data_3LNY # _entry.id 3LNY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3LNY pdb_00003lny 10.2210/pdb3lny/pdb RCSB RCSB057512 ? ? WWPDB D_1000057512 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-03-23 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2016-09-28 4 'Structure model' 1 3 2017-11-01 5 'Structure model' 1 4 2024-02-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 3LNY _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-02-03 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id GO.102606 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, J.' 1 'Chang, A.' 2 'Ke, H.' 3 'Phillips Jr., G.N.' 4 'Lee, A.L.' 5 'Center for Eukaryotic Structural Genomics (CESG)' 6 # _citation.id primary _citation.title ;Crystallographic and nuclear magnetic resonance evaluation of the impact of peptide binding to the second PDZ domain of protein tyrosine phosphatase 1E. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 49 _citation.page_first 9280 _citation.page_last 9291 _citation.year 2010 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20839809 _citation.pdbx_database_id_DOI 10.1021/bi101131f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, J.' 1 ? primary 'Sapienza, P.J.' 2 ? primary 'Ke, H.' 3 ? primary 'Chang, A.' 4 ? primary 'Hengel, S.R.' 5 ? primary 'Wang, H.' 6 ? primary 'Phillips, G.N.' 7 ? primary 'Lee, A.L.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Tyrosine-protein phosphatase non-receptor type 13' 10020.252 1 ? ? 'PDZ2 domain' ? 2 polymer man 'Rap guanine nucleotide exchange factor 6' 631.675 1 ? ? 'C-terminal residues 1596-1601' ? 3 non-polymer syn 'THIOCYANATE ION' 58.082 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 238 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;Protein-tyrosine phosphatase 1E, PTP-E1, hPTPE1, PTP-BAS, Protein-tyrosine phosphatase PTPL1, Fas-associated protein-tyrosine phosphatase 1, FAP-1 ; 2 'PDZ domain-containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN TGQVVHLLLEKGQSPT ; ;PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN TGQVVHLLLEKGQSPT ; A GO.102606 2 'polypeptide(L)' no no EQVSAV EQVSAV B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'THIOCYANATE ION' SCN 4 'SULFATE ION' SO4 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 LYS n 1 3 PRO n 1 4 GLY n 1 5 ASP n 1 6 ILE n 1 7 PHE n 1 8 GLU n 1 9 VAL n 1 10 GLU n 1 11 LEU n 1 12 ALA n 1 13 LYS n 1 14 ASN n 1 15 ASP n 1 16 ASN n 1 17 SER n 1 18 LEU n 1 19 GLY n 1 20 ILE n 1 21 SER n 1 22 VAL n 1 23 THR n 1 24 GLY n 1 25 GLY n 1 26 VAL n 1 27 ASN n 1 28 THR n 1 29 SER n 1 30 VAL n 1 31 ARG n 1 32 HIS n 1 33 GLY n 1 34 GLY n 1 35 ILE n 1 36 TYR n 1 37 VAL n 1 38 LYS n 1 39 ALA n 1 40 VAL n 1 41 ILE n 1 42 PRO n 1 43 GLN n 1 44 GLY n 1 45 ALA n 1 46 ALA n 1 47 GLU n 1 48 SER n 1 49 ASP n 1 50 GLY n 1 51 ARG n 1 52 ILE n 1 53 HIS n 1 54 LYS n 1 55 GLY n 1 56 ASP n 1 57 ARG n 1 58 VAL n 1 59 LEU n 1 60 ALA n 1 61 VAL n 1 62 ASN n 1 63 GLY n 1 64 VAL n 1 65 SER n 1 66 LEU n 1 67 GLU n 1 68 GLY n 1 69 ALA n 1 70 THR n 1 71 HIS n 1 72 LYS n 1 73 GLN n 1 74 ALA n 1 75 VAL n 1 76 GLU n 1 77 THR n 1 78 LEU n 1 79 ARG n 1 80 ASN n 1 81 THR n 1 82 GLY n 1 83 GLN n 1 84 VAL n 1 85 VAL n 1 86 HIS n 1 87 LEU n 1 88 LEU n 1 89 LEU n 1 90 GLU n 1 91 LYS n 1 92 GLY n 1 93 GLN n 1 94 SER n 1 95 PRO n 1 96 THR n 2 1 GLU n 2 2 GLN n 2 3 VAL n 2 4 SER n 2 5 ALA n 2 6 VAL n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'PTPN13, PNP1, PTP1E, PTPL1' ? ? ? ? 