HEADER VIRAL PROTEIN 05-FEB-10 3LPH TITLE CRYSTAL STRUCTURE OF THE HIV-1 REV DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN REV; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: OLIGOMERIZATION AND RNA-BINDING DOMAINS, RESIDUES 1-70; COMPND 5 SYNONYM: REGULATOR OF EXPRESSION OF VIRAL PROTEINS, ANTI-REPRESSION COMPND 6 TRANSACTIVATOR, ART/TRS; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 3 ORGANISM_COMMON: HIV-1; SOURCE 4 ORGANISM_TAXID: 11707; SOURCE 5 STRAIN: HXB3; SOURCE 6 GENE: REV; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS HELIX-LOOP-HELIX, RNA-BINDING ARGININE RICH MOTIF, PROTEIN KEYWDS 2 OLIGOMERIZATION, AIDS, HOST CYTOPLASM, HOST NUCLEUS, HOST-VIRUS KEYWDS 3 INTERACTION, MRNA TRANSPORT, PHOSPHOPROTEIN, RNA-BINDING, TRANSPORT, KEYWDS 4 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.D.DAUGHERTY REVDAT 5 03-APR-24 3LPH 1 REMARK REVDAT 4 21-FEB-24 3LPH 1 REMARK REVDAT 3 13-OCT-21 3LPH 1 REMARK SEQADV REVDAT 2 01-NOV-17 3LPH 1 REMARK REVDAT 1 08-DEC-10 3LPH 0 JRNL AUTH M.D.DAUGHERTY,B.LIU,A.D.FRANKEL JRNL TITL STRUCTURAL BASIS FOR COOPERATIVE RNA BINDING AND EXPORT JRNL TITL 2 COMPLEX ASSEMBLY BY HIV REV. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1337 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20953181 JRNL DOI 10.1038/NSMB.1902 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 11031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.1440 - 3.9680 0.99 2870 142 0.2211 0.2464 REMARK 3 2 3.9680 - 3.1497 0.98 2668 144 0.1880 0.2434 REMARK 3 3 3.1497 - 2.7516 0.95 2577 125 0.2523 0.2784 REMARK 3 4 2.7516 - 2.5001 0.89 2376 129 0.2700 0.3028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 66.08 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.31500 REMARK 3 B22 (A**2) : -2.31500 REMARK 3 B33 (A**2) : 4.62900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1924 REMARK 3 ANGLE : 0.677 2591 REMARK 3 CHIRALITY : 0.044 267 REMARK 3 PLANARITY : 0.004 343 REMARK 3 DIHEDRAL : 16.175 757 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 9:70) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9604 40.1146 1.9113 REMARK 3 T TENSOR REMARK 3 T11: 0.1840 T22: 0.3580 REMARK 3 T33: 0.2261 T12: -0.0411 REMARK 3 T13: 0.0366 T23: -0.0923 REMARK 3 L TENSOR REMARK 3 L11: 0.0461 L22: 0.6544 REMARK 3 L33: 1.1456 L12: -0.1987 REMARK 3 L13: 0.1924 L23: -0.7956 REMARK 3 S TENSOR REMARK 3 S11: -0.0637 S12: -0.1104 S13: 0.0975 REMARK 3 S21: -0.0289 S22: 0.2456 S23: -0.2053 REMARK 3 S31: -0.2164 S32: -0.1096 S33: -0.1251 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 9:63) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2435 35.2223 8.6079 REMARK 3 T TENSOR REMARK 3 T11: 0.3513 T22: 0.4801 REMARK 3 T33: 0.3120 T12: -0.0116 REMARK 3 T13: 0.0860 T23: 0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.2552 L22: 1.8690 REMARK 3 L33: 1.1294 L12: -0.2875 REMARK 3 L13: 0.7592 L23: 0.4227 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: -0.1238 S13: 0.3647 REMARK 3 S21: 0.2224 S22: 0.5105 S23: -0.3129 REMARK 3 S31: -0.0192 S32: -0.0378 S33: -0.2344 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 8:65) REMARK 3 ORIGIN FOR THE GROUP (A): -36.4358 28.7934 -10.0082 REMARK 3 T TENSOR REMARK 3 T11: 0.4243 T22: 0.3076 REMARK 3 T33: 0.2885 T12: -0.1842 REMARK 3 T13: 0.0759 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 1.6981 L22: 1.5242 REMARK 3 L33: 1.0002 L12: -0.5740 REMARK 3 L13: 0.5100 L23: -0.1764 REMARK 3 S TENSOR REMARK 3 S11: 0.2025 S12: 0.3801 S13: -0.0409 REMARK 3 S21: -0.1855 S22: -0.0370 S23: 0.2025 REMARK 3 S31: -0.3766 S32: -0.0673 S33: -0.0281 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 8:64) REMARK 3 ORIGIN FOR THE GROUP (A): -43.5639 17.8464 -2.