HEADER LIGASE 04-FEB-10 3LP8 TITLE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINE-GLYCINE LIGASE FROM EHRLICHIA TITLE 2 CHAFFEENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORIBOSYLAMINE-GLYCINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.4.13; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EHRLICHIA CHAFFEENSIS; SOURCE 3 ORGANISM_TAXID: 205920; SOURCE 4 STRAIN: ARKANSAS; SOURCE 5 GENE: PURD, ECH_1006; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, ALS KEYWDS 2 COLLABORATIVE CRYSTALLOGRAPHY, EHRLICHIA CHAFFEENSIS, KEYWDS 3 PHOSPHORIBOSYLAMINE-GLYCINE LIGASE, LIGASE, STRUCTURAL GENOMICS, KEYWDS 4 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 06-SEP-23 3LP8 1 REMARK SEQADV REVDAT 1 23-FEB-10 3LP8 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,B.SANKARAN,D.DAVIES,B.STAKER JRNL TITL CRYSTAL STRUCTURE OF PHOSPHORIBOSYLAMINE-GLYCINE LIGASE FROM JRNL TITL 2 EHRLICHIA CHAFFEENSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 21807 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1128 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1270 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2070 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.262 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.193 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3254 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2144 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4416 ; 1.351 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5274 ; 0.866 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 6.128 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.812 ;24.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 547 ;13.613 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.282 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 507 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3658 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2088 ; 0.618 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 869 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3346 ; 1.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1166 ; 2.157 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1067 ; 3.504 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9760 0.2190 12.2140 REMARK 3 T TENSOR REMARK 3 T11: 0.0049 T22: 0.0644 REMARK 3 T33: 0.1239 T12: 0.0077 REMARK 3 T13: 0.0037 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 1.1945 L22: 0.7791 REMARK 3 L33: 0.9396 L12: -0.1674 REMARK 3 L13: -0.3317 L23: 0.1352 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: -0.0806 S13: 0.0406 REMARK 3 S21: -0.0206 S22: 0.0013 S23: 0.0047 REMARK 3 S31: 0.0111 S32: 0.0782 S33: -0.0034 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3LP8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB DEPOSITION 2YS7 MODIFIED WITH CCP4 PROGRAM REMARK 200 CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HR INDEX SCREEN F2: 100MM TRIS PH 8.5, REMARK 280 20% PEG 2000 MME, 200MM TRIMETHYLAMINE-N-OXIDE; EHCHA.00685.A AT REMARK 280 22.5MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH REMARK 280 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.92500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.64500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.08000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.64500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.92500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.08000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ALA A 420 REMARK 465 LEU A 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 