'NdeI BamHI restriction sites' ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? plasmid ? ? ? pET21a ? ? 2 1 sample ? ? ? human ? 'RAPGEF6, PDZGEF2' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SCN non-polymer . 'THIOCYANATE ION' ? 'C N S -1' 58.082 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 PRO 3 3 3 PRO PRO A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 THR 28 28 28 THR THR A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ILE 35 35 35 ILE ILE A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ALA 39 39 39 ALA ALA A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 SER 65 65 65 SER SER A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 THR 70 70 70 THR THR A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 GLU 90 90 90 GLU GLU A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 PRO 95 95 ? ? ? A . n A 1 96 THR 96 96 ? ? ? A . n B 2 1 GLU 1 3 3 GLU GLU B . n B 2 2 GLN 2 4 4 GLN GLN B . n B 2 3 VAL 3 5 5 VAL VAL B . n B 2 4 SER 4 6 6 SER SER B . n B 2 5 ALA 5 7 7 ALA ALA B . n B 2 6 VAL 6 8 8 VAL VAL B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SCN 1 97 97 SCN SCN A . D 4 SO4 1 98 98 SO4 SO4 A . E 4 SO4 1 99 99 SO4 SO4 A . F 5 HOH 1 100 100 HOH HOH A . F 5 HOH 2 101 101 HOH HOH A . F 5 HOH 3 102 102 HOH HOH A . F 5 HOH 4 103 103 HOH HOH A . F 5 HOH 5 104 104 HOH HOH A . F 5 HOH 6 105 105 HOH HOH A . F 5 HOH 7 106 106 HOH HOH A . F 5 HOH 8 107 107 HOH HOH A . F 5 HOH 9 108 108 HOH HOH A . F 5 HOH 10 109 109 HOH HOH A . F 5 HOH 11 110 110 HOH HOH A . F 5 HOH 12 111 111 HOH HOH A . F 5 HOH 13 112 112 HOH HOH A . F 5 HOH 14 113 113 HOH HOH A . F 5 HOH 15 114 114 HOH HOH A . F 5 HOH 16 115 115 HOH HOH A . F 5 HOH 17 116 116 HOH HOH A . F 5 HOH 18 117 117 HOH HOH A . F 5 HOH 19 118 118 HOH HOH A . F 5 HOH 20 119 119 HOH HOH A . F 5 HOH 21 120 120 HOH HOH A . F 5 HOH 22 121 121 HOH HOH A . F 5 HOH 23 122 122 HOH HOH A . F 5 HOH 24 123 123 HOH HOH A . F 5 HOH 25 124 124 HOH HOH A . F 5 HOH 26 125 125 HOH HOH A . F 5 HOH 27 126 126 HOH HOH A . F 5 HOH 28 127 127 HOH HOH A . F 5 HOH 29 128 128 HOH HOH A . F 5 HOH 30 129 129 HOH HOH A . F 5 HOH 31 130 130 HOH HOH A . F 5 HOH 32 131 131 HOH HOH A . F 5 HOH 33 132 132 HOH HOH A . F 5 HOH 34 133 133 HOH HOH A . F 5 HOH 35 134 134 HOH HOH A . F 5 HOH 36 135 135 HOH HOH A . F 5 HOH 37 136 136 HOH HOH A . F 5 HOH 38 137 137 HOH HOH A . F 5 HOH 39 138 138 HOH HOH A . F 5 HOH 40 139 139 HOH HOH A . F 5 HOH 41 140 140 HOH HOH A . F 5 HOH 42 141 141 HOH HOH A . F 5 HOH 43 142 142 HOH HOH A . F 5 HOH 44 143 143 HOH HOH A . F 5 HOH 45 144 144 HOH HOH A . F 5 HOH 46 145 145 HOH HOH A . F 5 HOH 47 146 146 HOH HOH A . F 5 HOH 48 147 147 HOH HOH A . F 5 HOH 49 148 148 HOH HOH A . F 5 HOH 50 149 149 HOH HOH A . F 5 HOH 51 150 150 HOH HOH A . F 5 HOH 52 151 151 HOH HOH A . F 5 HOH 53 152 152 HOH HOH A . F 5 HOH 54 153 153 HOH HOH A . F 5 HOH 55 154 154 HOH HOH A . F 5 HOH 56 155 155 HOH HOH A . F 5 HOH 57 156 156 HOH HOH A . F 5 HOH 58 157 157 HOH HOH A . F 5 HOH 59 158 158 HOH HOH A . F 5 HOH 60 159 159 HOH HOH A . F 5 HOH 61 160 160 HOH HOH A . F 5 HOH 62 161 161 HOH HOH A . F 5 HOH 63 162 162 HOH HOH A . F 5 HOH 64 163 163 HOH HOH A . F 5 HOH 65 164 164 HOH HOH A . F 5 HOH 66 165 165 HOH HOH A . F 5 HOH 67 166 166 HOH HOH A . F 5 HOH 68 167 167 HOH HOH A . F 5 HOH 69 168 168 HOH HOH A . F 5 HOH 70 169 169 HOH HOH A . F 5 HOH 