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.4278 T22: 0.2551 REMARK 3 T33: 0.3331 T12: -0.1237 REMARK 3 T13: 0.0108 T23: 0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.4293 L22: 3.3141 REMARK 3 L33: 2.2646 L12: -1.6895 REMARK 3 L13: -1.2411 L23: 0.4323 REMARK 3 S TENSOR REMARK 3 S11: -0.3188 S12: -0.3367 S13: -0.0189 REMARK 3 S21: 0.4503 S22: 0.7117 S23: -0.1914 REMARK 3 S31: 0.0082 S32: -0.1341 S33: -0.1452 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3LPH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : KOHZU DOUBLE FLAT CRYSTAL REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD; MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE, RESOLVE, PHENIX VERSION 1.5-2 REMARK 200 STARTING MODEL: AN INITIAL MODEL WAS GENERATED USING MAD DATA REMARK 200 SETS. THIS LOWER RESOLUTION MODEL WAS USED FOR MOLECULAR REMARK 200 REPLACEMENT WITH THE FINAL NATIVE DATA SET. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS PH 8.0, 50 MM NACL, 1.45 REMARK 280 -1.55 M (NH4)2SO4, 3% PEG1000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.05433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.10867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.05433 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.10867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.05433 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 54.10867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.05433 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 54.10867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 BR BR C 74 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ASP A 7 REMARK 465 SER A 8 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 ARG B 4 REMARK 465 SER B 5 REMARK 465 GLY B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 LEU B 64 REMARK 465 GLY B 65 REMARK 465 ARG B 66 REMARK 465 SER B 67 REMARK 465 ALA B 68 REMARK 465 GLU B 69 REMARK 465 PRO B 70 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ARG C 4 REMARK 465 SER C 5 REMARK 465 GLY C 6 REMARK 465 ASP C 7 REMARK 465 ARG C 66 REMARK 465 SER C 67 REMARK 465 ALA C 68 REMARK 465 GLU C 69 REMARK 465 PRO C 70 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 ARG D 4 REMARK 465 SER D 5 REMARK 465 GLY D 6 REMARK 465 ASP D 7 REMARK 465 GLY D 65 REMARK 465 ARG D 66 REMARK 465 SER D 67 REMARK 465 ALA D 68 REMARK 465 GLU D 69 REMARK 465 PRO D 70 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ARG A 35 CZ NH1 NH2 REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 9 CG OD1 OD2 REMARK 470 GLU B 10 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 ARG B 35 CD NE CZ NH1 NH2 REMARK 470 GLN B 36 CD OE1 NE2 REMARK 470 ARG B 39 CD NE CZ NH1 NH2 REMARK 470 ARG B 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 SER C 8 OG REMARK 470 GLU C 10 CG CD OE1 OE2 REMARK 470 GLU C 32 CD OE1 OE2 REMARK 470 ARG C 35 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 43 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 44 CD NE CZ NH1 NH2 REMARK 470 GLU C 47 CG CD OE1 OE2 REMARK 470 GLU D 10 CG CD OE1 OE2 REMARK 470 ASN D 30 CG OD1 ND2 REMARK 470 ARG D 35 NE CZ NH1 NH2 REMARK 470 GLN D 36 CG CD OE1 NE2 REMARK 470 ARG D 39 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 47 CG CD OE1 OE2 REMARK 470 GLU D 57 CD OE1 OE2 REMARK 470 THR D 62 OG1 CG2 REMARK 470 TYR D 63 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU D 64 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 145.22 -174.90 REMARK 500 LEU A 64 -147.06 -128.10 REMARK 500 ASN B 26 63.72 -113.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 71 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 73 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 71 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 74 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A 75 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 71 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 73 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 74 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR D 72 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 73 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR C 74 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 76 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI B 75 DBREF 3LPH A 1 70 UNP P69718 REV_HV1H3 1 70 DBREF 3LPH B 1 70 UNP P69718 REV_HV1H3 1 70 DBREF 3LPH C 1 70 UNP P69718 REV_HV1H3 1 70 DBREF 