LYS H H N N 351 LYS H2 H N N 352 LYS HA H N N 353 LYS HB2 H N N 354 LYS HB3 H N N 355 LYS HG2 H N N 356 LYS HG3 H N N 357 LYS HD2 H N N 358 LYS HD3 H N N 359 LYS HE2 H N N 360 LYS HE3 H N N 361 LYS HZ1 H N N 362 LYS HZ2 H N N 363 LYS HZ3 H N N 364 LYS HXT H N N 365 MET N N N N 366 MET CA C N S 367 MET C C N N 368 MET O O N N 369 MET CB C N N 370 MET CG C N N 371 MET SD S N N 372 MET CE C N N 373 MET OXT O N N 374 MET H H N N 375 MET H2 H N N 376 MET HA H N N 377 MET HB2 H N N 378 MET HB3 H N N 379 MET HG2 H N N 380 MET HG3 H N N 381 MET HE1 H N N 382 MET HE2 H N N 383 MET HE3 H N N 384 MET HXT H N N 385 PHE N N N N 386 PHE CA C N S 387 PHE C C N N 388 PHE O O N N 389 PHE CB C N N 390 PHE CG C Y N 391 PHE CD1 C Y N 392 PHE CD2 C Y N 393 PHE CE1 C Y N 394 PHE CE2 C Y N 395 PHE CZ C Y N 396 PHE OXT O N N 397 PHE H H N N 398 PHE H2 H N N 399 PHE HA H N N 400 PHE HB2 H N N 401 PHE HB3 H N N 402 PHE HD1 H N N 403 PHE HD2 H N N 404 PHE HE1 H N N 405 PHE HE2 H N N 406 PHE HZ H N N 407 PHE HXT H N N 408 PRO N N N N 409 PRO CA C N S 410 PRO C C N N 411 PRO O O N N 412 PRO CB C N N 413 PRO CG C N N 414 PRO CD C N N 415 PRO OXT O N N 416 PRO H H N N 417 PRO HA H N N 418 PRO HB2 H N N 419 PRO HB3 H N N 420 PRO HG2 H N N 421 PRO HG3 H N N 422 PRO HD2 H N N 423 PRO HD3 H N N 424 PRO HXT H N N 425 SER N N N N 426 SER CA C N S 427 SER C C N N 428 SER O O N N 429 SER CB C N N 430 SER OG O N N 431 SER OXT O N N 432 SER H H N N 433 SER H2 H N N 434 SER HA H N N 435 SER HB2 H N N 436 SER HB3 H N N 437 SER HG H N N 438 SER HXT H N N 439 THR N N N N 440 THR CA C N S 441 THR C C N N 442 THR O O N N 443 THR CB C N R 444 THR OG1 O N N 445 THR CG2 C N N 446 THR OXT O N N 447 THR H H N N 448 THR H2 H N N 449 THR HA H N N 450 THR HB H N N 451 THR HG1 H N N 452 THR HG21 H N N 453 THR HG22 H N N 454 THR HG23 H N N 455 THR HXT H N N 456 TRP N N N N 457 TRP CA C N S 458 TRP C C N N 459 TRP O O N N 460 TRP CB C N N 461 TRP CG C Y N 462 TRP CD1 C Y N 463 TRP CD2 C Y N 464 TRP NE1 N Y N 465 TRP CE2 C Y N 466 TRP CE3 C Y N 467 TRP CZ2 C Y N 468 TRP CZ3 C Y N 469 TRP CH2 C Y N 470 TRP OXT O N N 471 TRP H H N N 472 TRP H2 H N N 473 TRP HA H N N 474 TRP HB2 H N N 475 TRP HB3 H N N 476 TRP HD1 H N N 477 TRP HE1 H N N 478 TRP HE3 H N N 479 TRP HZ2 H N N 480 TRP HZ3 H N N 481 TRP HH2 H N N 482 TRP HXT H N N 483 TYR N N N N 484 TYR CA C N S 485 TYR C C N N 486 TYR O O N N 487 TYR CB C N N 488 TYR CG C Y N 489 TYR CD1 C Y N 490 TYR CD2 C Y N 491 TYR CE1 C Y N 492 TYR CE2 C Y N 493 TYR CZ C Y N 494 TYR OH O N N 495 TYR OXT O N N 496 TYR H H N N 497 