71 170 170 HOH HOH A . F 5 HOH 72 171 171 HOH HOH A . F 5 HOH 73 172 172 HOH HOH A . F 5 HOH 74 173 173 HOH HOH A . F 5 HOH 75 174 174 HOH HOH A . F 5 HOH 76 175 175 HOH HOH A . F 5 HOH 77 176 176 HOH HOH A . F 5 HOH 78 177 177 HOH HOH A . F 5 HOH 79 178 178 HOH HOH A . F 5 HOH 80 179 179 HOH HOH A . F 5 HOH 81 180 180 HOH HOH A . F 5 HOH 82 181 181 HOH HOH A . F 5 HOH 83 182 182 HOH HOH A . F 5 HOH 84 183 183 HOH HOH A . F 5 HOH 85 184 184 HOH HOH A . F 5 HOH 86 185 185 HOH HOH A . F 5 HOH 87 186 186 HOH HOH A . F 5 HOH 88 187 187 HOH HOH A . F 5 HOH 89 188 188 HOH HOH A . F 5 HOH 90 189 189 HOH HOH A . F 5 HOH 91 190 190 HOH HOH A . F 5 HOH 92 191 191 HOH HOH A . F 5 HOH 93 192 192 HOH HOH A . F 5 HOH 94 193 193 HOH HOH A . F 5 HOH 95 194 194 HOH HOH A . F 5 HOH 96 195 195 HOH HOH A . F 5 HOH 97 196 196 HOH HOH A . F 5 HOH 98 197 197 HOH HOH A . F 5 HOH 99 198 198 HOH HOH A . F 5 HOH 100 199 199 HOH HOH A . F 5 HOH 101 200 200 HOH HOH A . F 5 HOH 102 201 201 HOH HOH A . F 5 HOH 103 202 202 HOH HOH A . F 5 HOH 104 203 203 HOH HOH A . F 5 HOH 105 204 204 HOH HOH A . F 5 HOH 106 205 205 HOH HOH A . F 5 HOH 107 206 206 HOH HOH A . F 5 HOH 108 207 207 HOH HOH A . F 5 HOH 109 208 208 HOH HOH A . F 5 HOH 110 209 209 HOH HOH A . F 5 HOH 111 210 210 HOH HOH A . F 5 HOH 112 211 211 HOH HOH A . F 5 HOH 113 212 212 HOH HOH A . F 5 HOH 114 213 213 HOH HOH A . F 5 HOH 115 214 214 HOH HOH A . F 5 HOH 116 215 215 HOH HOH A . F 5 HOH 117 216 216 HOH HOH A . F 5 HOH 118 217 217 HOH HOH A . F 5 HOH 119 218 218 HOH HOH A . F 5 HOH 120 219 219 HOH HOH A . F 5 HOH 121 220 220 HOH HOH A . F 5 HOH 122 221 221 HOH HOH A . F 5 HOH 123 222 222 HOH HOH A . F 5 HOH 124 223 223 HOH HOH A . F 5 HOH 125 224 224 HOH HOH A . F 5 HOH 126 225 225 HOH HOH A . F 5 HOH 127 226 226 HOH HOH A . F 5 HOH 128 227 227 HOH HOH A . F 5 HOH 129 228 228 HOH HOH A . F 5 HOH 130 229 229 HOH HOH A . F 5 HOH 131 230 230 HOH HOH A . F 5 HOH 132 231 231 HOH HOH A . F 5 HOH 133 232 232 HOH HOH A . F 5 HOH 134 233 233 HOH HOH A . F 5 HOH 135 234 234 HOH HOH A . F 5 HOH 136 235 235 HOH HOH A . F 5 HOH 137 236 236 HOH HOH A . F 5 HOH 138 237 237 HOH HOH A . F 5 HOH 139 238 238 HOH HOH A . F 5 HOH 140 239 239 HOH HOH A . F 5 HOH 141 240 240 HOH HOH A . F 5 HOH 142 241 241 HOH HOH A . F 5 HOH 143 242 242 HOH HOH A . F 5 HOH 144 243 243 HOH HOH A . F 5 HOH 145 244 244 HOH HOH A . F 5 HOH 146 245 245 HOH HOH A . F 5 HOH 147 246 246 HOH HOH A . F 5 HOH 148 247 247 HOH HOH A . F 5 HOH 149 248 248 HOH HOH A . F 5 HOH 150 249 249 HOH HOH A . F 5 HOH 151 250 250 HOH HOH A . F 5 HOH 152 251 251 HOH HOH A . F 5 HOH 153 252 252 HOH HOH A . F 5 HOH 154 253 253 HOH HOH A . F 5 HOH 155 254 254 HOH HOH A . F 5 HOH 156 255 255 HOH HOH A . F 5 HOH 157 256 256 HOH HOH A . F 5 HOH 158 257 257 HOH HOH A . F 5 HOH 159 258 258 HOH HOH A . F 5 HOH 160 259 259 HOH HOH A . F 5 HOH 161 260 260 HOH HOH A . F 5 HOH 162 261 261 HOH HOH A . F 5 HOH 163 262 262 HOH HOH A . F 5 HOH 164 263 263 HOH HOH A . F 5 HOH 165 264 264 HOH HOH A . F 5 HOH 166 265 265 HOH HOH A . F 5 HOH 167 266 266 HOH HOH A . F 5 HOH 168 267 267 HOH HOH A . F 5 HOH 169 268 268 HOH HOH A . F 5 HOH 170 269 269 HOH HOH A . F 5 HOH 171 270 270 HOH HOH A . F 5 HOH 172 271 271 HOH HOH A . F 5 HOH 173 272 272 HOH HOH A . F 5 HOH 174 273 273 HOH HOH A . F 5 HOH 175 274 274 HOH HOH A . F 5 HOH 176 275 275 HOH HOH A . F 5 HOH 177 276 276 HOH HOH A . F 5 HOH 178 277 277 HOH HOH A . F 5 