60 CG CD CE NZ REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 LYS A 174 CG CD CE NZ REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ASN A 318 CG OD1 ND2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 GLU A 341 CG CD OE1 OE2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX A 426 UNK UNX A 427 1.40 REMARK 500 UNK UNX A 425 UNK UNX A 426 1.42 REMARK 500 UNK UNX A 423 UNK UNX A 424 1.54 REMARK 500 UNK UNX A 424 UNK UNX A 425 1.61 REMARK 500 UNK UNX A 425 UNK UNX A 427 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 303 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 24.73 -158.77 REMARK 500 ASN A 26 -85.78 -101.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 422 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EHCHA.00865.A RELATED DB: TARGETDB DBREF 3LP8 A 1 421 UNP Q2GFJ0 Q2GFJ0_EHRCR 1 421 SEQADV 3LP8 MET A -20 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 ALA A -19 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -18 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -17 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -16 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -15 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -14 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 HIS A -13 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 MET A -12 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLY A -11 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 THR A -10 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 LEU A -9 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLU A -8 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 ALA A -7 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLN A -6 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 THR A -5 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLN A -4 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLY A -3 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 PRO A -2 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 GLY A -1 UNP Q2GFJ0 EXPRESSION TAG SEQADV 3LP8 SER A 0 UNP Q2GFJ0 EXPRESSION TAG SEQRES 1 A 442 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 442 ALA GLN THR GLN GLY PRO GLY SER MET ASN VAL LEU VAL SEQRES 3 A 442 ILE GLY SER GLY GLY ARG GLU HIS SER MET LEU HIS HIS SEQRES 4 A 442 ILE ARG LYS SER THR LEU LEU ASN LYS LEU PHE ILE ALA SEQRES 5 A 442 PRO GLY ARG GLU GLY MET SER GLY LEU ALA ASP ILE ILE SEQRES 6 A 442 ASP ILE ASP ILE ASN SER THR ILE GLU VAL ILE GLN VAL SEQRES 7 A 442 CYS LYS LYS GLU LYS ILE GLU LEU VAL VAL ILE GLY PRO SEQRES 8 A 442 GLU THR PRO LEU MET ASN GLY LEU SER ASP ALA LEU THR SEQRES 9 A 442 GLU GLU GLY ILE LEU VAL PHE GLY PRO SER LYS ALA ALA SEQRES 10 A 442 ALA ARG LEU GLU SER SER LYS GLY PHE THR LYS GLU LEU SEQRES 11 A 442 CYS MET ARG TYR GLY ILE PRO THR ALA LYS TYR GLY TYR SEQRES 12 A 442 PHE VAL ASP THR ASN SER ALA TYR LYS PHE ILE ASP LYS SEQRES 13 A 442 HIS LYS LEU PRO LEU VAL VAL LYS ALA ASP GLY LEU ALA SEQRES 14 A 442 GLN GLY LYS GLY THR VAL ILE CYS HIS THR HIS GLU GLU SEQRES 15 A 442 ALA TYR ASN ALA VAL ASP ALA MET LEU VAL HIS HIS LYS SEQRES 16 A 442 PHE GLY GLU ALA GLY CYS ALA ILE ILE ILE GLU GLU PHE SEQRES 17 A 442 LEU GLU GLY LYS GLU ILE SER PHE PHE THR LEU VAL ASP SEQRES 18 A 442 GLY SER ASN PRO VAL ILE LEU GLY VAL ALA GLN ASP TYR SEQRES 19 A 442 LYS THR ILE GLY ASP ASN ASN LYS GLY PRO ASN THR GLY SEQRES 20 A 442 GLY MET GLY SER TYR SER LYS PRO ASN ILE ILE THR GLN SEQRES 21 A 442 GLU MET GLU HIS ILE ILE ILE GLN LYS ILE ILE TYR PRO SEQRES 22 A 442 THR ILE LYS ALA MET PHE ASN MET ASN ILE GLN PHE ARG SEQRES 