TYR H2 H N N 498 TYR HA H N N 499 TYR HB2 H N N 500 TYR HB3 H N N 501 TYR HD1 H N N 502 TYR HD2 H N N 503 TYR HE1 H N N 504 TYR HE2 H N N 505 TYR HH H N N 506 TYR HXT H N N 507 VAL N N N N 508 VAL CA C N S 509 VAL C C N N 510 VAL O O N N 511 VAL CB C N N 512 VAL CG1 C N N 513 VAL CG2 C N N 514 VAL OXT O N N 515 VAL H H N N 516 VAL H2 H N N 517 VAL HA H N N 518 VAL HB H N N 519 VAL HG11 H N N 520 VAL HG12 H N N 521 VAL HG13 H N N 522 VAL HG21 H N N 523 VAL HG22 H N N 524 VAL HG23 H N N 525 VAL HXT H N N 526 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 DA OP3 P sing N N 76 DA OP3 HOP3 sing N N 77 DA P OP1 doub N N 78 DA P OP2 sing N N 79 DA P "O5'" sing N N 80 DA OP2 HOP2 sing N N 81 DA "O5'" "C5'" sing N N 82 DA "C5'" "C4'" sing N N 83 DA "C5'" "H5'" sing N N 84 DA "C5'" "H5''" sing N N 85 DA "C4'" "O4'" sing N N 86 DA "C4'" "C3'" sing N N 87 DA "C4'" "H4'" sing N N 88 DA "O4'" "C1'" sing N N 89 DA "C3'" "O3'" sing N N 90 DA "C3'" "C2'" sing N N 91 DA "C3'" "H3'" sing N N 92 DA "O3'" "HO3'" sing N N 93 DA "C2'" "C1'" sing N N 94 DA "C2'" "H2'" sing N N 95 DA "C2'" "H2''" sing N N 96 DA "C1'" N9 sing N N 97 DA "C1'" "H1'" sing N N 98 DA N9 C8 sing Y N 99 DA N9 C4 sing Y N 100 DA C8 N7 doub Y N 101 DA C8 H8 sing N N 102 DA N7 C5 sing Y N 103 DA C5 C6 sing Y N 104 DA C5 C4 doub Y N 105 DA C6 N6 sing N N 106 DA C6 N1 doub Y N 107 DA N6 H61 sing N N 108 DA N6 H62 sing N N 109 DA N1 C2 sing Y N 110 DA C2 N3 doub Y N 111 DA C2 H2 sing N N 112 DA N3 C4 sing Y N 113 DC OP3 P sing N N 114 DC OP3 HOP3 sing N N 115 DC P OP1 doub N N 116 DC P OP2 sing N N 117 DC P "O5'" sing N N 118 DC OP2 HOP2 sing N N 119 DC "O5'" "C5'" sing N N 120 DC "C5'" "C4'" sing N N 121 DC "C5'" "H5'" sing N N 122 DC "C5'" "H5''" sing N N 123 DC "C4'" "O4'" sing N N 124 DC "C4'" "C3'" sing N N 125 DC "C4'" "H4'" sing N N 126 DC "O4'" "C1'" sing N N 127 DC "C3'" "O3'" sing N N 128 DC "C3'" "C2'" sing N N 129 DC "C3'" "H3'" sing N N 130 DC "O3'" "HO3'" sing N N 131 DC "C2'" "C1'" sing N N 132 DC "C2'" "H2'" sing N N 133 DC "C2'" "H2''" sing N N 134 DC "C1'" N1 sing N N 135 DC "C1'" "H1'" sing N N 136 DC N1 C2 sing N N 137 DC N1 C6 sing N N 138 DC C2 O2 doub N N 139 DC C2 N3 sing N N 140 DC N3 C4 doub N N 141 DC C4 N4 sing N N 142 DC C4 C5 sing N N 143 DC N4 H41 sing N N 144 DC N4 H42 sing N N 145 DC C5 C6 doub N N 146 DC C5 H5 sing N N 147 DC C6 H6 sing N N 148 DG OP3 P sing N N 149 DG OP3 HOP3 sing N N 150 DG P OP1 doub N N 151 DG P OP2 sing N N 152 DG P "O5'" sing N N 153 DG OP2 HOP2 sing N N 154 DG "O5'" "C5'" sing N N 155 DG "C5'" "C4'" sing N N 156 DG "C5'" "H5'" sing N N 157 DG "C5'" "H5''" sing N N 158 DG "C4'" "O4'" sing N N 159 DG "C4'" "C3'" sing N N 160 DG "C4'" "H4'" sing N N 161 DG "O4'" "C1'" sing N N 162 DG "C3'" "O3'" sing N N 163 DG "C3'" "C2'" sing N N 164 DG "C3'" "H3'" sing N N 165 DG "O3'" "HO3'" sing N N 166 DG "C2'" "C1'" sing N N 167 DG "C2'" "H2'" sing N N 168 DG "C2'" "H2''" sing N N 169 DG "C1'" N9 sing N N 170 DG "C1'" "H1'" sing N N 171 DG N9 C8 sing Y N 172 DG N9 C4 sing Y N 173 DG C8 N7 doub Y N 174 DG C8 H8 sing N N 175 DG N7 C5 sing Y N 176 DG C5 C6 sing N N 177 DG C5 C4 doub Y N 178 DG C6 O6 doub N N 179 DG C6 N1 sing N N 180 DG N1 C2 sing N N 181 DG N1 H1 sing N N 182 DG C2 N2 sing N N 183 DG C2 N3 doub N N 184 DG N2 H21 sing N N 185 DG N2 H22 sing N N 186 DG N3 C4 sing N N 187 DT OP3 P sing N N 188 DT OP3 HOP3 sing N N 189 DT P OP1 doub N N 190 DT P OP2 sing N N 191 DT P "O5'" sing N N 192 DT OP2 HOP2 sing N N 193 DT "O5'" "C5'" sing N N 194 DT "C5'" "C4'" sing N N 195 DT "C5'" "H5'" sing N N 196 DT "C5'" "H5''" sing N N 197 DT "C4'" "O4'" sing N N 198 DT "C4'" "C3'" sing N N 199 DT "C4'" "H4'" sing N N 200 DT "O4'" "C1'" sing N N 201 DT "C3'" "O3'" sing N N 202 DT "C3'" "C2'" sing N N 203 DT "C3'" "H3'" sing N N 204 DT "O3'" "HO3'" sing N N 205 DT "C2'" "C1'" sing N N 206 DT "C2'" "H2'" sing N N 207 DT "C2'" "H2''" sing N N 208 DT "C1'" N1 sing N N 209 DT "C1'" "H1'" sing N N 210 DT N1 C2 sing N N 211 DT N1 C6 sing N N 212 DT C2 O2 doub N N 213 DT C2 N3 sing N N 214 DT N3 C4 sing N N 215 DT N3 H3 sing N N 216 DT C4 O4 doub N N 217 DT C4 C5 sing N N 218 DT C5 C7 sing N N 219 DT C5 C6 doub N N 220 DT C7 H71 sing N N 221 DT C7 H72 sing N N 222 DT C7 H73 sing N N 223 DT C6 H6 sing N N 224 GLN N CA sing N N 225 GLN N H sing N N 226 GLN N H2 sing N N 227 GLN CA C sing N N 228 GLN CA CB sing N N 229 GLN CA HA sing N N 230 GLN C O doub N N 231 GLN C OXT sing N N 232 GLN CB CG sing N N 233 GLN CB HB2 sing N N 234 GLN CB HB3 sing N N 235 GLN CG CD sing N N 236 GLN CG HG2 sing N N 237 GLN CG HG3 sing N N 238 GLN CD OE1 doub N N 239 GLN CD NE2 sing N N 240 GLN NE2 HE21 sing N N 241 GLN NE2 HE22 sing N N 242 GLN OXT HXT sing N N 243 GLU N CA sing N N 244 GLU N H sing N N 245 GLU N H2 sing N N 246 GLU CA C sing N N 247 GLU CA CB sing N N 248 GLU CA HA sing N N 249 GLU C O doub N N 250 GLU C OXT sing N N 251 GLU CB CG sing N N 252 GLU CB HB2 sing N N 253 GLU CB HB3 sing N N 254 GLU CG CD sing N N 255 GLU CG HG2 sing N N 256 GLU CG HG3 sing N N 257 GLU CD OE1 doub N N 258 GLU CD OE2 sing N N 259 GLU OE2 HE2 sing N N 