HOH 179 278 278 HOH HOH A . F 5 HOH 180 279 279 HOH HOH A . F 5 HOH 181 280 280 HOH HOH A . F 5 HOH 182 281 281 HOH HOH A . F 5 HOH 183 282 282 HOH HOH A . F 5 HOH 184 283 283 HOH HOH A . F 5 HOH 185 284 284 HOH HOH A . F 5 HOH 186 285 285 HOH HOH A . F 5 HOH 187 286 286 HOH HOH A . F 5 HOH 188 287 287 HOH HOH A . F 5 HOH 189 288 288 HOH HOH A . F 5 HOH 190 289 289 HOH HOH A . F 5 HOH 191 290 290 HOH HOH A . F 5 HOH 192 291 291 HOH HOH A . F 5 HOH 193 292 292 HOH HOH A . F 5 HOH 194 293 293 HOH HOH A . F 5 HOH 195 294 294 HOH HOH A . F 5 HOH 196 295 295 HOH HOH A . F 5 HOH 197 296 296 HOH HOH A . F 5 HOH 198 297 297 HOH HOH A . F 5 HOH 199 298 298 HOH HOH A . F 5 HOH 200 299 299 HOH HOH A . F 5 HOH 201 300 300 HOH HOH A . F 5 HOH 202 301 301 HOH HOH A . F 5 HOH 203 302 302 HOH HOH A . F 5 HOH 204 303 303 HOH HOH A . F 5 HOH 205 304 304 HOH HOH A . F 5 HOH 206 305 305 HOH HOH A . F 5 HOH 207 306 306 HOH HOH A . F 5 HOH 208 307 307 HOH HOH A . F 5 HOH 209 308 308 HOH HOH A . F 5 HOH 210 309 309 HOH HOH A . F 5 HOH 211 310 310 HOH HOH A . F 5 HOH 212 311 311 HOH HOH A . F 5 HOH 213 312 312 HOH HOH A . F 5 HOH 214 313 313 HOH HOH A . F 5 HOH 215 314 314 HOH HOH A . F 5 HOH 216 315 315 HOH HOH A . F 5 HOH 217 316 316 HOH HOH A . F 5 HOH 218 317 317 HOH HOH A . F 5 HOH 219 318 318 HOH HOH A . F 5 HOH 220 319 319 HOH HOH A . F 5 HOH 221 320 320 HOH HOH A . F 5 HOH 222 321 321 HOH HOH A . F 5 HOH 223 322 322 HOH HOH A . F 5 HOH 224 323 323 HOH HOH A . F 5 HOH 225 324 324 HOH HOH A . F 5 HOH 226 325 325 HOH HOH A . F 5 HOH 227 326 326 HOH HOH A . G 5 HOH 1 14 14 HOH HOH B . G 5 HOH 2 31 31 HOH HOH B . G 5 HOH 3 45 45 HOH HOH B . G 5 HOH 4 57 57 HOH HOH B . G 5 HOH 5 58 58 HOH HOH B . G 5 HOH 6 83 83 HOH HOH B . G 5 HOH 7 101 101 HOH HOH B . G 5 HOH 8 102 102 HOH HOH B . G 5 HOH 9 106 106 HOH HOH B . G 5 HOH 10 109 109 HOH HOH B . G 5 HOH 11 226 226 HOH HOH B . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id SO4 _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 98 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O4 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id D _pdbx_unobs_or_zero_occ_atoms.label_comp_id SO4 _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O4 # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 PHENIX 1.5_2 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # _cell.entry_id 3LNY _cell.length_a 73.965 _cell.length_b 73.965 _cell.length_c 134.056 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3LNY _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.crystals_number 1 _exptl.entry_id 3LNY _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.31 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 62.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '20% PEG 3350, 0.8 M (NH4)2SO4, 0.2 M NaSCN, 0.1 M Na citrate, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-01-01 _diffrn_detector.details ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 1 'SINGLE WAVELENGTH' 'Si(111)' 1 ? x-ray 2 'SINGLE WAVELENGTH' 'Si(111)' 1 ? x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0809 _diffrn_radiation_wavelength.wt 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'NSLS BEAMLINE X29A' 1.0809 ? NSLS X29A 2 SYNCHROTRON 'NSLS BEAMLINE X29A' 1.0809 ? NSLS X29A # _reflns.entry_id 3LNY _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 50.000 _reflns.number_obs 34689 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_netI_over_sigmaI 21.600 _reflns.pdbx_chi_squared 1.237 _reflns.pdbx_redundancy 13.300 _reflns.percent_possible_obs 99.100 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.30 1.32 ? ? ? 