23 A 442 GLY LEU LEU PHE ALA GLY ILE ILE ILE LYS LYS ASN GLU SEQRES 24 A 442 PRO LYS LEU LEU GLU TYR ASN VAL ARG PHE GLY ASP PRO SEQRES 25 A 442 GLU THR GLN SER ILE LEU PRO ARG LEU ASN SER ASP PHE SEQRES 26 A 442 LEU LYS LEU LEU SER LEU THR ALA LYS GLY LYS LEU GLY SEQRES 27 A 442 ASN GLU SER VAL GLU LEU SER LYS LYS ALA ALA LEU CYS SEQRES 28 A 442 VAL VAL VAL ALA SER ARG GLY TYR PRO GLY GLU TYR LYS SEQRES 29 A 442 LYS ASN SER ILE ILE ASN GLY ILE GLU ASN ILE GLU LYS SEQRES 30 A 442 LEU PRO ASN VAL GLN LEU LEU HIS ALA GLY THR ARG ARG SEQRES 31 A 442 GLU GLY ASN ASN TRP VAL SER ASP SER GLY ARG VAL ILE SEQRES 32 A 442 ASN VAL VAL ALA GLN GLY GLU ASN LEU ALA SER ALA LYS SEQRES 33 A 442 HIS GLN ALA TYR ALA ALA LEU ASP LEU LEU ASP TRP PRO SEQRES 34 A 442 ASP GLY ILE TYR ARG TYR ASP ILE GLY SER CYS ALA LEU HET PO4 A 422 5 HET UNX A 423 1 HET UNX A 424 1 HET UNX A 425 1 HET UNX A 426 1 HET UNX A 427 1 HETNAM PO4 PHOSPHATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 PO4 O4 P 3- FORMUL 3 UNX 5(X) FORMUL 8 HOH *222(H2 O) HELIX 1 1 GLY A 9 ARG A 20 1 12 HELIX 2 2 ARG A 34 SER A 38 5 5 HELIX 3 3 SER A 50 GLU A 61 1 12 HELIX 4 4 PRO A 70 ASN A 76 1 7 HELIX 5 5 GLY A 77 GLU A 85 1 9 HELIX 6 6 SER A 93 SER A 102 1 10 HELIX 7 7 SER A 102 GLY A 114 1 13 HELIX 8 8 ASP A 125 HIS A 136 1 12 HELIX 9 9 THR A 158 VAL A 171 1 14 HELIX 10 10 PHE A 175 CYS A 180 5 6 HELIX 11 11 ASP A 218 ASN A 220 5 3 HELIX 12 12 THR A 238 ILE A 249 1 12 HELIX 13 13 ILE A 249 MET A 260 1 12 HELIX 14 14 PRO A 291 LEU A 297 1 7 HELIX 15 15 PRO A 298 LEU A 300 5 3 HELIX 16 16 ASP A 303 GLY A 314 1 12 HELIX 17 17 GLY A 350 LYS A 356 1 7 HELIX 18 18 ASN A 390 ASP A 403 1 14 SHEET 1 A 5 ASP A 42 ILE A 43 0 SHEET 2 A 5 LEU A 25 PRO A 32 1 N ILE A 30 O ASP A 42 SHEET 3 A 5 MET A 1 GLY A 7 1 N MET A 1 O ASN A 26 SHEET 4 A 5 LEU A 65 ILE A 68 1 O VAL A 67 N ILE A 6 SHEET 5 A 5 LEU A 88 PHE A 90 1 O PHE A 90 N VAL A 66 SHEET 1 B 4 TYR A 120 PHE A 123 0 SHEET 2 B 4 ILE A 182 GLU A 186 -1 O ILE A 182 N PHE A 123 SHEET 3 B 4 LEU A 140 ALA A 144 -1 N VAL A 141 O GLU A 185 SHEET 4 B 4 THR A 153 CYS A 156 -1 O CYS A 156 N LEU A 140 SHEET 1 C 8 GLU A 278 ASN A 285 0 SHEET 2 C 8 ARG A 265 LYS A 275 -1 N GLY A 271 O LEU A 282 SHEET 3 C 8 LYS A 191 ASP A 200 -1 N PHE A 195 O ALA A 270 SHEET 4 C 8 PRO A 204 ASP A 212 -1 O VAL A 205 N LEU A 198 SHEET 5 C 8 GLY A 229 SER A 232 -1 O TYR A 231 N GLN A 211 SHEET 6 C 8 ALA A 327 SER A 335 -1 O ALA A 328 N SER A 232 SHEET 7 C 8 ARG A 380 GLY A 388 -1 O ILE A 382 N VAL A 333 SHEET 8 C 8 VAL A 360 HIS A 364 -1 N GLN A 361 O VAL A 385 SHEET 1 D 7 GLU A 278 ASN A 285 0 SHEET 2 D 7 ARG A 265 LYS A 275 -1 N GLY A 271 O LEU A 282 SHEET 3 D 7 LYS A 191 ASP A 200 -1 N PHE A 195 O ALA A 270 SHEET 4 D 7 PRO A 204 ASP A 212 -1 O VAL A 205 N LEU A 198 SHEET 5 D 7 GLY A 229 SER A 232 -1 O TYR A 231 N GLN A 211 SHEET 6 D 7 ALA A 327 SER A 335 -1 O ALA A 328 N SER A 232 SHEET 7 D 7 GLY A 410 ILE A 411 -1 O ILE A 411 N ALA A 334 SHEET 1 E 2 THR A 215 GLY A 217 0 SHEET 2 E 2 LYS A 221 ASN A 224 -1 O LYS A 221 N GLY A 217 SHEET 1 F 3 ILE A 347 ILE A 348 0 SHEET 2 F 3 ASN A 373 SER A 376 -1 O TRP A 374 N ILE A 348 SHEET 3 F 3 THR A 367 GLU A 370 -1 N ARG A 368 O VAL A 375 CISPEP 1 ALA A 31 PRO A 32 0 -6.29 CISPEP 2 LEU A 138 PRO A 139 0 -3.54 CISPEP 3 ASP A 290 PRO A 291 0 16.10 CISPEP 4 TYR A 338 PRO A 339 0 5.93 SITE 1 AC1 8 LYS A 233 HIS A 243 ASN A 390 LEU A 391 SITE 2 AC1 8 HOH A 498 HOH A 505 HOH A 639 HOH A 648 CRYST1 49.850 74.160 107.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020060 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009321 0.00000