260 GLU OXT HXT sing N N 261 GLY N CA sing N N 262 GLY N H sing N N 263 GLY N H2 sing N N 264 GLY CA C sing N N 265 GLY CA HA2 sing N N 266 GLY CA HA3 sing N N 267 GLY C O doub N N 268 GLY C OXT sing N N 269 GLY OXT HXT sing N N 270 HIS N CA sing N N 271 HIS N H sing N N 272 HIS N H2 sing N N 273 HIS CA C sing N N 274 HIS CA CB sing N N 275 HIS CA HA sing N N 276 HIS C O doub N N 277 HIS C OXT sing N N 278 HIS CB CG sing N N 279 HIS CB HB2 sing N N 280 HIS CB HB3 sing N N 281 HIS CG ND1 sing Y N 282 HIS CG CD2 doub Y N 283 HIS ND1 CE1 doub Y N 284 HIS ND1 HD1 sing N N 285 HIS CD2 NE2 sing Y N 286 HIS CD2 HD2 sing N N 287 HIS CE1 NE2 sing Y N 288 HIS CE1 HE1 sing N N 289 HIS NE2 HE2 sing N N 290 HIS OXT HXT sing N N 291 HOH O H1 sing N N 292 HOH O H2 sing N N 293 ILE N CA sing N N 294 ILE N H sing N N 295 ILE N H2 sing N N 296 ILE CA C sing N N 297 ILE CA CB sing N N 298 ILE CA HA sing N N 299 ILE C O doub N N 300 ILE C OXT sing N N 301 ILE CB CG1 sing N N 302 ILE CB CG2 sing N N 303 ILE CB HB sing N N 304 ILE CG1 CD1 sing N N 305 ILE CG1 HG12 sing N N 306 ILE CG1 HG13 sing N N 307 ILE CG2 HG21 sing N N 308 ILE CG2 HG22 sing N N 309 ILE CG2 HG23 sing N N 310 ILE CD1 HD11 sing N N 311 ILE CD1 HD12 sing N N 312 ILE CD1 HD13 sing N N 313 ILE OXT HXT sing N N 314 LEU N CA sing N N 315 LEU N H sing N N 316 LEU N H2 sing N N 317 LEU CA C sing N N 318 LEU CA CB sing N N 319 LEU CA HA sing N N 320 LEU C O doub N N 321 LEU C OXT sing N N 322 LEU CB CG sing N N 323 LEU CB HB2 sing N N 324 LEU CB HB3 sing N N 325 LEU CG CD1 sing N N 326 LEU CG CD2 sing N N 327 LEU CG HG sing N N 328 LEU CD1 HD11 sing N N 329 LEU CD1 HD12 sing N N 330 LEU CD1 HD13 sing N N 331 LEU CD2 HD21 sing N N 332 LEU CD2 HD22 sing N N 333 LEU CD2 HD23 sing N N 334 LEU OXT HXT sing N N 335 LYS N CA sing N N 336 LYS N H sing N N 337 LYS N H2 sing N N 338 LYS CA C sing N N 339 LYS CA CB sing N N 340 LYS CA HA sing N N 341 LYS C O doub N N 342 LYS C OXT sing N N 343 LYS CB CG sing N N 344 LYS CB HB2 sing N N 345 LYS CB HB3 sing N N 346 LYS CG CD sing N N 347 LYS CG HG2 sing N N 348 LYS CG HG3 sing N N 349 LYS CD CE sing N N 350 LYS CD HD2 sing N N 351 LYS CD HD3 sing N N 352 LYS CE NZ sing N N 353 LYS CE HE2 sing N N 354 LYS CE HE3 sing N N 355 LYS NZ HZ1 sing N N 356 LYS NZ HZ2 sing N N 357 LYS NZ HZ3 sing N N 358 LYS OXT HXT sing N N 359 MET N CA sing N N 360 MET N H sing N N 361 MET N H2 sing N N 362 MET CA C sing N N 363 MET CA CB sing N N 364 MET CA HA sing N N 365 MET C O doub N N 366 MET C OXT sing N N 367 MET CB CG sing N N 368 MET CB HB2 