0.180 ? ? 1.359 10.70 ? 1711 97.70 1 1,2 1.32 1.35 ? ? ? 0.149 ? ? 1.347 10.80 ? 1683 97.90 2 1,2 1.35 1.37 ? ? ? 0.130 ? ? 1.366 10.80 ? 1695 98.00 3 1,2 1.37 1.40 ? ? ? 0.117 ? ? 1.402 10.80 ? 1686 98.30 4 1,2 1.40 1.43 ? ? ? 0.102 ? ? 1.398 10.80 ? 1710 98.30 5 1,2 1.43 1.46 ? ? ? 0.095 ? ? 1.385 10.80 ? 1696 98.50 6 1,2 1.46 1.50 ? ? ? 0.080 ? ? 1.356 10.80 ? 1719 98.70 7 1,2 1.50 1.54 ? ? ? 0.070 ? ? 1.253 10.80 ? 1719 98.70 8 1,2 1.54 1.59 ? ? ? 0.064 ? ? 1.126 10.80 ? 1707 99.10 9 1,2 1.59 1.64 ? ? ? 0.063 ? ? 1.069 10.80 ? 1736 99.10 10 1,2 1.64 1.70 ? ? ? 0.059 ? ? 1.068 10.80 ? 1711 99.20 11 1,2 1.70 1.76 ? ? ? 0.062 ? ? 1.160 10.80 ? 1753 99.40 12 1,2 1.76 1.84 ? ? ? 0.061 ? ? 1.114 10.80 ? 1728 99.60 13 1,2 1.84 1.94 ? ? ? 0.059 ? ? 0.706 10.80 ? 1741 99.70 14 1,2 1.94 2.06 ? ? ? 0.102 ? ? 0.848 15.90 ? 1762 99.70 15 1,2 2.06 2.22 ? ? ? 0.093 ? ? 1.366 21.30 ? 1737 99.90 16 1,2 2.22 2.45 ? ? ? 0.079 ? ? 1.513 20.60 ? 1755 99.80 17 1,2 2.45 2.80 ? ? ? 0.065 ? ? 1.162 21.60 ? 1773 100.00 18 1,2 2.80 3.53 ? ? ? 0.051 ? ? 1.076 19.70 ? 1795 100.00 19 1,2 3.53 50.00 ? ? ? 0.034 ? ? 1.565 14.60 ? 1872 99.90 20 1,2 # _refine.entry_id 3LNY _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 29.695 _refine.pdbx_ls_sigma_F 0.22 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.680 _refine.ls_number_reflns_obs 34191 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.164 _refine.ls_R_factor_R_work 0.163 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.189 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.770 _refine.ls_number_reflns_R_free 1974 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 33.131 _refine.solvent_model_param_bsol 77.695 _refine.solvent_model_param_ksol 0.389 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -2.917 _refine.aniso_B[2][2] -2.917 _refine.aniso_B[3][3] 5.027 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] -0.000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.150 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.110 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.900 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 374.25 _refine.B_iso_min 8.48 _refine.occupancy_max 1.00 _refine.occupancy_min 0.16 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 734 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 238 _refine_hist.number_atoms_total 984 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 29.695 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 821 0.016 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 1102 1.605 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 131 0.091 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 148 0.007 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 299 15.696 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.300 1.332 14 94.000 2195 . 0.160 0.211 . 132 . 2327 . . 'X-RAY DIFFRACTION' 1.332 1.368 14 95.000 2225 . 0.146 0.185 . 139 . 2364 . . 'X-RAY DIFFRACTION' 1.368 1.409 14 96.000 2232 . 0.146 0.199 . 136 . 2368 . . 'X-RAY DIFFRACTION' 1.409 1.454 14 97.000 2256 . 0.146 0.195 . 138 . 2394 . . 'X-RAY DIFFRACTION' 1.454 1.506 14 97.000 2292 . 0.143 0.210 . 141 . 2433 . . 'X-RAY DIFFRACTION' 1.506 1.566 14 98.000 2262 . 