3LPH D 1 70 UNP P69718 REV_HV1H3 1 70 SEQADV 3LPH GLY A -1 UNP P69718 EXPRESSION TAG SEQADV 3LPH ALA A 0 UNP P69718 EXPRESSION TAG SEQADV 3LPH SER A 12 UNP P69718 LEU 12 ENGINEERED MUTATION SEQADV 3LPH ARG A 60 UNP P69718 LEU 60 ENGINEERED MUTATION SEQADV 3LPH GLY B -1 UNP P69718 EXPRESSION TAG SEQADV 3LPH ALA B 0 UNP P69718 EXPRESSION TAG SEQADV 3LPH SER B 12 UNP P69718 LEU 12 ENGINEERED MUTATION SEQADV 3LPH ARG B 60 UNP P69718 LEU 60 ENGINEERED MUTATION SEQADV 3LPH GLY C -1 UNP P69718 EXPRESSION TAG SEQADV 3LPH ALA C 0 UNP P69718 EXPRESSION TAG SEQADV 3LPH SER C 12 UNP P69718 LEU 12 ENGINEERED MUTATION SEQADV 3LPH ARG C 60 UNP P69718 LEU 60 ENGINEERED MUTATION SEQADV 3LPH GLY D -1 UNP P69718 EXPRESSION TAG SEQADV 3LPH ALA D 0 UNP P69718 EXPRESSION TAG SEQADV 3LPH SER D 12 UNP P69718 LEU 12 ENGINEERED MUTATION SEQADV 3LPH ARG D 60 UNP P69718 LEU 60 ENGINEERED MUTATION SEQRES 1 A 72 GLY ALA MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP SEQRES 2 A 72 SER LEU LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SEQRES 3 A 72 SER ASN PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA SEQRES 4 A 72 ARG ARG ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG SEQRES 5 A 72 GLN ILE HIS SER ILE SER GLU ARG ILE ARG SER THR TYR SEQRES 6 A 72 LEU GLY ARG SER ALA GLU PRO SEQRES 1 B 72 GLY ALA MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP SEQRES 2 B 72 SER LEU LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SEQRES 3 B 72 SER ASN PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA SEQRES 4 B 72 ARG ARG ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG SEQRES 5 B 72 GLN ILE HIS SER ILE SER GLU ARG ILE ARG SER THR TYR SEQRES 6 B 72 LEU GLY ARG SER ALA GLU PRO SEQRES 1 C 72 GLY ALA MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP SEQRES 2 C 72 SER LEU LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SEQRES 3 C 72 SER ASN PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA SEQRES 4 C 72 ARG ARG ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG SEQRES 5 C 72 GLN ILE HIS SER ILE SER GLU ARG ILE ARG SER THR TYR SEQRES 6 C 72 LEU GLY ARG SER ALA GLU PRO SEQRES 1 D 72 GLY ALA MET ALA GLY ARG SER GLY ASP SER ASP GLU ASP SEQRES 2 D 72 SER LEU LYS ALA VAL ARG LEU ILE LYS PHE LEU TYR GLN SEQRES 3 D 72 SER ASN PRO PRO PRO ASN PRO GLU GLY THR ARG GLN ALA SEQRES 4 D 72 ARG ARG ASN ARG ARG ARG ARG TRP ARG GLU ARG GLN ARG SEQRES 5 D 72 GLN ILE HIS SER ILE SER GLU ARG ILE ARG SER THR TYR SEQRES 6 D 72 LEU GLY ARG SER ALA GLU PRO HET SO4 A 71 5 HET SO4 A 72 5 HET BR A 73 1 HET BR A 74 1 HET BR A 75 1 HET MLI A 76 7 HET BR B 71 1 HET BR B 72 1 HET BR B 73 1 HET BR B 74 1 HET MLI B 75 7 HET BR C 71 1 HET BR C 72 1 HET BR C 73 1 HET BR C 74 1 HET BR D 71 1 HET BR D 72 1 HETNAM SO4 SULFATE ION HETNAM BR BROMIDE ION HETNAM MLI MALONATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 BR 13(BR 1-) FORMUL 10 MLI 2(C3 H2 O4 2-) FORMUL 22 HOH *59(H2 O) HELIX 1 1 GLU A 10 SER A 25 1 16 HELIX 2 2 THR A 34 LEU A 64 1 31 HELIX 3 3 GLY A 65 ALA A 68 5 4 HELIX 4 4 ASP B 9 SER B 25 1 17 HELIX 5 5 THR B 34 THR B 62 1 29 HELIX 6 6 SER C 8 SER C 25 1 18 HELIX 7 7 THR C 34 LEU C 64 1 31 HELIX 8 8 GLU D 10 SER D 25 1 16 HELIX 9 9 THR D 34 TYR D 63 1 30 SITE 1 AC1 7 ARG A 39 ARG A 42 ARG A 46 HOH A 78 SITE 2 AC1 7 HOH A 92 ARG C 42 ARG C 46 SITE 1 AC2 4 ARG A 41 ARG A 44 ARG A 48 ARG B 58 SITE 1 AC3 2 ARG A 42 MLI A 76 SITE 1 AC4 2 GLY A 65 ARG D 60 SITE 1 AC5 1 HOH A 94 SITE 1 AC6 5 ALA A 37 ASN A 40 ARG A 43 ARG A 44 SITE 2 AC6 5 HOH A 82 SITE 1 AC7 1 THR B 34 SITE 1 AC8 2 ARG B 17 HOH B 87 SITE 1 AC9 1 ARG B 60 SITE 1 BC1 2 ARG B 60 LYS C 20 SITE 1 BC2 1 HOH B 88 SITE 1 BC3 1 HOH D 81 SITE 1 BC4 1 ARG C 46 SITE 1 BC5 8 PRO A 31 ARG A 35 ARG A 38 ARG A 42 SITE 2 BC5 8 BR A 73 TRP C 45 GLN C 49 HIS C 53 SITE 1 BC6 4 GLN B 36 ALA B 37 ASN B 40 ARG B 44 CRYST1 115.801 115.801 81.163 90.00 90.00 120.00 P 64 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008636 0.004986 0.000000 0.00000 SCALE2 0.000000 0.009971 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012321 0.00000