sing N N 369 MET CB HB3 sing N N 370 MET CG SD sing N N 371 MET CG HG2 sing N N 372 MET CG HG3 sing N N 373 MET SD CE sing N N 374 MET CE HE1 sing N N 375 MET CE HE2 sing N N 376 MET CE HE3 sing N N 377 MET OXT HXT sing N N 378 PHE N CA sing N N 379 PHE N H sing N N 380 PHE N H2 sing N N 381 PHE CA C sing N N 382 PHE CA CB sing N N 383 PHE CA HA sing N N 384 PHE C O doub N N 385 PHE C OXT sing N N 386 PHE CB CG sing N N 387 PHE CB HB2 sing N N 388 PHE CB HB3 sing N N 389 PHE CG CD1 doub Y N 390 PHE CG CD2 sing Y N 391 PHE CD1 CE1 sing Y N 392 PHE CD1 HD1 sing N N 393 PHE CD2 CE2 doub Y N 394 PHE CD2 HD2 sing N N 395 PHE CE1 CZ doub Y N 396 PHE CE1 HE1 sing N N 397 PHE CE2 CZ sing Y N 398 PHE CE2 HE2 sing N N 399 PHE CZ HZ sing N N 400 PHE OXT HXT sing N N 401 PRO N CA sing N N 402 PRO N CD sing N N 403 PRO N H sing N N 404 PRO CA C sing N N 405 PRO CA CB sing N N 406 PRO CA HA sing N N 407 PRO C O doub N N 408 PRO C OXT sing N N 409 PRO CB CG sing N N 410 PRO CB HB2 sing N N 411 PRO CB HB3 sing N N 412 PRO CG CD sing N N 413 PRO CG HG2 sing N N 414 PRO CG HG3 sing N N 415 PRO CD HD2 sing N N 416 PRO CD HD3 sing N N 417 PRO OXT HXT sing N N 418 SER N CA sing N N 419 SER N H sing N N 420 SER N H2 sing N N 421 SER CA C sing N N 422 SER CA CB sing N N 423 SER CA HA sing N N 424 SER C O doub N N 425 SER C OXT sing N N 426 SER CB OG sing N N 427 SER CB HB2 sing N N 428 SER CB HB3 sing N N 429 SER OG HG sing N N 430 SER OXT HXT sing N N 431 THR N CA sing N N 432 THR N H sing N N 433 THR N H2 sing N N 434 THR CA C sing N N 435 THR CA CB sing N N 436 THR CA HA sing N N 437 THR C O doub N N 438 THR C OXT sing N N 439 THR CB OG1 sing N N 440 THR CB CG2 sing N N 441 THR CB HB sing N N 442 THR OG1 HG1 sing N N 443 THR CG2 HG21 sing N N 444 THR CG2 HG22 sing N N 445 THR CG2 HG23 sing N N 446 THR OXT HXT sing N N 447 TRP N CA sing N N 448 TRP N H sing N N 449 TRP N H2 sing N N 450 TRP CA C sing N N 451 TRP CA CB sing N N 452 TRP CA HA sing N N 453 TRP C O doub N N 454 TRP C OXT sing N N 455 TRP CB CG sing N N 456 TRP CB HB2 sing N N 457 TRP CB HB3 sing N N 458 TRP CG CD1 doub Y N 459 TRP CG CD2 sing Y N 460 TRP CD1 NE1 sing Y N 461 TRP CD1 HD1 sing N N 462 TRP CD2 CE2 doub Y N 463 TRP CD2 CE3 sing Y N 464 TRP NE1 CE2 sing Y N 465 TRP NE1 HE1 sing N N 466 TRP CE2 CZ2 sing Y N 467 TRP CE3 CZ3 doub Y N 468 TRP CE3 HE3 sing N N 469 TRP CZ2 CH2 doub Y N 470 TRP CZ2 HZ2 sing N N 471 TRP CZ3 CH2 sing Y N 472 TRP CZ3 HZ3 sing N N 473 TRP CH2 HH2 sing N N 474 TRP OXT HXT sing N N 475 TYR N CA sing N N 476 TYR N H sing N N 477 TYR