0.146 0.187 . 138 . 2400 . . 'X-RAY DIFFRACTION' 1.566 1.638 14 98.000 2312 . 0.147 0.192 . 142 . 2454 . . 'X-RAY DIFFRACTION' 1.638 1.724 14 98.000 2294 . 0.139 0.180 . 140 . 2434 . . 'X-RAY DIFFRACTION' 1.724 1.832 14 99.000 2308 . 0.141 0.167 . 143 . 2451 . . 'X-RAY DIFFRACTION' 1.832 1.974 14 99.000 2318 . 0.135 0.151 . 142 . 2460 . . 'X-RAY DIFFRACTION' 1.974 2.172 14 99.000 2344 . 0.141 0.177 . 143 . 2487 . . 'X-RAY DIFFRACTION' 2.172 2.486 14 99.000 2344 . 0.151 0.199 . 144 . 2488 . . 'X-RAY DIFFRACTION' 2.486 3.132 14 99.000 2367 . 0.159 0.194 . 144 . 2511 . . 'X-RAY DIFFRACTION' 3.132 29.703 14 99.000 2468 . 0.192 0.187 . 152 . 2620 . . 'X-RAY DIFFRACTION' # _struct.entry_id 3LNY _struct.title 'Second PDZ domain from human PTP1E in complex with RA-GEF2 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3LNY _struct_keywords.text ;PDZ2, Structural Genomics, Protein Structure Initiative, PSI-2, Center for Eukaryotic Structural Genomics, CESG, Cytoskeleton, Cell membrane, Guanine-nucleotide releasing factor, signaling protein-signaling protein complex ; _struct_keywords.pdbx_keywords 'signaling protein/signaling protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PTN13_HUMAN Q12923 1 ;PKPGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN TGQVVHLLLEKGQSPT ; 1361 ? 2 UNP RPGF6_HUMAN Q8TEU7 2 EQVSAV 1596 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3LNY A 1 ? 96 ? Q12923 1361 ? 1456 ? 1 96 2 2 3LNY B 1 ? 6 ? Q8TEU7 1596 ? 1601 ? 3 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 11900 ? 1 MORE -258 ? 1 'SSA (A^2)' 24080 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 36.9825000000 0.8660254038 -0.5000000000 0.0000000000 -64.0555689909 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 73.9650000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 73.9650000000 0.8660254038 0.5000000000 0.0000000000 -42.7037126606 0.0000000000 0.0000000000 -1.0000000000 44.6853333333 5 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -42.7037126606 0.0000000000 0.0000000000 -1.0000000000 44.6853333333 6 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 36.9825000000 -0.8660254038 0.5000000000 0.0000000000 21.3518563303 0.0000000000 0.0000000000 -1.0000000000 44.6853333333 # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a hexamer generated from the monomer in the asymmetric unit by the operations: -x+y,-x,z:-y,x-y,z:Y+2/3,x+1/3,-z+1/3:X-Y+2/3,-Y+1/3,-Z+1/3,-X+2/3,-X+Y+1/3, -Z+1/3 ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 30 ? GLY A 33 ? VAL A 30 GLY A 33 5 ? 4 HELX_P HELX_P2 2 GLY A 44 ? GLY A 50 ? GLY A 44 GLY A 50 1 ? 7 HELX_P HELX_P3 3 THR A 70 ? ASN A 80 ? THR A 70 ASN A 80 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 6 ? ALA A 12 ? ILE A 6 ALA A 12 A 2 VAL A 84 ? GLU A 90 ? VAL A 84 GLU A 90 A 3 ARG A 57 ? VAL A 61 ? ARG A 57 VAL A 61 A 4 VAL A 64 ? SER A 65 ? VAL A 64 SER A 65 B 1 ILE A 35 ? VAL A 40 ? ILE A 35 VAL A 40 B 2 ILE A 20 ? GLY A 24 ? ILE A 20 GLY A 24 B 3 VAL B 3 ? VAL B 6 ? VAL B 5 VAL B 8 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 7 ? N PHE A 7 O LEU A 89 ? O LEU A 89 A 2 3 O LEU A 88 ? O LEU A 88 N LEU A 59 ? N LEU A 59 A 3 4 N VAL A 61 ? N VAL A 61 O VAL A 64 ? O VAL A 64 B 1 2 O LYS A 38 ? O LYS A 38 N SER A 21 ? N SER A 21 B 2 3 N VAL A 22 ? N VAL A 22 O SER B 4 ? O SER B 6 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SCN 97 ? 5 'BINDING SITE FOR RESIDUE SCN A 97' AC2 Software A SO4 98 ? 6 'BINDING SITE FOR RESIDUE SO4 A 98' AC3 Software A SO4 99 ? 9 'BINDING SITE FOR RESIDUE SO4 A 99' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ASN A 62 ? ASN A 62 . ? 1_555 ? 2 AC1 5 GLY A 63 ? GLY A 63 . ? 1_555 ? 3 AC1 5 HIS A 86 ? HIS A 86 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH A 251 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH A 307 . ? 11_445 ? 6 AC2 6 GLU A 76 ? GLU A 76 . ? 1_555 ? 7 AC2 6 THR A 77 ? THR A 77 . ? 1_555 ? 8 AC2 6 ASN A 80 ? ASN A 80 . ? 1_555 ? 9 AC2 6 HOH F . ? HOH A 121 . ? 1_555 ? 10 AC2 6 HOH F . ? HOH A 132 . ? 1_555 ? 11 AC2 6 HOH F . ? HOH A 162 . ? 1_555 ? 12 AC3 9 ALA A 12 ? ALA A 12 . ? 2_545 ? 13 AC3 9 ALA A 12 ? ALA A 12 . ? 1_555 ? 14 AC3 9 ALA A 12 ? ALA A 12 . ? 3_655 ? 15 AC3 9 GLN A 83 ? GLN A 83 . ? 1_555 ? 16 AC3 9 GLN A 83 ? GLN A 83 . ? 2_545 ? 17 AC3 9 GLN A 83 ? GLN A 83 . ? 3_655 ? 18 AC3 9 VAL A 84 ? VAL A 84 . ? 1_555 ? 19 AC3 9 VAL A 84 ? VAL A 84 . ? 3_655 ? 20 AC3 9 VAL A 84 ? VAL A 84 . ? 2_545 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ARG _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 31 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -29.52 _pdbx_validate_torsion.psi 116.03 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Center for Eukaryotic Structural Genomics' _pdbx_SG_project.initial_of_center CESG # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A SO4 99 ? E SO4 . 2 1 A HOH 209 ? F HOH . 3 1 A HOH 255 ? F HOH . 4 1 A HOH 263 ? F HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 95 ? A PRO 95 2 1 Y 1 A THR 96 ? A THR 96 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 PHE N N N N 216 PHE CA C N S 217 PHE C C N N 218 PHE O O N N 219 PHE CB C N N 220 PHE CG C Y N 221 PHE CD1 C Y N 222 PHE CD2 C Y N 223 PHE CE1 C Y N 224 PHE CE2 C Y N 225 PHE CZ C Y N 226 PHE OXT O N N 227 PHE H H N N 228 PHE H2 H N N 229 PHE HA H N N 230 PHE HB2 H N N 231 PHE HB3 H N N 232 PHE HD1 H N N 233 PHE HD2 H N N 234 PHE HE1 H N N 235 PHE HE2 H N N 236 PHE HZ H N N 237 PHE HXT H N N 238 PRO N N N N 239 PRO CA C N S 240 PRO C C N N 241 PRO O O N N 242 PRO CB C N N 243 PRO CG C N N 244 PRO CD C N N 245 PRO OXT O N N 246 PRO H H N N 247 PRO HA H N N 248 PRO HB2 H N N 249 PRO HB3 H N N 250 PRO HG2 H N N 251 PRO HG3 H N N 252 PRO HD2 H N N 253 PRO HD3 H N N 254 PRO HXT H N N 255 SCN S S N N 256 SCN C C N N 257 SCN N N N N 258 SER N N N N 259 SER CA C N S 260 SER C C N N 261 SER O O N N 262 SER CB C N N 263 SER OG O N N 264 SER OXT O N N 265 SER H H N N 266 SER H2 H N N 267 SER HA H N N 268 SER HB2 H N N 269 SER HB3 H N N 270 SER HG H N N 271 SER HXT H N N 272 SO4 S S N N 273 SO4 O1 O N N 274 SO4 O2 O N N 275 SO4 O3 O N N 276 SO4 O4 O N N 277 THR N N N N 278 THR CA C N S 279 THR C C N N 280 THR O O N N 281 THR CB C N R 282 THR OG1 O N N 283 THR CG2 C N N 284 THR OXT O N N 285 THR H H N N 286 THR H2 H N N 287 THR HA H N N 288 THR HB H N N 289 THR HG1 H N N 290 THR HG21 H N N 291 THR HG22 H N N 292 THR HG23 H N N 293 THR HXT H N N 294 TYR N N N N 295 TYR CA C N S 296 TYR C C N N 297 TYR O O N N 298 TYR CB C N N 299 TYR CG C Y N 300 TYR CD1 C Y N 301 TYR CD2 C Y N 302 TYR CE1 C Y N 303 TYR CE2 C Y N 304 TYR CZ C Y N 305 TYR OH O N N 306 TYR OXT O N N 307 TYR H H N N 308 TYR H2 H N N 309 TYR HA H N N 310 TYR HB2 H N N 311 TYR HB3 H N N 312 TYR HD1 H N N 313 TYR HD2 H N N 314 TYR HE1 H N N 315 TYR HE2 H N N 316 TYR HH H N N 317 TYR HXT H