N H2 sing N N 478 TYR CA C sing N N 479 TYR CA CB sing N N 480 TYR CA HA sing N N 481 TYR C O doub N N 482 TYR C OXT sing N N 483 TYR CB CG sing N N 484 TYR CB HB2 sing N N 485 TYR CB HB3 sing N N 486 TYR CG CD1 doub Y N 487 TYR CG CD2 sing Y N 488 TYR CD1 CE1 sing Y N 489 TYR CD1 HD1 sing N N 490 TYR CD2 CE2 doub Y N 491 TYR CD2 HD2 sing N N 492 TYR CE1 CZ doub Y N 493 TYR CE1 HE1 sing N N 494 TYR CE2 CZ sing Y N 495 TYR CE2 HE2 sing N N 496 TYR CZ OH sing N N 497 TYR OH HH sing N N 498 TYR OXT HXT sing N N 499 VAL N CA sing N N 500 VAL N H sing N N 501 VAL N H2 sing N N 502 VAL CA C sing N N 503 VAL CA CB sing N N 504 VAL CA HA sing N N 505 VAL C O doub N N 506 VAL C OXT sing N N 507 VAL CB CG1 sing N N 508 VAL CB CG2 sing N N 509 VAL CB HB sing N N 510 VAL CG1 HG11 sing N N 511 VAL CG1 HG12 sing N N 512 VAL CG1 HG13 sing N N 513 VAL CG2 HG21 sing N N 514 VAL CG2 HG22 sing N N 515 VAL CG2 HG23 sing N N 516 VAL OXT HXT sing N N 517 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3LNQ 'double helix' 3LNQ 'a-form double helix' 3LNQ 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 14 1_555 -0.491 -0.117 0.277 2.137 -12.637 3.262 1 B_DG1:DC14_C B 1 ? C 14 ? 19 1 1 B DG 2 1_555 C DC 13 1_555 -0.242 -0.039 0.139 2.874 -10.360 2.510 2 B_DG2:DC13_C B 2 ? C 13 ? 19 1 1 B DG 3 1_555 C DC 12 1_555 -0.164 -0.168 0.078 5.075 -12.766 -1.111 3 B_DG3:DC12_C B 3 ? C 12 ? 19 1 1 B DT 4 1_555 C DA 11 1_555 -0.251 -0.078 0.093 2.139 -17.109 1.874 4 B_DT4:DA11_C B 4 ? C 11 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 -0.344 0.015 -0.039 -0.658 -14.247 4.779 5 B_DT5:DA10_C B 5 ? C 10 ? 20 1 1 B DT 6 1_555 C DA 9 1_555 -0.029 -0.002 -0.070 2.443 -8.283 9.387 6 B_DT6:DA9_C B 6 ? C 9 ? 20 1 1 B DA 7 1_555 C DT 8 1_555 -0.152 0.025 -0.017 -0.199 -17.177 9.439 7 B_DA7:DT8_C B 7 ? C 8 ? ? 1 1 B DA 8 1_555 C DT 7 1_555 0.000 -0.124 0.244 -1.634 -17.131 4.959 8 B_DA8:DT7_C B 8 ? C 7 ? 20 1 1 B DT 9 1_555 C DA 6 1_555 -0.242 -0.066 0.075 -2.885 -13.354 0.285 9 B_DT9:DA6_C B 9 ? C 6 ? 20 1 1 B DT 10 1_555 C DA 5 1_555 0.109 -0.108 -0.171 -2.223 -13.723 1.114 10 B_DT10:DA5_C B 10 ? C 5 ? 20 1 1 B DA 11 1_555 C DT 4 1_555 0.293 -0.246 -0.104 6.396 -15.040 0.663 11 B_DA11:DT4_C B 11 ? C 4 ? 20 1 1 B DG 12 1_555 C DC 3 1_555 0.033 -0.126 0.255 -0.240 -18.173 0.369 12 B_DG12:DC3_C B 12 ? C 3 ? 19 1 1 B DG 13 1_555 C DC 2 1_555 -0.292 -0.166 0.130 -2.321 -16.130 2.430 13 B_DG13:DC2_C B 13 ? C 2 ? 