N N 318 VAL N N N N 319 VAL CA C N S 320 VAL C C N N 321 VAL O O N N 322 VAL CB C N N 323 VAL CG1 C N N 324 VAL CG2 C N N 325 VAL OXT O N N 326 VAL H H N N 327 VAL H2 H N N 328 VAL HA H N N 329 VAL HB H N N 330 VAL HG11 H N N 331 VAL HG12 H N N 332 VAL HG13 H N N 333 VAL HG21 H N N 334 VAL HG22 H N N 335 VAL HG23 H N N 336 VAL HXT H N N 337 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 PHE N CA sing N N 205 PHE N H sing N N 206 PHE N H2 sing N N 207 PHE CA C sing N N 208 PHE CA CB sing N N 209 PHE CA HA sing N N 210 PHE C O doub N N 211 PHE C OXT sing N N 212 PHE CB CG sing N N 213 PHE CB HB2 sing N N 214 PHE CB HB3 sing N N 215 PHE CG CD1 doub Y N 216 PHE CG CD2 sing Y N 217 PHE CD1 CE1 sing Y N 218 PHE CD1 HD1 sing N N 219 PHE CD2 CE2 doub Y N 220 PHE CD2 HD2 sing N N 221 PHE CE1 CZ doub Y N 222 PHE CE1 HE1 sing N N 223 PHE CE2 CZ sing Y N 224 PHE CE2 HE2 sing N N 225 PHE CZ HZ sing N N 226 PHE OXT HXT sing N N 227 PRO N CA sing N N 228 PRO N CD sing N N 229 PRO N H sing N N 230 PRO CA C sing N N 231 PRO CA CB sing N N 232 PRO CA HA sing N N 233 PRO C O doub N N 234 PRO C OXT sing N N 235 PRO CB CG sing N N 236 PRO CB HB2 sing N N 237 PRO CB HB3 sing N N 238 PRO CG CD sing N N 239 PRO CG HG2 sing N N 240 PRO CG HG3 sing N N 241 PRO CD HD2 sing N N 242 PRO CD HD3 sing N N 243 PRO OXT HXT sing N N 244 SCN S C sing N N 245 SCN C N trip N N 246 SER N CA sing N N 247 SER N H sing N N 248 SER N H2 sing N N 249 SER CA C sing N N 250 SER CA CB sing N N 251 SER CA HA sing N N 252 SER C O doub N N 253 SER C OXT sing N N 254 SER CB OG sing N N 255 SER CB HB2 sing N N 256 SER CB HB3 sing N N 257 SER OG HG sing N N 258 SER OXT HXT sing N N 259 SO4 S O1 doub N N 260 SO4 S O2 doub N N 261 SO4 S O3 sing N N 262 SO4 S O4 sing N N 263 THR N CA sing N N 264 THR N H sing N N 265 THR N H2 sing N N 266 THR CA C sing N N 267 THR CA CB sing N N 268 THR CA HA sing N N 269 THR C O doub N N 270 THR C OXT sing N N 271 THR CB OG1 sing N N 272 THR CB CG2 sing N N 273 THR CB HB sing N N 274 THR OG1 HG1 sing N N 275 THR CG2 HG21 sing N N 276 THR CG2 HG22 sing N N 277 THR CG2 HG23 sing N N 278 THR OXT HXT sing N N 279 TYR N CA sing N N 280 TYR N H sing N N 281 TYR N H2 sing N N 282 TYR CA C sing N N 283 TYR CA CB sing N N 284 TYR CA HA sing N N 285 TYR C O doub N N 286 TYR C OXT sing N N 287 TYR CB CG sing N N 288 TYR CB HB2 sing N N 289 TYR CB HB3 sing N N 290 TYR CG CD1 doub Y N 291 TYR CG CD2 sing Y N 292 TYR CD1 CE1 sing Y N 293 TYR CD1 HD1 sing N N 294 TYR CD2 CE2 doub Y N 295 TYR CD2 HD2 sing N N 296 TYR CE1 CZ doub Y N 297 TYR CE1 HE1 sing N N 298 TYR CE2 CZ sing Y N 299 TYR CE2 HE2 sing N N 300 TYR CZ OH sing N N 301 TYR OH HH sing N N 302 TYR OXT HXT sing N N 303 VAL N CA sing N N 304 VAL N H sing N N 305 VAL N H2 sing N N 306 VAL CA C sing N N 307 VAL CA CB sing N N 308 VAL CA HA sing N N 309 VAL C O doub N N 310 VAL C OXT sing N N 311 VAL CB CG1 sing N N 312 VAL CB CG2 sing N N 313 VAL CB HB sing N N 314 VAL CG1 HG11 sing N N 315 VAL CG1 HG12 sing N N 316 VAL CG1 HG13 sing N N 317 VAL CG2 HG21 sing N N 318 VAL CG2 HG22 sing N N 319 VAL CG2 HG23 sing N N 320 VAL OXT HXT sing N N 321 # _atom_sites.entry_id 3LNY _atom_sites.fract_transf_matrix[1][1] 0.013520 _atom_sites.fract_transf_matrix[1][2] 0.007806 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015611 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007460 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_