19 1 1 B DG 14 1_555 C DC 1 1_555 -0.158 -0.392 0.386 -0.032 -12.163 -3.076 14 B_DG14:DC1_C B 14 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 14 1_555 B DG 2 1_555 C DC 13 1_555 0.178 0.861 3.167 -0.876 2.504 39.004 0.994 -0.368 3.209 3.745 1.310 39.091 1 BB_DG1DG2:DC13DC14_CC B 1 ? C 14 ? B 2 ? C 13 ? 1 B DG 2 1_555 C DC 13 1_555 B DG 3 1_555 C DC 12 1_555 -0.955 0.432 3.288 -4.836 3.069 33.434 0.232 0.836 3.414 5.287 8.330 33.908 2 BB_DG2DG3:DC12DC13_CC B 2 ? C 13 ? B 3 ? C 12 ? 1 B DG 3 1_555 C DC 12 1_555 B DT 4 1_555 C DA 11 1_555 0.270 -0.416 3.276 0.198 1.855 35.983 -0.936 -0.409 3.252 3.000 -0.320 36.029 3 BB_DG3DT4:DA11DC12_CC B 3 ? C 12 ? B 4 ? C 11 ? 1 B DT 4 1_555 C DA 11 1_555 B DT 5 1_555 C DA 10 1_555 0.605 -0.060 3.227 2.450 -0.824 38.729 0.009 -0.614 3.259 -1.241 -3.690 38.812 4 BB_DT4DT5:DA10DA11_CC B 4 ? C 11 ? B 5 ? C 10 ? 1 B DT 5 1_555 C DA 10 1_555 B DT 6 1_555 C DA 9 1_555 1.299 0.417 3.225 3.842 1.737 33.757 0.433 -1.601 3.365 2.976 -6.585 34.012 5 BB_DT5DT6:DA9DA10_CC B 5 ? C 10 ? B 6 ? C 9 ? 1 B DT 6 1_555 C DA 9 1_555 B DA 7 1_555 C DT 8 1_555 -1.263 1.146 3.304 -3.207 2.753 42.419 1.289 1.403 3.450 3.793 4.419 42.619 6 BB_DT6DA7:DT8DA9_CC B 6 ? C 9 ? B 7 ? C 8 ? 1 B DA 7 1_555 C DT 8 1_555 B DA 8 1_555 C DT 7 1_555 0.154 -0.368 3.209 -1.755 3.023 33.288 -1.126 -0.549 3.153 5.259 3.054 33.466 7 BB_DA7DA8:DT7DT8_CC B 7 ? C 8 ? B 8 ? C 7 ? 1 B DA 8 1_555 C DT 7 1_555 B DT 9 1_555 C DA 6 1_555 -0.506 -0.786 3.235 0.691 -0.519 30.900 -1.376 1.082 3.236 -0.974 -1.296 30.912 8 BB_DA8DT9:DA6DT7_CC B 8 ? C 7 ? B 9 ? C 6 ? 1 B DT 9 1_555 C DA 6 1_555 B DT 10 1_555 C DA 5 1_555 -0.210 -0.441 3.135 1.759 2.992 35.060 -1.151 0.596 3.075 4.952 -2.911 35.226 9 BB_DT9DT10:DA5DA6_CC B 9 ? C 6 ? B 10 ? C 5 ? 1 B DT 10 1_555 C DA 5 1_555 B DA 11 1_555 C DT 4 1_555 0.453 0.707 3.223 -2.308 7.638 34.872 0.044 -1.073 3.264 12.543 3.789 35.745 10 BB_DT10DA11:DT4DA5_CC B 10 ? C 5 ? B 11 ? C 4 ? 1 B DA 11 1_555 C DT 4 1_555 B DG 12 1_555 C DC 3 1_555 0.116 -0.920 3.364 -7.270 5.738 33.576 -2.415 -1.306 3.079 9.705 12.296 34.794 11 BB_DA11DG12:DC3DT4_CC B 11 ? C 4 ? B 12 ? C 3 ? 1 B DG 12 1_555 C DC 3 1_555 B DG 13 1_555 C DC 2 1_555 -1.340 -1.765 3.141 -5.185 9.661 25.606 -5.771 1.661 2.538 20.634 11.074 27.818 12 BB_DG12DG13:DC2DC3_CC B 12 ? C 3 ? B 13 ? C 2 ? 1 B DG 13 1_555 C DC 2 1_555 B DG 14 1_555 C DC 1 1_555 -0.195 -1.200 3.247 -0.403 8.335 33.734 -3.224 0.269 2.880 14.096 0.681 34.722 13 BB_DG13DG14:DC1DC2_CC B 13 ? C 2 ? B 14 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ACETATE ION' ACT 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3A01 _pdbx_initial_refinement_model.details 'PDB ENTRY 3A01' #